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PDB: 62 results

4MOK
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BU of 4mok by Molmil
Pyranose 2-oxidase H167A mutant soaked with 3-fluorinated galactose (not bound)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DODECAETHYLENE GLYCOL, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tan, T.C, Spadiut, O, Gandini, R, Haltrich, D, Divne, C.
Deposit date:2013-09-12
Release date:2014-02-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for Binding of Fluorinated Glucose and Galactose to Trametes multicolor Pyranose 2-Oxidase Variants with Improved Galactose Conversion.
Plos One, 9, 2014
4MOS
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BU of 4mos by Molmil
Pyranose 2-oxidase H450G/V546C double mutant with 2-fluorinated galactose
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-deoxy-2-fluoro-alpha-D-galactopyranose, 2-deoxy-2-fluoro-beta-D-galactopyranose, ...
Authors:Tan, T.C, Spadiut, O, Gandini, R, Haltrich, D, Divne, C.
Deposit date:2013-09-12
Release date:2014-02-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for Binding of Fluorinated Glucose and Galactose to Trametes multicolor Pyranose 2-Oxidase Variants with Improved Galactose Conversion.
Plos One, 9, 2014
3PL8
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BU of 3pl8 by Molmil
Pyranose 2-oxidase H167A complex with 3-deoxy-3-fluoro-beta-D-glucose
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-deoxy-3-fluoro-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tan, T.C, Divne, C.
Deposit date:2010-11-14
Release date:2011-04-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Regioselective control of Beta-d-glucose oxidation by pyranose 2-oxidase is intimately coupled to conformational degeneracy
J.Mol.Biol., 409, 2011
4QI4
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BU of 4qi4 by Molmil
Dehydrogenase domain of Myriococcum thermophilum cellobiose dehydrogenase, MtDH
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CADMIUM ION, ...
Authors:Tan, T.C, Gandini, R, Sygmund, C, Kittl, R, Haltrich, D, Ludwig, R, Hallberg, B.M, Divne, C.
Deposit date:2014-05-30
Release date:2015-07-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation.
Nat Commun, 6, 2015
4QI6
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BU of 4qi6 by Molmil
Cellobiose dehydrogenase from Myriococcum thermophilum, MtCDH
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cellobiose dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tan, T.C, Gandini, R, Sygmund, C, Kittl, R, Haltrich, D, Ludwig, R, Hallberg, B.M, Divne, C.
Deposit date:2014-05-30
Release date:2015-07-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation.
Nat Commun, 6, 2015
4QI3
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BU of 4qi3 by Molmil
Cytochrome domain of Myriococcum thermophilum cellobiose dehydrogenase, MtCYT
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cellobiose dehydrogenase, MAGNESIUM ION, ...
Authors:Tan, T.C, Gandini, R, Sygmund, C, Kittl, R, Haltrich, D, Ludwig, R, Hallberg, B.M, Divne, C.
Deposit date:2014-05-30
Release date:2015-07-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation.
Nat Commun, 6, 2015
4QI5
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BU of 4qi5 by Molmil
Dehydrogenase domain of Myriococcum thermophilum cellobiose dehydrogenase with bound cellobionolactam, MtDH
Descriptor: (2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CADMIUM ION, ...
Authors:Tan, T.C, Gandini, R, Sygmund, C, Kittl, R, Haltrich, D, Ludwig, R, Hallberg, B.M, Divne, C.
Deposit date:2014-05-30
Release date:2015-07-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation.
Nat Commun, 6, 2015
4QI8
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BU of 4qi8 by Molmil
Lytic polysaccharide monooxygenase 9F from Neurospora crassa, NcLPMO9F
Descriptor: COPPER (II) ION, Lytic polysaccharide monooxygenase, NITRATE ION
Authors:Tan, T.C, Gandini, R, Sygmund, C, Kittl, R, Haltrich, D, Ludwig, R, Hallberg, B.M, Divne, C.
Deposit date:2014-05-30
Release date:2015-07-15
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation.
Nat Commun, 6, 2015
5MM0
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BU of 5mm0 by Molmil
Dolichyl phosphate mannose synthase in complex with GDP-mannose and Mn2+ (donor complex)
Descriptor: CHLORIDE ION, Dolichol monophosphate mannose synthase, GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, ...
Authors:Gandini, R, Reichenbach, T, Tan, T.C, Divne, C.
Deposit date:2016-12-08
Release date:2017-08-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for dolichylphosphate mannose biosynthesis.
Nat Commun, 8, 2017
5MLZ
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BU of 5mlz by Molmil
Dolichyl phosphate mannose synthase in complex with GDP and Mg2+
Descriptor: CHLORIDE ION, Dolichol monophosphate mannose synthase, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Gandini, R, Reichenbach, T, Tan, T.C, Divne, C.
Deposit date:2016-12-08
Release date:2017-08-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for dolichylphosphate mannose biosynthesis.
Nat Commun, 8, 2017
5MM1
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BU of 5mm1 by Molmil
Dolichyl phosphate mannose synthase in complex with GDP and dolichyl phosphate mannose
Descriptor: Dolichol monophosphate mannose synthase, GUANOSINE-5'-DIPHOSPHATE, dolichyl phosphate mannose
Authors:Gandini, R, Reichenbach, T, Tan, T.C, Divne, C.
Deposit date:2016-12-08
Release date:2017-08-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for dolichylphosphate mannose biosynthesis.
Nat Commun, 8, 2017
4CAU
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BU of 4cau by Molmil
THREE-DIMENSIONAL STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH 2 HMAB 14C10 FAB
Descriptor: ENVELOPE PROTEIN E, FAB 14C10
Authors:Teoh, E.P, Kukkaro, P, Teo, E.W, Lim, A.P, Tan, T.T, Yip, A, Schul, W, Aung, M, Kostyuchenko, V.A, Leo, Y.S, Chan, S.H, Smith, K.G, Chan, A.H, Zou, G, Ooi, E.E, Kemeny, D.M, Tan, G.K, Ng, J.K, Ng, M.L, Alonso, S, Fisher, D, Shi, P.Y, Hanson, B.J, Lok, S.M, Macary, P.A.
Deposit date:2013-10-09
Release date:2013-10-16
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7 Å)
Cite:The Structural Basis for Serotype-Specific Neutralization of Dengue Virus by a Human Antibody.
Sci.Trans.Med, 4, 2012
3J05
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BU of 3j05 by Molmil
Three-dimensional structure of Dengue virus serotype 1 complexed with HMAb 14c10 Fab
Descriptor: envelope protein
Authors:Teoh, E.P, Kukkaro, P, Teo, E.W, Lim, A, Tan, T.T, Shi, P.Y, Yip, A, Schul, W, Leo, Y.S, Chan, S.H, Smith, K.G.C, Ooi, E.E, Kemeny, D.M, Ng, G, Ng, M.L, Alonso, S, Fisher, D, Hanson, B, Lok, S.M, MacAry, P.A.
Deposit date:2011-04-01
Release date:2012-07-04
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7 Å)
Cite:The structural basis for serotype-specific neutralization of dengue virus by a human antibody.
Sci Transl Med, 4, 2012
6ODC
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BU of 6odc by Molmil
Crystal structure of HDAC8 in complex with compound 30
Descriptor: (2E)-3-[2-(3-cyclopentyl-5,5-dimethyl-2-oxoimidazolidin-1-yl)phenyl]-N-hydroxyprop-2-enamide, 1,2-ETHANEDIOL, Histone deacetylase 8, ...
Authors:Zheng, X, Conti, C, Caravella, J, Zablocki, M.-M, Bair, K, Barczak, N, Han, B, Lancia Jr, D, Liu, C, Martin, M, Ng, P.Y, Rudnitskaya, A, Thomason, J.J, Garcia-Dancey, R, Hardy, C, Lahdenranta, J, Leng, C, Li, P, Pardo, E, Saldahna, A, Tan, T, Toms, A.V, Yao, L, Zhang, C.
Deposit date:2019-03-26
Release date:2020-04-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-based Discovery of Novel N-(E)-N-Hydroxy-3-(2-(2-oxoimidazolidin-1-yl)phenyl)acrylamides as Potent and Selective HDAC8 inhibitors
To Be Published
6ODA
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BU of 6oda by Molmil
Crystal structure of HDAC8 in complex with compound 2
Descriptor: Histone deacetylase 8, N-{2-[3-(hydroxyamino)-3-oxopropyl]phenyl}-3-(trifluoromethyl)benzamide, POTASSIUM ION, ...
Authors:Zheng, X, Conti, C, Caravella, J, Zablocki, M.-M, Bair, K, Barczak, N, Han, B, Lancia Jr, D, Liu, C, Martin, M, Ng, P.Y, Rudnitskaya, A, Thomason, J.J, Garcia-Dancey, R, Hardy, C, Lahdenranta, J, Leng, C, Li, P, Pardo, E, Saldahna, A, Tan, T, Toms, A.V, Yao, L, Zhang, C.
Deposit date:2019-03-26
Release date:2020-04-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structure-based Discovery of Novel N-(E)-N-Hydroxy-3-(2-(2-oxoimidazolidin-1-yl)phenyl)acrylamides as Potent and Selective HDAC8 inhibitors
To Be Published
5H37
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BU of 5h37 by Molmil
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, C10 IgG heavy chain variable region, C10 IgG light chain variable region, ...
Authors:Zhang, S, Kostyuchenko, V, Ng, T.-S, Lim, X.-N, Ooi, J.S.G, Lambert, S, Tan, T.Y, Widman, D, Shi, J, Baric, R.S, Lok, S.-M.
Deposit date:2016-10-20
Release date:2016-11-30
Last modified:2022-03-23
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Neutralization mechanism of a highly potent antibody against Zika virus
Nat Commun, 7, 2016
3BG7
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BU of 3bg7 by Molmil
Pyranose 2-oxidase from Trametes multicolor, L537G mutant
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Pyranose oxidase
Authors:Norberg, P, Tan, T.C, Divne, C.
Deposit date:2007-11-26
Release date:2008-12-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Improving thermostability and catalytic activity of pyranose 2-oxidase from Trametes multicolor by rational and semi-rational design
Febs J., 276, 2009
6ODB
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BU of 6odb by Molmil
Crystal structure of HDAC8 in complex with compound 3
Descriptor: GLYCEROL, Histone deacetylase 8, N-{2-[(1E)-3-(hydroxyamino)-3-oxoprop-1-en-1-yl]phenyl}-2-phenoxybenzamide, ...
Authors:Zheng, X, Conti, C, Caravella, J, Zablocki, M.-M, Bair, K, Barczak, N, Han, B, Lancia Jr, D, Liu, C, Martin, M, Ng, P.Y, Rudnitskaya, A, Thomason, J.J, Garcia-Dancey, R, Hardy, C, Lahdenranta, J, Leng, C, Li, P, Pardo, E, Saldahna, A, Tan, T, Toms, A.V, Yao, L, Zhang, C.
Deposit date:2019-03-26
Release date:2020-04-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-based Discovery of Novel N-(E)-N-Hydroxy-3-(2-(2-oxoimidazolidin-1-yl)phenyl)acrylamides as Potent and Selective HDAC8 inhibitors
To Be Published
3JXS
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BU of 3jxs by Molmil
Crystal structure of XG34, an evolved xyloglucan binding CBM
Descriptor: ACETATE ION, CALCIUM ION, Xylanase
Authors:Divne, C, Tan, T.-C, Brumer, H, Gullfot, F.
Deposit date:2009-09-21
Release date:2009-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of XG-34, an evolved xyloglucan-specific carbohydrate-binding module.
Proteins, 78, 2009
3K4M
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BU of 3k4m by Molmil
Pyranose 2-oxidase Y456W mutant in complex with 2FG
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-deoxy-2-fluoro-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Divne, C, Tan, T.C.
Deposit date:2009-10-05
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Importance of the gating segment in the substrate-recognition loop of pyranose 2-oxidase.
Febs J., 277, 2010
3LSH
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BU of 3lsh by Molmil
Pyranose 2-oxidase T169A, monoclinic
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Pyranose 2-oxidase
Authors:Divne, C, Tan, T.C, Spadiut, O.
Deposit date:2010-02-12
Release date:2010-08-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:H-bonding and positive charge at the N5/O4 locus are critical for covalent flavin attachment in trametes pyranose 2-oxidase.
J.Mol.Biol., 402, 2010
4PTW
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BU of 4ptw by Molmil
Halothermothrix orenii beta-glucosidase A, 2-deoxy-2-fluoro-glucose complex
Descriptor: 2-deoxy-2-fluoro-alpha-D-glucopyranose, Glycoside hydrolase family 1, TETRAETHYLENE GLYCOL
Authors:Hassan, N, Nguyen, T.H, Kori, L.D, Patel, B.K.C, Haltrich, D, Divne, C, Tan, T.C.
Deposit date:2014-03-11
Release date:2014-09-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Biochemical and structural characterization of a thermostable beta-glucosidase from Halothermothrix orenii for galacto-oligosaccharide synthesis.
Appl.Microbiol.Biotechnol., 99, 2015
4PTV
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BU of 4ptv by Molmil
Halothermothrix orenii beta-glucosidase A, thiocellobiose complex
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, CESIUM ION, Glycoside hydrolase family 1, ...
Authors:Hassan, N, Nguyen, T.H, Kori, L.D, Patel, B.K.C, Haltrich, D, Divne, C, Tan, T.C.
Deposit date:2014-03-11
Release date:2014-09-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Biochemical and structural characterization of a thermostable beta-glucosidase from Halothermothrix orenii for galacto-oligosaccharide synthesis.
Appl.Microbiol.Biotechnol., 99, 2015
3K4C
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BU of 3k4c by Molmil
Pyranose 2-oxidase H167A/T169G mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, PENTAETHYLENE GLYCOL, ...
Authors:Divne, C, Tan, T.C.
Deposit date:2009-10-05
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A conserved active-site threonine is important for both sugar and flavin oxidations of pyranose 2-oxidase.
J.Biol.Chem., 285, 2010
3K4J
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BU of 3k4j by Molmil
Pyranose 2-oxidase H450Q mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Pyranose 2-oxidase
Authors:Divne, C, Tan, T.C.
Deposit date:2009-10-05
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Importance of the gating segment in the substrate-recognition loop of pyranose 2-oxidase.
Febs J., 277, 2010

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