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PDB: 67 件
7ZMJ
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BU of 7zmj by Molmil
SFX structure of dye-type peroxidase DtpB R243A variant in the ferric state
分子名称: MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE, Putative dye-decolorizing peroxidase (DyP), ...
著者Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
登録日2022-04-19
公開日2022-12-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
6ZAV
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BU of 6zav by Molmil
NO-bound copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) at 1.19 A resolution (unrestrained, full matrix refinement by SHELX)
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
著者Rose, S.L, Antonyuk, S.V, Sasaki, D, Yamashita, K, Hirata, K, Ueno, G, Ago, H, Eady, R.R, Tosha, T, Yamamoto, M, Hasnain, S.S.
登録日2020-06-05
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures.
Sci Adv, 7, 2021
6ZAW
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BU of 6zaw by Molmil
Damage-free NO-bound copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) determined by serial femtosecond rotation crystallography
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
著者Rose, S.L, Antonyuk, S.V, Sasaki, D, Yamashita, K, Hirata, K, Ueno, G, Ago, H, Eady, R.R, Tosha, T, Yamamoto, M, Hasnain, S.S.
登録日2020-06-05
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures.
Sci Adv, 7, 2021
6ZAT
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BU of 6zat by Molmil
Nitrite-bound copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) at 1.0 A resolution (unrestrained full matrix refinement by SHELX)
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
著者Rose, S.L, Antonyuk, S.V, Sasaki, D, Yamashita, K, Hirata, K, Ueno, G, Ago, H, Eady, R.R, Tosha, T, Yamamoto, M, Hasnain, S.S.
登録日2020-06-05
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures.
Sci Adv, 7, 2021
5ZLQ
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BU of 5zlq by Molmil
Crystal Structure of C1orf123
分子名称: UPF0587 protein C1orf123, ZINC ION
著者Furukawa, Y, Lim, C.T, Tosha, T.
登録日2018-03-29
公開日2018-10-10
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Identification of a novel zinc-binding protein, C1orf123, as an interactor with a heavy metal-associated domain
PLoS ONE, 13, 2018
7W79
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BU of 7w79 by Molmil
Heme exporter HrtBA in complex with Mn-AMPPNP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, Putative ABC transport system integral membrane protein, ...
著者Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shirouzu, M, Shiro, Y.
登録日2021-12-04
公開日2022-06-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W7B
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BU of 7w7b by Molmil
Heme exporter HrtBA in complex with protoporphyrin IX containing manganese(III), high resolution data
分子名称: (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE, DI(HYDROXYETHYL)ETHER, PROTOPORPHYRIN IX CONTAINING MN, ...
著者Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shirouzu, M, Shiro, Y.
登録日2021-12-04
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W7A
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BU of 7w7a by Molmil
Heme exporter in complex with Mn-containing protoporphyrin IX, Mn-anomalous data
分子名称: (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
著者Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shirouzu, M, Shiro, Y.
登録日2021-12-04
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.204 Å)
主引用文献Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W7D
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BU of 7w7d by Molmil
Heme exporter HrtBA in complex with heme
分子名称: PROTOPORPHYRIN IX CONTAINING FE, Putative ABC transport system integral membrane protein, Putative ABC transport system, ...
著者Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shiro, Y, Shirouzu, M.
登録日2021-12-04
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W78
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BU of 7w78 by Molmil
Heme exporter HrtBA in complex with Mg-AMPPNP
分子名称: ACETATE ION, DODECANE, GLYCEROL, ...
著者Hisano, T, Nakamura, H, Rahman, M.M, Tosha, T, Shirouzu, M, Shiro, Y.
登録日2021-12-04
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.884 Å)
主引用文献Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W7C
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BU of 7w7c by Molmil
Heme exporter in the unliganded form
分子名称: Putative ABC transport system integral membrane protein, Putative ABC transport system, ATP-binding protein, ...
著者Rahman, M.M, Hisano, T, Nakamura, H, Tosha, T, Shirouzu, M, Shiro, Y.
登録日2021-12-04
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
6ZAR
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BU of 6zar by Molmil
As-isolated copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) at 1.1 A resolution (unrestrained, full matrix refinement by SHELX)
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
著者Rose, S.L, Antonyuk, S.V, Sasaki, D, Yamashita, K, Hirata, K, Ueno, G, Ago, H, Eady, R.R, Tosha, T, Yamamoto, M, Hasnain, S.S.
登録日2020-06-05
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures.
Sci Adv, 7, 2021
6ZAX
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BU of 6zax by Molmil
Nitrite-bound copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) at low dose (0.5 MGy)
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
著者Rose, S.L, Antonyuk, S.V, Sasaki, D, Yamashita, K, Hirata, K, Ueno, G, Ago, H, Eady, R.R, Tosha, T, Yamamoto, M, Hasnain, S.S.
登録日2020-06-05
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures.
Sci Adv, 7, 2021
6ZAU
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BU of 6zau by Molmil
Damage-free nitrite-bound copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) determined by serial femtosecond rotation crystallography
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, GLYCEROL, ...
著者Rose, S.L, Antonyuk, S.V, Sasaki, D, Yamashita, K, Hirata, K, Ueno, G, Ago, H, Eady, R.R, Tosha, T, Yamamoto, M, Hasnain, S.S.
登録日2020-06-05
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures.
Sci Adv, 7, 2021
6ZAS
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BU of 6zas by Molmil
Damage-free as-isolated copper nitrite reductase from Bradyrhizobium sp. ORS 375 (two-domain) determined by serial femtosecond rotation crystallography
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, SULFATE ION
著者Rose, S.L, Antonyuk, S.V, Sasaki, D, Yamashita, K, Hirata, K, Ueno, G, Ago, H, Eady, R.R, Tosha, T, Yamamoto, M, Hasnain, S.S.
登録日2020-06-05
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures.
Sci Adv, 7, 2021
7BI1
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BU of 7bi1 by Molmil
XFEL crystal structure of soybean ascorbate peroxidase compound II
分子名称: Ascorbate peroxidase, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE
著者Kwon, H, Tosha, T, Sugimoto, H, Raven, E.L, Moody, P.C.E.
登録日2021-01-12
公開日2021-04-21
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献XFEL Crystal Structures of Peroxidase Compound II.
Angew.Chem.Int.Ed.Engl., 60, 2021
7BIU
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BU of 7biu by Molmil
XFEL crystal structure of cytochrome c peroxidase compound II
分子名称: Cytochrome c peroxidase, mitochondrial, HEME C
著者Kwon, H, Tosha, T, Sugimoto, H, Raven, E.L, Moody, P.C.E.
登録日2021-01-13
公開日2021-04-21
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献XFEL Crystal Structures of Peroxidase Compound II.
Angew.Chem.Int.Ed.Engl., 60, 2021
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