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PDB: 171 件

3ATG
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endo-1,3-beta-glucanase from Cellulosimicrobium cellulans
分子名称: CALCIUM ION, GLUCANASE, GLYCEROL, ...
著者Tanabe, Y, Pang, Z, Oda, M, Mikami, B.
登録日2011-01-04
公開日2012-01-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structural and thermodynamic characterization of endo-1,3-beta-glucanase: Insights into the substrate recognition mechanism.
Biochim. Biophys. Acta, 1866, 2018
7BYU
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Crystal structure of Acidovorax avenae L-fucose mutarotase (apo form)
分子名称: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, L-fucose mutarotase
著者Watanabe, Y, Fukui, Y, Watanabe, S.
登録日2020-04-24
公開日2020-05-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.206 Å)
主引用文献Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
6J7C
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Crystal structure of proline racemase-like protein from Thermococcus litoralis in complex with proline
分子名称: PROLINE, Proline racemase
著者Watanabe, Y, Watanabe, S, Itoh, Y, Watanabe, Y.
登録日2019-01-17
公開日2019-02-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon.
Biochem. Biophys. Res. Commun., 511, 2019
7BYW
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Crystal structure of Acidovorax avenae L-fucose mutarotase (L-fucose-bound form)
分子名称: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, L-fucose mutarotase, alpha-L-fucopyranose
著者Watanabe, Y, Watanabe, S.
登録日2020-04-24
公開日2020-05-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.
Biochem.Biophys.Res.Commun., 528, 2020
7YPD
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BU of 7ypd by Molmil
Discovery and characterization of a new carbonyl reductase from Rhodotorula toluroides reducing fluoroketones, and X-ray analysis of the variant by rational engineering
分子名称: Carbonyl reductase, MAGNESIUM ION
著者Watanabe, Y, Asano, Y, Hibi, M.
登録日2022-08-03
公開日2024-02-07
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Discovery and characterization of a new carbonyl reductase from Rhodotorula toluroides reducing fluoroketones, and X-ray analysis of the variant by rational engineering
To Be Published
7C0D
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Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (Hydroxypyruvate-bound form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2020-09-02
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0E
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Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (2-oxobutyrate-bound form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Ono, A, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0C
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Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (apo form)
分子名称: L-2-keto-3-deoxyarabonate dehydratase
著者Watanabe, Y, Nobuchi, R, Watanabe, S.
登録日2020-05-01
公開日2020-08-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
6JNJ
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Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase (apo-form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), PHOSPHATE ION
著者Watanabe, Y, Iga, C, Watanabe, S.
登録日2019-03-16
公開日2019-05-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6JNK
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Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase (NADP-bound form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Watanabe, Y, Iga, C, Watanabe, S.
登録日2019-03-16
公開日2019-05-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
5JGE
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BU of 5jge by Molmil
Crystal structure of Atg19 coiled-coil complexed with Ape1 propeptide
分子名称: Ape1 propeptide, Autophagy-related protein 19
著者Watanabe, Y, Noda, N.N.
登録日2016-04-20
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
6L06
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BU of 6l06 by Molmil
Crystal structure of Escherichia coli phosphatidylserine decarboxylase (apo-form)
分子名称: Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
著者Watanabe, Y, Watanabe, S.
登録日2019-09-26
公開日2020-04-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
6L07
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Crystal structure of Escherichia coli phosphatidylserine decarboxylase (PE-bound form)
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
著者Watanabe, Y, Watanabe, S.
登録日2019-09-26
公開日2020-04-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
4YTV
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BU of 4ytv by Molmil
Crystal structure of Mdm35
分子名称: COBALT (II) ION, GLYCEROL, Mitochondrial distribution and morphology protein 35
著者Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
登録日2015-03-18
公開日2015-08-12
最終更新日2020-02-05
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTW
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BU of 4ytw by Molmil
Crystal structure of Ups1-Mdm35 complex
分子名称: Mitochondrial distribution and morphology protein 35, Protein UPS1, mitochondrial
著者Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
登録日2015-03-18
公開日2015-08-12
最終更新日2020-02-05
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
4YTX
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BU of 4ytx by Molmil
Crystal structure of Ups1-Mdm35 complex with PA
分子名称: 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, Mitochondrial distribution and morphology protein 35, Protein UPS1, ...
著者Watanabe, Y, Tamura, Y, Kawano, S, Endo, T.
登録日2015-03-18
公開日2015-08-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Nat Commun, 6, 2015
6K9Y
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BU of 6k9y by Molmil
Crystal structure of human VAT-1
分子名称: NITRATE ION, Synaptic vesicle membrane protein VAT-1 homolog
著者Watanabe, Y, Endo, T.
登録日2019-06-19
公開日2020-02-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for interorganelle phospholipid transport mediated by VAT-1.
J.Biol.Chem., 295, 2020
5AZF
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BU of 5azf by Molmil
Crystal structure of LGG-1 complexed with a WEEL peptide
分子名称: CADMIUM ION, Protein lgg-1, SULFATE ION, ...
著者Watanabe, Y, Noda, N.N.
登録日2015-10-05
公開日2015-12-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
5AZH
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BU of 5azh by Molmil
Crystal structure of LGG-2 fused with an EEEWEEL peptide
分子名称: EEEWEEL peptide,Protein lgg-2, MAGNESIUM ION
著者Watanabe, Y, Fujioka, Y, Noda, N.N.
登録日2015-10-05
公開日2015-12-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
5AZG
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Crystal structure of LGG-1 complexed with a UNC-51 peptide
分子名称: CADMIUM ION, Protein lgg-1, Serine/threonine-protein kinase unc-51
著者Watanabe, Y, Fujioka, Y, Noda, N.N.
登録日2015-10-05
公開日2015-12-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
2KZB
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BU of 2kzb by Molmil
Solution structure of alpha-mannosidase binding domain of Atg19
分子名称: Autophagy-related protein 19
著者Watanabe, Y, Noda, N, Kumeta, H, Suzuki, K, Ohsumi, Y, Inagaki, F.
登録日2010-06-15
公開日2010-07-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.
J.Biol.Chem., 285, 2010
2KZK
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BU of 2kzk by Molmil
Solution structure of alpha-mannosidase binding domain of Atg34
分子名称: Uncharacterized protein YOL083W
著者Watanabe, Y, Noda, N, Kumeta, H, Suzuki, K, Ohsumi, Y, Inagaki, F.
登録日2010-06-18
公開日2010-07-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.
J.Biol.Chem., 285, 2010
3WQH
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BU of 3wqh by Molmil
Crystal Structure of human DPP-IV in complex with Anagliptin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase 4, N-[2-({2-[(2S)-2-cyanopyrrolidin-1-yl]-2-oxoethyl}amino)-2-methylpropyl]-2-methylpyrazolo[1,5-a]pyrimidine-6-carboxamide
著者Watanabe, Y.S, Okada, S, Motoyama, T, Takahashi, R, Adachi, H, Oka, M.
登録日2014-01-27
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Anagliptin, a potent dipeptidyl peptidase IV inhibitor: its single-crystal structure and enzyme interactions.
J Enzyme Inhib Med Chem, 30, 2015
5AUJ
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BU of 5auj by Molmil
Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) SeMet derivative
分子名称: DNA polymerase sliding clamp
著者Watanabe, Y, Oyama, T.
登録日2015-04-21
公開日2016-04-27
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) SeMet derivative
To Be Published
3VU4
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BU of 3vu4 by Molmil
Crystal structure of Kluyvelomyces marxianus Hsv2
分子名称: KmHsv2, SULFATE ION
著者Watanabe, Y, Noda, N.N.
登録日2012-06-15
公開日2012-07-04
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure-based analyses reveal distinct binding sites for Atg2 and phosphoinositides in Atg18.
J.Biol.Chem., 287, 2012

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件を2024-09-11に公開中

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