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PDB: 98 件
4WC0
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BU of 4wc0 by Molmil
tRNA-processing enzyme with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC2
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BU of 4wc2 by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Poly A polymerase, ...
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC1
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BU of 4wc1 by Molmil
Structure of tRNA-processing enzyme with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC7
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BU of 4wc7 by Molmil
Structure of tRNA-processing enzyme complex 5
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.102 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4X0A
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BU of 4x0a by Molmil
Structure of tRNA-processing enzyme complex 6
分子名称: Poly A polymerase, RNA (73-MER)
著者Yamashita, S, Tomita, K.
登録日2014-11-21
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.505 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
8J6V
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BU of 8j6v by Molmil
Structure of yeast Arginyl-tRNA-protein transferase 1
分子名称: arginyltransferase
著者Yashiro, Y, Tomita, K.
登録日2023-04-26
公開日2023-06-07
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structure of Arginyl-tRNA-protein transferase 1
To Be Published
292D
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BU of 292d by Molmil
INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX
分子名称: 1-(AMINOETHYL)AMINO-4-AMINOBUTANE, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, ...
著者Ohishi, H, Kunisawa, S, Van Der Marel, G, Van Boom, J.H, Rich, A, Wang, A.H.-J, Tomita, K, Hakoshima, T.
登録日1991-10-09
公開日1996-12-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Interaction between the left-handed Z-DNA and polyamine. The crystal structure of the d(CG)3 and N-(2-aminoethyl)-1,4-diamino-butane complex.
FEBS Lett., 284, 1991
3H39
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BU of 3h39 by Molmil
The complex structure of CCA-adding enzyme with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.854 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
3H38
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BU of 3h38 by Molmil
The structure of CCA-adding enzyme apo form II
分子名称: TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
3H37
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BU of 3h37 by Molmil
The structure of CCA-adding enzyme apo form I
分子名称: TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2014-02-05
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
3H3A
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BU of 3h3a by Molmil
The complex structure of CCA-adding enzyme with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.801 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
6IW6
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BU of 6iw6 by Molmil
Crystal structure of the Lin28-interacting module of human TUT4
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, Terminal uridylyltransferase 4,Terminal uridylyltransferase 4, ...
著者Yamashita, S, Tomita, K.
登録日2018-12-04
公開日2019-04-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.402 Å)
主引用文献Crystal structure of the Lin28-interacting module of human terminal uridylyltransferase that regulates let-7 expression.
Nat Commun, 10, 2019
3WFO
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BU of 3wfo by Molmil
tRNA processing enzyme (apo form 1)
分子名称: Poly A polymerase, SULFATE ION
著者Yamashita, S, Takeshita, D, Tomita, K.
登録日2013-07-23
公開日2014-01-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase
Structure, 22, 2014
3WFP
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BU of 3wfp by Molmil
tRNA processing enzyme (apo form 2)
分子名称: Poly A polymerase, SULFATE ION
著者Yamashita, S, Takeshita, D, Tomita, K.
登録日2013-07-23
公開日2014-01-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (4.005 Å)
主引用文献Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase
Structure, 22, 2014
3WFQ
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BU of 3wfq by Molmil
tRNA processing enzyme complex 1
分子名称: Poly A polymerase, RNA (73-MER)
著者Yamashita, S, Takeshita, D, Tomita, K.
登録日2013-07-23
公開日2014-01-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.619 Å)
主引用文献Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase
Structure, 22, 2014
7VNX
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BU of 7vnx by Molmil
Crystal structure of TkArkI
分子名称: GUANOSINE, TkArkI
著者Yamashita, S, Minowa, K, Ohira, T, Suzuki, T, Tomita, K.
登録日2021-10-12
公開日2022-05-04
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance.
Nature, 605, 2022
2DPT
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BU of 2dpt by Molmil
Leucyl/phenylalanyl-tRNA-protein transferase complexed with puromycin
分子名称: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA--protein transferase, PUROMYCIN
著者Suto, K, Shimizu, Y, Tomita, K.
登録日2006-05-14
公開日2007-01-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog
Embo J., 25, 2006
2DPS
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BU of 2dps by Molmil
Structure of Leucyl/phenylalanyl-tRNA-protein transferase
分子名称: Leucyl/phenylalanyl-tRNA--protein transferase
著者Suto, K, Shimizu, Y, Tomita, K.
登録日2006-05-14
公開日2007-01-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog
Embo J., 25, 2006
7VMC
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BU of 7vmc by Molmil
Crystal structure of EF-Tu/CdiA/CdiI
分子名称: Contact-dependent inhibitor I, Elongation factor Tu, tRNA nuclease CdiA
著者Wang, J, Yashiro, Y, Tomita, K.
登録日2021-10-08
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.413 Å)
主引用文献Mechanistic insights into tRNA cleavage by a contact-dependent growth inhibitor protein and translation factors.
Nucleic Acids Res., 50, 2022
5HC9
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BU of 5hc9 by Molmil
Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA
分子名称: MAGNESIUM ION, tRNA nucleotidyl transferase-related protein, tRNAphe
著者Yamashita, S, Tomita, K.
登録日2016-01-04
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Mechanism of 3'-Matured tRNA Discrimination from 3'-Immature tRNA by Class-II CCA-Adding Enzyme
Structure, 24, 2016
5Y0P
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BU of 5y0p by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with alpha-thio ATP
分子名称: ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0S
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BU of 5y0s by Molmil
Crystal structure of apo Thermotoga maritima TmcAL(Form II)
分子名称: 1,2-ETHANEDIOL, Thermotoga maritima TmcAL
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.103 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0R
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BU of 5y0r by Molmil
Crystal structure of Thermotoga maritima TmcAL (apo, form I)
分子名称: TmTmcAL(SeMet)
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2018-12-26
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0N
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BU of 5y0n by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with ATP (SeMet derivative)
分子名称: ADENOSINE-5'-TRIPHOSPHATE, UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2018-12-26
実験手法X-RAY DIFFRACTION (2.302 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0Q
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BU of 5y0q by Molmil
Crystal structure of BsTmcAL bound with AMPCPP
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018

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