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PDB: 113 件
3W9G
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BU of 3w9g by Molmil
Crystal structure of the ankyrin repeat domain of chicken TRPV4
分子名称: Vanilloid receptor-related osmotically activated channel protein
著者Itoh, Y, Hamada-nakahara, S, Suetsugu, S.
登録日2013-04-04
公開日2014-04-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2
Nat Commun, 5, 2014
2YYE
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BU of 2yye by Molmil
Crystal structure of selenophosphate synthetase from Aquifex aeolicus complexed with AMPCPP
分子名称: COBALT (II) ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, PHOSPHATE ION, ...
著者Itoh, Y, Sekine, S, Matsumoto, E, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-29
公開日2008-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of selenophosphate synthetase essential for selenium incorporation into proteins and RNAs
J.Mol.Biol., 385, 2009
2ZR3
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BU of 2zr3 by Molmil
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii
分子名称: Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-08-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
2ZR2
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BU of 2zr2 by Molmil
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with ATP
分子名称: ADENOSINE MONOPHOSPHATE, SULFATE ION, Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-08-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
3A3A
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BU of 3a3a by Molmil
Crystal structure of human selenocystine tRNA
分子名称: selenocysteine tRNA
著者Itoh, Y, Chiba, S, Sekine, S.I, Yokoyama, S.
登録日2009-06-11
公開日2009-08-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structure of human selenocysteine tRNA.
Nucleic Acids Res., 37, 2009
3W3S
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BU of 3w3s by Molmil
Crystal structure of A. aeolicus tRNASec in complex with M. kandleri SerRS
分子名称: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, PLATINUM (II) ION, SULFATE ION, ...
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-12-27
公開日2013-02-13
最終更新日2013-08-07
実験手法X-RAY DIFFRACTION (3.095 Å)
主引用文献Tertiary structure of bacterial selenocysteine tRNA
Nucleic Acids Res., 41, 2013
3ADC
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BU of 3adc by Molmil
Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 2)
分子名称: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S.
登録日2010-01-18
公開日2010-07-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine
Mol.Cell, 39, 2010
3ADD
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BU of 3add by Molmil
Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 3)
分子名称: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S.
登録日2010-01-18
公開日2010-07-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine
Mol.Cell, 39, 2010
3ADB
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BU of 3adb by Molmil
Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 1)
分子名称: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHATE ION, ...
著者Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S.
登録日2010-01-18
公開日2010-07-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine
Mol.Cell, 39, 2010
3W1J
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BU of 3w1j by Molmil
Crystal structure of the N-terminal truncated selenocysteine synthase SelA in complex with thiosulfate
分子名称: L-seryl-tRNA(Sec) selenium transferase, POTASSIUM ION, THIOSULFATE
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-11-15
公開日2013-06-05
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (3.252 Å)
主引用文献Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
2DQ3
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BU of 2dq3 by Molmil
Crystal structure of aq_298
分子名称: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-05-18
公開日2007-06-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of aq_298
To be Published
3W1H
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BU of 3w1h by Molmil
Crystal structure of the selenocysteine synthase SelA from Aquifex aeolicus
分子名称: L-seryl-tRNA(Sec) selenium transferase
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-11-15
公開日2013-06-05
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (3.893 Å)
主引用文献Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1K
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BU of 3w1k by Molmil
Crystal structure of the selenocysteine synthase SelA and tRNASec complex
分子名称: L-seryl-tRNA(Sec) selenium transferase, selenocysteine tRNA
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-11-15
公開日2013-06-05
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (7.5 Å)
主引用文献Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
2DQ0
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BU of 2dq0 by Molmil
Crystal structure of seryl-tRNA synthetase from Pyrococcus horikoshii complexed with a seryl-adenylate analog
分子名称: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, SULFATE ION, Seryl-tRNA synthetase
著者Itoh, Y, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-05-18
公開日2007-06-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
3WCO
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BU of 3wco by Molmil
Crystal structure of the depentamerized mutant of N-terminal truncated selenocysteine synthase SelA
分子名称: L-seryl-tRNA(Sec) selenium transferase, THIOSULFATE
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2013-05-29
公開日2014-01-22
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Dimer-Dimer Interaction of the Bacterial Selenocysteine Synthase SelA Promotes Functional Active-Site Formation and Catalytic Specificity
J.Mol.Biol., 426, 2014
3WCN
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BU of 3wcn by Molmil
Crystal structure of the depentamerized mutant of selenocysteine synthase SelA
分子名称: L-seryl-tRNA(Sec) selenium transferase, THIOSULFATE
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2013-05-29
公開日2014-01-22
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Dimer-Dimer Interaction of the Bacterial Selenocysteine Synthase SelA Promotes Functional Active-Site Formation and Catalytic Specificity
J.Mol.Biol., 426, 2014
3W1I
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BU of 3w1i by Molmil
Crystal structure of the N-terminal truncated selenocysteine synthase SelA
分子名称: L-seryl-tRNA(Sec) selenium transferase, PLATINUM (II) ION, POTASSIUM ION
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2012-11-15
公開日2013-06-05
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (3.192 Å)
主引用文献Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
5IBV
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BU of 5ibv by Molmil
Crystal Structure of Human Astrovirus capsid protein
分子名称: Capsid polyprotein VP90
著者Tao, Y.J, Toh, Y.S.
登録日2016-02-22
公開日2016-08-03
最終更新日2019-12-11
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal Structure of the Human Astrovirus Capsid Protein.
J.Virol., 90, 2016
5WCO
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BU of 5wco by Molmil
Matrix Protein (M1) of Infectious Salmon Anaemia Virus
分子名称: NS2
著者Zhang, W, Zheng, W, Toh, Y, Betancourt, M.A, Tu, J, Fan, Y, Vakharia, V, Liu, J, McNew, J.A, Jin, M, Tao, Y.J.
登録日2017-07-01
公開日2017-08-16
最終更新日2019-12-11
実験手法X-RAY DIFFRACTION (2.604 Å)
主引用文献Crystal structure of an orthomyxovirus matrix protein reveals mechanisms for self-polymerization and membrane association.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2Z3K
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BU of 2z3k by Molmil
complex structure of LF-transferase and rAF
分子名称: 2-(6-AMINO-OCTAHYDRO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ...
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3M
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BU of 2z3m by Molmil
complex structure of LF-transferase and dAF
分子名称: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ...
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3L
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BU of 2z3l by Molmil
complex structure of LF-transferase and peptide A
分子名称: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, peptide (PHE)(ARG)(TYR)(LEU)(GLY)
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3P
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BU of 2z3p by Molmil
complex structure of LF-transferase and leucine
分子名称: D(-)-TARTARIC ACID, LEUCINE, Leucyl/phenylalanyl-tRNA-protein transferase
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3O
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BU of 2z3o by Molmil
complex structure of LF-transferase and phenylalanine
分子名称: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, PHENYLALANINE
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3N
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BU of 2z3n by Molmil
complex structure of LF-transferase and peptide B
分子名称: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, peptide (PHE)(ARG)(TYR)(LEU)(GLY)
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007

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