4WC0
 
 | | tRNA-processing enzyme with ATP | | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase | | Authors: | Yamashita, S, Tomita, K. | | Deposit date: | 2014-09-04 | | Release date: | 2015-04-15 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
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4WC2
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4WC1
 | | Structure of tRNA-processing enzyme with CTP | | Descriptor: | CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase | | Authors: | Yamashita, S, Tomita, K. | | Deposit date: | 2014-09-04 | | Release date: | 2015-04-15 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
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4WC7
 | | Structure of tRNA-processing enzyme complex 5 | | Descriptor: | CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-MER) | | Authors: | Yamashita, S, Tomita, K. | | Deposit date: | 2014-09-04 | | Release date: | 2015-04-15 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (3.102 Å) | | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
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4X0A
 | | Structure of tRNA-processing enzyme complex 6 | | Descriptor: | Poly A polymerase, RNA (73-MER) | | Authors: | Yamashita, S, Tomita, K. | | Deposit date: | 2014-11-21 | | Release date: | 2015-04-15 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (3.505 Å) | | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
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8J6V
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292D
 | | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX | | Descriptor: | 1-(AMINOETHYL)AMINO-4-AMINOBUTANE, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, ... | | Authors: | Ohishi, H, Kunisawa, S, Van Der Marel, G, Van Boom, J.H, Rich, A, Wang, A.H.-J, Tomita, K, Hakoshima, T. | | Deposit date: | 1991-10-09 | | Release date: | 1996-12-02 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (1 Å) | | Cite: | Interaction between the left-handed Z-DNA and polyamine. The crystal structure of the d(CG)3 and N-(2-aminoethyl)-1,4-diamino-butane complex.
FEBS Lett., 284, 1991
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3H39
 | | The complex structure of CCA-adding enzyme with ATP | | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, TRNA nucleotidyl transferase-related protein | | Authors: | Toh, Y, Tomita, K. | | Deposit date: | 2009-04-16 | | Release date: | 2009-10-13 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.854 Å) | | Cite: | Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
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3H38
 | | The structure of CCA-adding enzyme apo form II | | Descriptor: | TRNA nucleotidyl transferase-related protein | | Authors: | Toh, Y, Tomita, K. | | Deposit date: | 2009-04-16 | | Release date: | 2009-10-13 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.37 Å) | | Cite: | Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
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3H37
 | | The structure of CCA-adding enzyme apo form I | | Descriptor: | TRNA nucleotidyl transferase-related protein | | Authors: | Toh, Y, Tomita, K. | | Deposit date: | 2009-04-16 | | Release date: | 2009-10-13 | | Last modified: | 2014-02-05 | | Method: | X-RAY DIFFRACTION (2.85 Å) | | Cite: | Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
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3H3A
 | | The complex structure of CCA-adding enzyme with CTP | | Descriptor: | CYTIDINE-5'-TRIPHOSPHATE, TRNA nucleotidyl transferase-related protein | | Authors: | Toh, Y, Tomita, K. | | Deposit date: | 2009-04-16 | | Release date: | 2009-10-13 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.801 Å) | | Cite: | Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
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6IW6
 | | Crystal structure of the Lin28-interacting module of human TUT4 | | Descriptor: | 1,2-ETHANEDIOL, CITRATE ANION, Terminal uridylyltransferase 4,Terminal uridylyltransferase 4, ... | | Authors: | Yamashita, S, Tomita, K. | | Deposit date: | 2018-12-04 | | Release date: | 2019-04-24 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.402 Å) | | Cite: | Crystal structure of the Lin28-interacting module of human terminal uridylyltransferase that regulates let-7 expression.
Nat Commun, 10, 2019
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3WFO
 | | tRNA processing enzyme (apo form 1) | | Descriptor: | Poly A polymerase, SULFATE ION | | Authors: | Yamashita, S, Takeshita, D, Tomita, K. | | Deposit date: | 2013-07-23 | | Release date: | 2014-01-01 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (3.4 Å) | | Cite: | Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase
Structure, 22, 2014
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3WFP
 | | tRNA processing enzyme (apo form 2) | | Descriptor: | Poly A polymerase, SULFATE ION | | Authors: | Yamashita, S, Takeshita, D, Tomita, K. | | Deposit date: | 2013-07-23 | | Release date: | 2014-01-01 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (4.005 Å) | | Cite: | Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase
Structure, 22, 2014
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3WFQ
 | | tRNA processing enzyme complex 1 | | Descriptor: | Poly A polymerase, RNA (73-MER) | | Authors: | Yamashita, S, Takeshita, D, Tomita, K. | | Deposit date: | 2013-07-23 | | Release date: | 2014-01-01 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (3.619 Å) | | Cite: | Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase
Structure, 22, 2014
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7VNX
 | | Crystal structure of TkArkI | | Descriptor: | GUANOSINE, TkArkI | | Authors: | Yamashita, S, Minowa, K, Ohira, T, Suzuki, T, Tomita, K. | | Deposit date: | 2021-10-12 | | Release date: | 2022-05-04 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.801 Å) | | Cite: | Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance.
Nature, 605, 2022
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2DPT
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2DPS
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7VMC
 | | Crystal structure of EF-Tu/CdiA/CdiI | | Descriptor: | Contact-dependent inhibitor I, Elongation factor Tu, tRNA nuclease CdiA | | Authors: | Wang, J, Yashiro, Y, Tomita, K. | | Deposit date: | 2021-10-08 | | Release date: | 2022-03-30 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (3.413 Å) | | Cite: | Mechanistic insights into tRNA cleavage by a contact-dependent growth inhibitor protein and translation factors.
Nucleic Acids Res., 50, 2022
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5HC9
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5Y0P
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5Y0S
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5Y0R
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5Y0N
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5Y0Q
 | | Crystal structure of BsTmcAL bound with AMPCPP | | Descriptor: | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, UPF0348 protein B4417_3650 | | Authors: | Yamashita, S, Tomita, K. | | Deposit date: | 2017-07-18 | | Release date: | 2018-07-18 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
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