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PDB: 33 results

2RTS
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Chitin binding domain1
Descriptor: chitinase
Authors:Uegaki, K.
Deposit date:2013-08-19
Release date:2014-04-23
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the chitin-binding domain 1 (ChBD1) of a hyperthermophilic chitinase from Pyrococcus furiosus.
J.Biochem., 155, 2014
2CWR
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Crystal structure of chitin biding domain of chitinase from Pyrococcus furiosus
Descriptor: chitinase
Authors:Uegaki, K, Nakamura, T, Ishikawa, K, Matsumura, H.
Deposit date:2005-06-24
Release date:2006-07-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus.
J.Mol.Biol., 381, 2008
1F2R
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NMR STRUCTURE OF THE HETERODIMERIC COMPLEX BETWEEN CAD DOMAINS OF CAD AND ICAD
Descriptor: CASPASE-ACTIVATED DNASE, INHIBITOR OF CASPASE-ACTIVATED DNASE
Authors:Otomo, T, Sakahira, H, Uegaki, K, Nagata, S, Yamazaki, T.
Deposit date:2000-05-29
Release date:2000-06-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the heterodimeric complex between CAD domains of CAD and ICAD.
Nat.Struct.Biol., 7, 2000
7Y51
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BU of 7y51 by Molmil
Acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis TTE0866 delta100 mutant
Descriptor: GLYCEROL, NICKEL (II) ION, Predicted xylanase/chitin deacetylase
Authors:Sasamoto, K, Himiyama, T, Moriyoshi, K, Ohmoto, T, Uegaki, K, Nakamura, T, Nishiya, Y.
Deposit date:2022-06-16
Release date:2022-08-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Functional analysis of the N-terminal region of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis.
Febs Open Bio, 12, 2022
1X0R
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Thioredoxin Peroxidase from Aeropyrum pernix K1
Descriptor: 1,2-ETHANEDIOL, Probable peroxiredoxin
Authors:Nakamura, T, Yamamoto, T, Inoue, T, Matsumura, H, Kobayashi, A, Hagihara, Y, Uegaki, K, Ataka, M, Kai, Y, Ishikawa, K.
Deposit date:2005-03-28
Release date:2005-12-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1
Proteins, 62, 2006
7FBW
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Acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis
Descriptor: NICKEL (II) ION, Predicted xylanase/chitin deacetylase
Authors:Sasamoto, K, Himiyama, T, Moriyoshi, K, Ohmoto, T, Uegaki, K, Nishiya, Y, Nakamura, T.
Deposit date:2021-07-13
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis.
Acta Crystallogr.,Sect.F, 77, 2021
1C9F
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BU of 1c9f by Molmil
NMR STRUCTURE OF THE CAD DOMAIN OF CASPASE-ACTIVATED DNASE
Descriptor: CASPASE-ACTIVATED DNASE
Authors:Yamazaki, T, Uegaki, K.
Deposit date:1999-08-02
Release date:2000-02-16
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the CAD domain of caspase-activated DNase and interaction with the CAD domain of its inhibitor.
J.Mol.Biol., 297, 2000
5XQY
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Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 8
Descriptor: Immunoglobulin kappa variable 1D-33
Authors:Mine, S, Nakamura, T, Uegaki, K, Hamada, D.
Deposit date:2017-06-07
Release date:2017-08-02
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI
FEBS J., 284, 2017
5XBS
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Peroxiredoxin from Aeropyrum pernix (6m mutant)
Descriptor: Peroxiredoxin
Authors:Nakamura, T, Uegaki, K.
Deposit date:2017-03-21
Release date:2018-01-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Alteration of molecular assembly of peroxiredoxins from hyperthermophilic archaea
J. Biochem., 162, 2017
5XP1
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Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 6
Descriptor: Immunoglobulin kappa variable 1D-33
Authors:Mine, S, Nakamura, T, Uegaki, K, Hamada, D.
Deposit date:2017-05-31
Release date:2017-08-02
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI
FEBS J., 284, 2017
1IRG
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BU of 1irg by Molmil
INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, 20 STRUCTURES
Descriptor: INTERFERON REGULATORY FACTOR-2
Authors:Furui, J, Uegaki, K, Yamazaki, T, Shirakawa, M, Swindells, M.B, Harada, H, Taniguchi, T, Kyogoku, Y.
Deposit date:1997-11-25
Release date:1998-03-18
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family.
Structure, 6, 1998
1IRF
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INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: INTERFERON REGULATORY FACTOR-2
Authors:Furui, J, Uegaki, K, Yamazaki, T, Shirakawa, M, Swindells, M.B, Harada, H, Taniguchi, T, Kyogoku, Y.
Deposit date:1997-11-24
Release date:1998-01-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family.
Structure, 6, 1998
5B2E
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N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii complexed with its inhibitor MPG (acetate-containing condition)
Descriptor: 2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-beta-D-glucopyranose, HEXANE-1,6-DIOL, Putative uncharacterized protein PH0499, ...
Authors:Nakamura, T, Niiyama, M, Ida, K, Uegaki, K.
Deposit date:2016-01-15
Release date:2016-08-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate recognition of N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii
J.Struct.Biol., 195, 2016
5B2F
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N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii complexed with its inhibitor MPG (phosphate-containing condition)
Descriptor: 2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-beta-D-glucopyranose, Putative uncharacterized protein PH0499, ZINC ION
Authors:Nakamura, T, Niiyama, M, Ida, K, Uegaki, K.
Deposit date:2016-01-15
Release date:2016-08-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substrate recognition of N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii
J.Struct.Biol., 195, 2016
4XM0
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N,N'-diacetylchitobiose deacetylase (SeMet derivative) from Pyrococcus furiosus in the absence of cadmium
Descriptor: Uncharacterized protein, ZINC ION
Authors:Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K.
Deposit date:2015-01-14
Release date:2015-06-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus.
Acta Crystallogr.,Sect.F, 71, 2015
4XM2
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N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus in the absence of cadmium
Descriptor: Uncharacterized protein, ZINC ION
Authors:Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K.
Deposit date:2015-01-14
Release date:2015-06-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus.
Acta Crystallogr.,Sect.F, 71, 2015
4XLZ
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N,N'-diacetylchitobiose deacetylase (SeMet derivative) from Pyrococcus furiosus in the presence of cadmium
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, CHLORIDE ION, ...
Authors:Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K.
Deposit date:2015-01-14
Release date:2015-06-10
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus.
Acta Crystallogr.,Sect.F, 71, 2015
4XM1
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BU of 4xm1 by Molmil
N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus in the presence of cadmium
Descriptor: CADMIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K.
Deposit date:2015-01-14
Release date:2015-06-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus.
Acta Crystallogr.,Sect.F, 71, 2015
5XBR
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BU of 5xbr by Molmil
Peroxiredoxin from Pyrococcus horikoshii (sulfonic acid form)
Descriptor: GLYCEROL, Peroxiredoxin
Authors:Nakamura, T, Uegaki, K.
Deposit date:2017-03-21
Release date:2018-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Alteration of molecular assembly of peroxiredoxins from hyperthermophilic archaea
J. Biochem., 162, 2017
5XBQ
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Peroxiredoxin from Pyrococcus horikoshii (6m mutant)
Descriptor: Peroxiredoxin
Authors:Nakamura, T, Uegaki, K.
Deposit date:2017-03-21
Release date:2018-01-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Alteration of molecular assembly of peroxiredoxins from hyperthermophilic archaea
J. Biochem., 162, 2017
2DSK
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Crystal structure of catalytic domain of hyperthermophilic chitinase from Pyrococcus furiosus
Descriptor: GLYCEROL, SULFATE ION, chitinase
Authors:Nakamura, T, Mine, S, Hagihara, Y, Ishikawa, K, Uegaki, K.
Deposit date:2006-06-30
Release date:2007-02-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the catalytic domain of the hyperthermophilic chitinase from Pyrococcus furiosus
ACTA CRYSTALLOGR.,SECT.F, 63, 2007
3AK1
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Superoxide dismutase from Aeropyrum pernix K1, apo-form
Descriptor: 1,2-ETHANEDIOL, Superoxide dismutase [Mn/Fe]
Authors:Nakamura, T, Uegaki, K.
Deposit date:2010-06-30
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability
Febs J., 278, 2011
3AK3
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Superoxide dismutase from Aeropyrum pernix K1, Fe-bound form
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Superoxide dismutase [Mn/Fe]
Authors:Nakamura, T, Uegaki, K.
Deposit date:2010-06-30
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability
Febs J., 278, 2011
3AK2
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Superoxide dismutase from Aeropyrum pernix K1, Mn-bound form
Descriptor: 1,2-ETHANEDIOL, MANGANESE (II) ION, Superoxide dismutase [Mn/Fe]
Authors:Nakamura, T, Uegaki, K.
Deposit date:2010-06-30
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability
Febs J., 278, 2011
3A4X
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Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase, GLYCEROL, ...
Authors:Tsuji, H, Nishimura, S, Inui, T, Ishikawa, K, Nakamura, T, Uegaki, K.
Deposit date:2009-07-22
Release date:2010-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Kinetic and crystallographic analyses of the catalytic domain of chitinase from Pyrococcus furiosus- the role of conserved residues in the active site
Febs J., 277, 2010

 

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