3WYC
| Structure of a meso-diaminopimelate dehydrogenase in complex with NADP | Descriptor: | 2-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-ETHANESULFONIC ACID, Meso-diaminopimelate D-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Sakuraba, H, Akita, H, Ohshima, T. | Deposit date: | 2014-08-25 | Release date: | 2015-05-06 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.07 Å) | Cite: | Structural insight into the thermostable NADP(+)-dependent meso-diaminopimelate dehydrogenase from Ureibacillus thermosphaericus Acta Crystallogr.,Sect.D, 71, 2015
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3UES
| Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis complexed with deoxyfuconojirimycin | Descriptor: | (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL, 1,2-ETHANEDIOL, Alpha-1,3/4-fucosidase, ... | Authors: | Sakurama, H, Fushinobu, S, Yoshida, E, Honda, Y, Hidaka, M, Ashida, H, Kitaoka, M, Katayama, T, Yamamoto, K, Kumagai, H. | Deposit date: | 2011-10-31 | Release date: | 2012-04-04 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | 1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains J.Biol.Chem., 287, 2012
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3UET
| Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis D172A/E217A mutant complexed with lacto-N-fucopentaose II | Descriptor: | 1,2-ETHANEDIOL, Alpha-1,3/4-fucosidase, SODIUM ION, ... | Authors: | Sakurama, H, Fushinobu, S, Yoshida, E, Honda, Y, Hidaka, M, Ashida, H, Kitaoka, M, Katayama, T, Yamamoto, K, Kumagai, H. | Deposit date: | 2011-10-31 | Release date: | 2012-04-04 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | 1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains J.Biol.Chem., 287, 2012
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2ZVI
| Crystal structure of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis | Descriptor: | 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Authors: | Tamura, H, Yadani, T, Kai, Y, Inoue, T, Matsumura, H. | Deposit date: | 2008-11-07 | Release date: | 2009-09-01 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structure of the apo decarbamylated form of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis Acta Crystallogr.,Sect.D, 65, 2009
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2YVK
| Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis | Descriptor: | 5-S-METHYL-1-O-PHOSPHONO-5-THIO-D-RIBULOSE, Methylthioribose-1-phosphate isomerase | Authors: | Tamura, H, Inoue, T, Kai, Y, Matsumura, H. | Deposit date: | 2007-04-13 | Release date: | 2008-01-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism Protein Sci., 17, 2008
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5WYA
| Structure of amino acid racemase, 2.65 A | Descriptor: | (2S,3S)-3-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanoic acid, DIMETHYL SULFOXIDE, Isoleucine 2-epimerase | Authors: | Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T. | Deposit date: | 2017-01-11 | Release date: | 2017-04-19 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri. Acta Crystallogr D Struct Biol, 73, 2017
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2YRF
| Crystal structure of 5-methylthioribose 1-phosphate isomerase from Bacillus subtilis complexed with sulfate ion | Descriptor: | Methylthioribose-1-phosphate isomerase, SULFATE ION | Authors: | Tamura, H, Inoue, T, Kai, Y, Matsumura, H. | Deposit date: | 2007-04-02 | Release date: | 2008-01-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism Protein Sci., 17, 2008
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1QB4
| CRYSTAL STRUCTURE OF MN(2+)-BOUND PHOSPHOENOLPYRUVATE CARBOXYLASE | Descriptor: | ASPARTIC ACID, MANGANESE (II) ION, PHOSPHOENOLPYRUVATE CARBOXYLASE | Authors: | Matsumura, H, Terada, M, Shirakata, S, Inoue, T, Yoshinaga, T, Izui, K, Kai, Y. | Deposit date: | 1999-04-30 | Release date: | 2002-05-01 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Plausible phosphoenolpyruvate binding site revealed by 2.6 A structure of Mn2+-bound phosphoenolpyruvate carboxylase from Escherichia coli FEBS Lett., 458, 1999
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3WID
| Structure of a glucose dehydrogenase T277F mutant in complex with NADP | Descriptor: | Glucose 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PENTAETHYLENE GLYCOL, ... | Authors: | Sakuraba, H, Kanoh, Y, Yoneda, K, Ohshima, T. | Deposit date: | 2013-09-10 | Release date: | 2014-05-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium. Acta Crystallogr.,Sect.D, 70, 2014
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3WIC
| Structure of a substrate/cofactor-unbound glucose dehydrogenase | Descriptor: | Glucose 1-dehydrogenase, PENTAETHYLENE GLYCOL, S-1,2-PROPANEDIOL, ... | Authors: | Sakuraba, H, Kanoh, Y, Yoneda, K, Ohshima, T. | Deposit date: | 2013-09-10 | Release date: | 2014-05-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium. Acta Crystallogr.,Sect.D, 70, 2014
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3WYB
| Structure of a meso-diaminopimelate dehydrogenase | Descriptor: | Meso-diaminopimelate D-dehydrogenase | Authors: | Sakuraba, H, Akita, H, Ohshima, T. | Deposit date: | 2014-08-25 | Release date: | 2015-05-06 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural insight into the thermostable NADP(+)-dependent meso-diaminopimelate dehydrogenase from Ureibacillus thermosphaericus Acta Crystallogr.,Sect.D, 71, 2015
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5WYF
| Structure of amino acid racemase, 2.12 A | Descriptor: | CADMIUM ION, Isoleucine 2-epimerase, N-[O-PHOSPHONO-PYRIDOXYL]-ISOLEUCINE | Authors: | Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T. | Deposit date: | 2017-01-12 | Release date: | 2017-04-19 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.12 Å) | Cite: | Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri. Acta Crystallogr D Struct Biol, 73, 2017
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3WIE
| Structure of a glucose dehydrogenase T277F mutant in complex with D-glucose and NAADP | Descriptor: | Glucose 1-dehydrogenase, ZINC ION, [[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(3-carboxypyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate, ... | Authors: | Sakuraba, H, Kanoh, Y, Yoneda, K, Ohshima, T. | Deposit date: | 2013-09-10 | Release date: | 2014-05-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.33 Å) | Cite: | Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium. Acta Crystallogr.,Sect.D, 70, 2014
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3VNR
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1MHO
| THE 2.0 A STRUCTURE OF HOLO S100B FROM BOVINE BRAIN | Descriptor: | CALCIUM ION, S-100 PROTEIN | Authors: | Matsumura, H, Shiba, T, Inoue, T, Harada, S, Yasushi, K.A.I. | Deposit date: | 1997-09-11 | Release date: | 1998-11-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | A novel mode of target recognition suggested by the 2.0 A structure of holo S100B from bovine brain. Structure, 6, 1998
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3VNS
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3VNQ
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2DSN
| Crystal structure of T1 lipase | Descriptor: | CALCIUM ION, CHLORIDE ION, SODIUM ION, ... | Authors: | Matsumura, H, Kai, Y. | Deposit date: | 2006-07-03 | Release date: | 2007-07-17 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase Proteins, 70, 2007
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3WB1
| HcgB from Methanocaldococcus jannaschii | Descriptor: | SULFATE ION, Uncharacterized protein MJ0488 | Authors: | Tamura, H, Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2013-05-11 | Release date: | 2014-02-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis. Angew.Chem.Int.Ed.Engl., 52, 2013
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3WRY
| Crystal structure of helicase complex 2 | Descriptor: | CHLORIDE ION, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... | Authors: | Matsumura, H, Katoh, E. | Deposit date: | 2014-02-27 | Release date: | 2014-08-13 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1 Proc.Natl.Acad.Sci.USA, 111, 2014
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3WRX
| Crystal structure of helicase complex 1 | Descriptor: | CESIUM ION, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... | Authors: | Matsumura, H, Katoh, E. | Deposit date: | 2014-02-27 | Release date: | 2014-08-13 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1 Proc.Natl.Acad.Sci.USA, 111, 2014
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3AXB
| Structure of a dye-linked L-proline dehydrogenase from the aerobic hyperthermophilic archaeon, Aeropyrum pernix | Descriptor: | 1,2-ETHANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, PROLINE, ... | Authors: | Sakuraba, H, Ohshima, T, Satomura, T, Yoneda, K, Hara, Y. | Deposit date: | 2011-04-01 | Release date: | 2012-04-04 | Last modified: | 2017-10-11 | Method: | X-RAY DIFFRACTION (1.92 Å) | Cite: | Crystal Structure of Novel Dye-linked L-Proline Dehydrogenase from Hyperthermophilic Archaeon Aeropyrum pernix J.Biol.Chem., 287, 2012
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2ZC0
| Crystal structure of an archaeal alanine:glyoxylate aminotransferase | Descriptor: | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Alanine glyoxylate transaminase, IMIDAZOLE, ... | Authors: | Sakuraba, H, Yoneda, K, Tsuge, H, Ohshima, T. | Deposit date: | 2007-10-31 | Release date: | 2008-06-17 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structure of an archaeal alanine:glyoxylate aminotransferase Acta Crystallogr.,Sect.D, 64, 2008
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3AXM
| Structure of rice Rubisco in complex with 6PG | Descriptor: | 6-PHOSPHOGLUCONIC ACID, MAGNESIUM ION, Ribulose bisphosphate carboxylase large chain, ... | Authors: | Matsumura, H, Mizohata, E, Ishida, H, Kogami, A, Ueno, T, Makino, A, Inoue, T, Yokota, A, Mae, T, Kai, Y. | Deposit date: | 2011-04-11 | Release date: | 2012-04-11 | Last modified: | 2013-06-05 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate J.Mol.Biol., 422, 2012
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3AXK
| Structure of rice Rubisco in complex with NADP(H) | Descriptor: | GLYCEROL, MAGNESIUM ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | Authors: | Matsumura, H, Mizohata, E, Ishida, H, Kogami, A, Ueno, T, Makino, A, Inoue, T, Yokota, A, Mae, T, Kai, Y. | Deposit date: | 2011-04-11 | Release date: | 2012-04-11 | Last modified: | 2013-06-05 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate J.Mol.Biol., 422, 2012
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