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PDB: 211 件
5Y33
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Crystal structure of alginate lyase from Flavobacterium sp. UMI-01 reveals polymannuronate specificity
分子名称: Alginate lyase
著者Qin, H.-M, Miyakawa, T, Nakamura, A, Tanokura, M.
登録日2017-07-27
公開日2018-07-04
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Structural basis for controlling the enzymatic properties of polymannuronate preferred alginate lyase FlAlyA from the PL-7 family.
Chem. Commun. (Camb.), 54, 2018
5Z7Y
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Crystal structure of Striga hermonthica HTL7 (ShHTL7)
分子名称: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, Hyposensitive to light 7, ...
著者Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M.
登録日2018-01-30
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
2D7J
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Crystal Structure Analysis of Glutamine Amidotransferase from Pyrococcus horikoshii OT3
分子名称: GMP synthase [glutamine-hydrolyzing] subunit A
著者Maruoka, S, Lee, W.C, Kamo, M, Kudo, N, Nagata, K, Tanokura, M.
登録日2005-11-21
公開日2006-11-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Crystal structure of glutamine amidotransferase from Pyrococcus horikoshii OT3
PROC.JPN.ACAD.,SER.B, 81, 2005
5Z7Z
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Crystal structure of Striga hermonthica Dwarf14 (ShD14)
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Dwarf 14, ...
著者Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M.
登録日2018-01-30
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.978 Å)
主引用文献Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
5Z7W
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Crystal structure of Striga hermonthica HTL1 (ShHTL1)
分子名称: GLYCEROL, Hyposensitive to light 1, MAGNESIUM ION, ...
著者Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M.
登録日2018-01-30
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.657 Å)
主引用文献Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
5ZB8
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Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus
分子名称: PfuEndoQ, SAMARIUM (III) ION, ZINC ION
著者Miyazono, K, Ito, T, Tanokura, M.
登録日2018-02-10
公開日2018-04-04
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus.
Nucleic Acids Res., 46, 2018
5ZHS
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Crystal structure of OsD14 in complex with covalently bound KK052
分子名称: (4-phenylpiperazin-1-yl)(1H-1,2,3-triazol-1-yl)methanone, Strigolactone esterase D14
著者Hirabayashi, K, Miyakawa, T, Tanokura, M.
登録日2018-03-13
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Triazole Ureas Covalently Bind to Strigolactone Receptor and Antagonize Strigolactone Responses.
Mol Plant, 12, 2019
5ZHT
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Crystal structure of OsD14 in complex with covalently bound KK073
分子名称: (1H-1,2,3-triazol-1-yl){4-[4-(trifluoromethyl)phenyl]piperazin-1-yl}methanone, Strigolactone esterase D14
著者Hirabayashi, K, Miyakawa, T, Tanokura, M.
登録日2018-03-13
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.532 Å)
主引用文献Triazole Ureas Covalently Bind to Strigolactone Receptor and Antagonize Strigolactone Responses.
Mol Plant, 12, 2019
5YZ7
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Crystal structure of OsD14 in complex with D-ring-opened 7'-carba-4BD
分子名称: (2Z,4S)-5-(4-bromophenyl)-4-hydroxy-2-methylpent-2-enoic acid, Strigolactone esterase D14
著者Hirabayashi, K, Jiang, K, Xu, Y, Miyakawa, T, Asami, T, Tanokura, M.
登録日2017-12-13
公開日2018-05-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.898 Å)
主引用文献Rationally Designed Strigolactone Analogs as Antagonists of the D14 Receptor.
Plant Cell Physiol., 59, 2018
5ZHR
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Crystal structure of OsD14 in complex with covalently bound KK094
分子名称: (2,3-dihydro-1H-indol-1-yl)(1H-1,2,3-triazol-1-yl)methanone, Strigolactone esterase D14
著者Hirabayashi, K, Miyakawa, T, Tanokura, M.
登録日2018-03-13
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Triazole Ureas Covalently Bind to Strigolactone Receptor and Antagonize Strigolactone Responses.
Mol Plant, 12, 2019
5Z7X
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Crystal structure of Striga hermonthica HTL4 (ShHTL4)
分子名称: 1,2-ETHANEDIOL, Hyposensitive to light 4, MAGNESIUM ION
著者Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M.
登録日2018-01-30
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.055 Å)
主引用文献Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
5ZD4
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Crystal structure of MBP-fused BIL1/BZR1 in complex with double-stranded DNA
分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*GP*TP*GP*TP*GP*AP*AP*A)-3'), Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1, ...
著者Nosaki, S, Miyakawa, T, Xu, Y, Nakamura, A, Hirabayashi, K, Tanokura, M.
登録日2018-02-22
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Structural basis for brassinosteroid response by BIL1/BZR1.
Nat Plants, 4, 2018
2Z1N
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Crystal structure of APE0912 from Aeropyrum pernix K1
分子名称: SODIUM ION, dehydrogenase
著者Ichimura, T, Yamamura, A, Mimoto, F, Ohtsuka, J, Miyazono, K, Okai, M, Kamo, M, Lee, W.-C, Nagata, K, Tanokura, M.
登録日2007-05-10
公開日2008-03-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A unique catalytic triad revealed by the crystal structure of APE0912, a short-chain dehydrogenase/reductase family protein from Aeropyrum pernix K1
Proteins, 70, 2008
2D5I
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The crystal structure of AzoR (Azo Reductase) from Escherichia coli
分子名称: Azo Reductase, FLAVIN MONONUCLEOTIDE, GLYCEROL
著者Ito, K, Tanokura, M.
登録日2005-11-02
公開日2006-05-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Three-dimensional structure of AzoR from Escherichia coli. An oxidereductase conserved in microorganisms
J.Biol.Chem., 281, 2006
3AAD
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BU of 3aad by Molmil
Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction
分子名称: Histone chaperone ASF1A, SULFATE ION, Transcription initiation factor TFIID subunit 1
著者Akai, Y, Adachi, N, Hayashi, Y, Eitoku, M, Sano, N, Natsume, R, Kudo, N, Tanokura, M, Senda, T, Horikoshi, M.
登録日2009-11-16
公開日2010-04-28
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure of the histone chaperone CIA/ASF1-double bromodomain complex linking histone modifications and site-specific histone eviction
Proc.Natl.Acad.Sci.USA, 107, 2010
3A76
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The crystal structure of LinA
分子名称: GLYCEROL, Gamma-hexachlorocyclohexane dehydrochlorinase, SPERMIDINE
著者Okai, M, Kubota, K, Fukuda, M, Nagata, Y, Nagata, K, Tanokura, M.
登録日2009-09-15
公開日2010-09-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of g-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26
J.Mol.Biol., 2010
2E0Q
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Crystal structure of K53E thioredoxin from Sulfolobus tokodaii strain7
分子名称: thioredoxin
著者Ming, H, Tanokura, M.
登録日2006-10-11
公開日2007-10-02
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Crystal structure of thioredoxin domain of ST2123 from thermophilic archaea Sulfolobus tokodaii strain7
Proteins, 69, 2007
2ZUA
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Crystal structure of nucleoside diphosphate kinase from Haloarcula quadrata
分子名称: Nucleoside diphosphate kinase
著者Ichimura, T, Yamamura, A, Ohtsuka, J, Miyazono, K, Okai, M, Nagata, K, Tanokura, M.
登録日2008-10-15
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Molecular mechanism of distinct salt-dependent enzyme activity of two halophilic nucleoside diphosphate kinases
Biophys.J., 96, 2009
2YYS
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Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
分子名称: GLYCEROL, Proline iminopeptidase-related protein
著者Okai, M, Miyauchi, Y, Ebihara, A, Lee, W.C, Nagata, K, Tanokura, M.
登録日2007-05-01
公開日2008-02-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
Proteins, 70, 2008
2ZBC
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Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7.
分子名称: 83aa long hypothetical transcriptional regulator asnC, ISOLEUCINE
著者Miyazono, K, Tsujimura, M, Kawarabayasi, Y, Tanokura, M.
登録日2007-10-19
公開日2008-03-11
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7
Proteins, 71, 2008
3AI2
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The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH
分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-sorbose reductase
著者Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M.
登録日2010-05-07
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AK4
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Crystal structure of NADH-dependent quinuclidinone reductase from agrobacterium tumefaciens
分子名称: NADH-dependent quinuclidinone reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Miyakawa, T, Kataoka, M, Takeshita, D, Nomoto, F, Nagata, K, Shimizu, S, Tanokura, M.
登録日2010-07-07
公開日2011-07-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of NADH-dependent quinuclidinone reductase from Agrobacterium tumefaciens
To be Published
3AI3
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The crystal structure of L-Sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose
分子名称: L-sorbose, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-sorbose reductase, ...
著者Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M.
登録日2010-05-07
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AI1
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The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose reveals the structure bases of its catalytic mechanism and high substrate selectivity
分子名称: NADPH-sorbose reductase
著者Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M.
登録日2010-05-06
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
1V5Y
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Binding of coumarins to NAD(P)H:FMN oxidoreductase
分子名称: 4-HYDROXY-2H-CHROMEN-2-ONE, FLAVIN MONONUCLEOTIDE, Major NAD(P)H-flavin oxidoreductase
著者Kobori, T, Koike, H, Sasaki, H, Zenno, S, Saigo, K, Tanokura, M.
登録日2003-11-26
公開日2005-03-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Binding of coumarins to NAD(P)H:FMN oxidoreductase
To be Published

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