2ZWB
 
 | | Neutron crystal structure of wild type human lysozyme in D2O | | 分子名称: | Lysozyme C | | 著者 | Chiba-Kamoshida, K, Matsui, T, Chatake, T, Ohhara, T, Ostermann, A, Tanaka, I, Yutani, K, Niimura, N. | | 登録日 | 2008-12-02 | | 公開日 | 2009-12-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | NEUTRON DIFFRACTION (1.8 Å) | | 主引用文献 | Site-specific softening of peptide bonds by localized deuterium observed by neutron crystallography of human lysozyme
To be Published
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2DF4
 | | Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Mn2+ | | 分子名称: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... | | 著者 | Nakamura, A, Yao, M, Tanaka, I. | | 登録日 | 2006-02-23 | | 公開日 | 2006-07-18 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | | 主引用文献 | Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
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2DQN
 | | Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Asn | | 分子名称: | ASPARAGINE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ... | | 著者 | Nakamura, A, Yao, M, Tanaka, I. | | 登録日 | 2006-05-29 | | 公開日 | 2006-07-18 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | | 主引用文献 | Ammonia channel couples glutaminase with transamidase reactions in GatCAB
Science, 312, 2006
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1TAB
 | | STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN | | 分子名称: | BOWMAN-BIRK TYPE PROTEINASE INHIBITOR, TRYPSIN | | 著者 | Tsunogae, Y, Tanaka, I, Yamane, T, Kikkawa, J.-I, Ashida, T, Ishikawa, C, Watanabe, K, Nakamura, S, Takahashi, K. | | 登録日 | 1990-10-15 | | 公開日 | 1992-01-15 | | 最終更新日 | 2024-06-05 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
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2DU9
 | | crystal structure of the transcriptional factor from C.glutamicum | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Predicted transcriptional regulators | | 著者 | Gao, Y, Yao, M, Tanaka, I. | | 登録日 | 2006-07-20 | | 公開日 | 2007-07-24 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.28 Å) | | 主引用文献 | The structures of transcription factor CGL2947 from Corynebacterium glutamicum in two crystal forms: A novel homodimer assembling and the implication for effector-binding mode
Protein Sci., 16, 2007
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1V7L
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1WMI
 | | Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3 | | 分子名称: | hypothetical protein PHS013, hypothetical protein PHS014 | | 著者 | Takagi, H, Kakuta, Y, Kamachi, R, Yao, M, Tanaka, I, Kimura, M. | | 登録日 | 2004-07-09 | | 公開日 | 2005-03-15 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects
Nat.Struct.Mol.Biol., 12, 2005
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1WNU
 | | Structure of Archaeal Trans-Editing Protein AlaX in complex with L-serine | | 分子名称: | SERINE, ZINC ION, alanyl-tRNA synthetase | | 著者 | Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I. | | 登録日 | 2004-08-09 | | 公開日 | 2005-07-26 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Molecular basis of alanine discrimination in editing site
Proc.Natl.Acad.Sci.Usa, 102, 2005
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1WOE
 | | X-ray structure of a Z-DNA hexamer d(CGCGCG) | | 分子名称: | SPERMINE, Z-DNA hexamer | | 著者 | Chatake, T, Tanaka, I, Umino, H, Arai, S, Niimura, N. | | 登録日 | 2004-08-15 | | 公開日 | 2005-07-26 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique.
Acta Crystallogr.,Sect.D, 61, 2005
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1WQZ
 | | Complicated water orientations in the minor groove of B-DNA decamer D(CCATTAATGG)2 observed by neutron diffraction measurements | | 分子名称: | 5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3' | | 著者 | Arai, S, Chatake, T, Ohhara, T, Kurihara, K, Tanaka, I, Suzuki, N, Fujimoto, Z, Mizuno, H, Niimura, N. | | 登録日 | 2004-10-07 | | 公開日 | 2005-06-21 | | 最終更新日 | 2023-10-25 | | 実験手法 | NEUTRON DIFFRACTION (3 Å) | | 主引用文献 | Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements
Nucleic Acids Res., 33, 2005
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1WQY
 | | X-RAY structural analysis of B-DNA decamer D(CCATTAATGG)2 crystal grown in D2O solution | | 分子名称: | 5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3' | | 著者 | Arai, S, Chatake, T, Ohhara, T, Kurihara, K, Tanaka, I, Suzuki, N, Fujimoto, Z, Mizuno, H, Niimura, N. | | 登録日 | 2004-10-07 | | 公開日 | 2005-06-21 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements
Nucleic Acids Res., 33, 2005
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1WZZ
 | | Structure of endo-beta-1,4-glucanase CMCax from Acetobacter xylinum | | 分子名称: | Probable endoglucanase, SULFATE ION | | 著者 | Yasutake, Y, Kawano, S, Tajima, K, Yao, M, Satoh, Y, Munekata, M, Tanaka, I, Structural Genomics Consortium (SGC) | | 登録日 | 2005-03-10 | | 公開日 | 2006-03-14 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Structural characterization of the Acetobacter xylinum endo-beta-1,4-glucanase CMCax required for cellulose biosynthesis.
Proteins, 64, 2006
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3IP4
 | | The high resolution structure of GatCAB | | 分子名称: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... | | 著者 | Nakamura, A, Yao, M, Tanaka, I. | | 登録日 | 2009-08-17 | | 公開日 | 2009-11-24 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition
Nucleic Acids Res., 38, 2010
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1VCX
 | | Neutron Crystal Structure of the Wild Type Rubredoxin from Pyrococcus Furiosus at 1.5A Resolution | | 分子名称: | FE (III) ION, Rubredoxin | | 著者 | Kurihara, K, Tanaka, I, Chatake, T, Adams, M.W.W, Jenney Jr, F.E, Moiseeva, N, Bau, R, Niimura, N. | | 登録日 | 2004-03-17 | | 公開日 | 2004-08-10 | | 最終更新日 | 2023-10-25 | | 実験手法 | NEUTRON DIFFRACTION (1.5 Å) | | 主引用文献 | Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules
Proc.Natl.Acad.Sci.USA, 101, 2004
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1VGJ
 | | Crystal structure of 2'-5' RNA ligase from Pyrococcus horikoshii | | 分子名称: | Hypothetical protein PH0099 | | 著者 | Yao, M, Morita, H, Okada, A, Tanaka, I. | | 登録日 | 2004-04-27 | | 公開日 | 2005-06-07 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (1.94 Å) | | 主引用文献 | The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft
ACTA CRYSTALLOGR.,SECT.F, 62, 2006
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7VEI
 | | Neutron structure of D2O-solvent lysozyme | | 分子名称: | CHLORIDE ION, Lysozyme C, NICKEL (II) ION | | 著者 | Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S. | | 登録日 | 2021-09-08 | | 公開日 | 2022-04-06 | | 最終更新日 | 2023-11-29 | | 実験手法 | NEUTRON DIFFRACTION (2 Å) | | 主引用文献 | Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography.
Acta Crystallogr D Struct Biol, 78, 2022
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7ZAS
 | | Crystal structure of cleaved Iripin-4 serpin from tick Ixodes ricinus | | 分子名称: | CHLORIDE ION, Iripin-4 serpin | | 著者 | Kascakova, B, Kuta Smatanova, I, Chmelar, J, Prudnikova, T. | | 登録日 | 2022-03-22 | | 公開日 | 2023-03-29 | | 最終更新日 | 2024-05-01 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Conformational transition of the Ixodes ricinus salivary serpin Iripin-4.
Acta Crystallogr D Struct Biol, 79, 2023
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3IZX
 | | 3.1 Angstrom cryoEM structure of cytoplasmic polyhedrosis virus | | 分子名称: | Capsid protein VP1, Structural protein VP3, Viral structural protein 5 | | 著者 | Yu, X, Ge, P, Jiang, J, Atanasov, I, Zhou, Z.H. | | 登録日 | 2011-01-15 | | 公開日 | 2011-06-22 | | 最終更新日 | 2018-08-22 | | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | | 主引用文献 | Atomic Model of CPV Reveals the Mechanism Used by This Single-Shelled Virus to Economically Carry Out Functions Conserved in Multishelled Reoviruses.
Structure, 19, 2011
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5IP1
 | | Tomato spotted wilt tospovirus nucleocapsid protein | | 分子名称: | Nucleoprotein | | 著者 | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | | 登録日 | 2016-03-09 | | 公開日 | 2017-03-22 | | 最終更新日 | 2018-03-21 | | 実験手法 | X-RAY DIFFRACTION (2.703 Å) | | 主引用文献 | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus.
J. Virol., 91, 2017
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3QWI
 | | Crystal structure of a 17beta-hydroxysteroid dehydrogenase (holo form) from fungus Cochliobolus lunatus in complex with NADPH and coumestrol | | 分子名称: | 1,2-ETHANEDIOL, 17beta-hydroxysteroid dehydrogenase, Coumestrol, ... | | 著者 | Cassetta, A, Lamba, D, Krastanova, I, Stojan, J, Lanisnik Rizner, T, Kristan, K, Brunskole, M. | | 登録日 | 2011-02-28 | | 公開日 | 2012-01-18 | | 最終更新日 | 2023-09-13 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Structural studies on the flavonoid inhibition of a fungal 17Beta-Hydroxysteroid dehydrogenase
Biochem.J., 441, 2012
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3QWH
 | | Crystal structure of the 17beta-hydroxysteroid dehydrogenase from Cochliobolus lunatus in complex with NADPH and kaempferol | | 分子名称: | 17beta-hydroxysteroid dehydrogenase, 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE, DI(HYDROXYETHYL)ETHER, ... | | 著者 | Cassetta, A, Lamba, D, Krastanova, I, Stojan, J, Rizner, T.L, Kristan, K, Brunskole, M. | | 登録日 | 2011-02-28 | | 公開日 | 2012-03-21 | | 最終更新日 | 2023-09-13 | | 実験手法 | X-RAY DIFFRACTION (2.62 Å) | | 主引用文献 | Structural basis for inhibition of 17 beta-hydroxysteroid dehydrogenases by phytoestrogens: The case of fungal 17 beta-HSDcl.
J. Steroid Biochem. Mol. Biol., 171, 2017
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6Z1T
 | | MAP3K14 (NIK) in complex with 4S/3694 | | 分子名称: | 4S/3694, Mitogen-activated protein kinase kinase kinase 14 | | 著者 | Jacoby, E, van Vlijmen, H, Querolle, O, Stansfield, I, Meerpoel, L, Versele, M, Hynd, G, Attar, R. | | 登録日 | 2020-05-14 | | 公開日 | 2020-07-08 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (2.31 Å) | | 主引用文献 | FEP+ calculations predict a stereochemical SAR switch for first-in-class indoline NIK inhibitors for multiple myeloma
Future Drug Discov, 2, 2020
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6YHV
 | | Structural insights into Pseudomonas aeruginosa Type six secretion system exported effector 8: unliganded Tse8 | | 分子名称: | COPPER (II) ION, Tse8 | | 著者 | Sainz-Polo, M.A, Capuni, R, Pretre, G, Gonzalez-Magana, A, Lucas, M, Altuna, J, Montanchez, I, Fucini, P, Albesa-Jove, D. | | 登録日 | 2020-03-31 | | 公開日 | 2020-11-04 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (1.893 Å) | | 主引用文献 | Structural insights into Pseudomonas aeruginosaType six secretion system exported effector 8.
J.Struct.Biol., 212, 2020
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3QWF
 | | Crystal structure of the 17beta-hydroxysteroid dehydrogenase from Cochliobolus lunatus | | 分子名称: | 17beta-hydroxysteroid dehydrogenase, GLYCEROL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | 著者 | Cassetta, A, Lamba, D, Krastanova, I, Stojan, J, Lanisnik-Rizner, T, Kristan, K, Brunskole, M. | | 登録日 | 2011-02-28 | | 公開日 | 2012-01-18 | | 最終更新日 | 2023-09-13 | | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | | 主引用文献 | Structural Studies on a Fungal 17Beta-Hydroxysteroid Dehydrogenase
Biochem.J., 441, 2012
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7ZBF
 | | Crystal structure of native Iripin-4 serpin from tick Ixodes ricinus | | 分子名称: | Iripin-4 serpin, NICKEL (II) ION | | 著者 | Kascakova, B, Kuta Smatanova, I, Chmelar, J, Prudnikova, T. | | 登録日 | 2022-03-23 | | 公開日 | 2023-04-05 | | 最終更新日 | 2024-02-07 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Conformational transition of the Ixodes ricinus salivary serpin Iripin-4.
Acta Crystallogr D Struct Biol, 79, 2023
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