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PDB: 150 results

5Z03
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BU of 5z03 by Molmil
Mutant (S106A) Escherichia coli L,D-carboxypeptidase A (LdcA)
Descriptor: Murein tetrapeptide carboxypeptidase
Authors:Meyer, K, Tame, J.R.H.
Deposit date:2017-12-18
Release date:2018-04-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.755 Å)
Cite:The crystal structure and oligomeric form of Escherichia colil,d-carboxypeptidase A.
Biochem. Biophys. Res. Commun., 499, 2018
7ZPZ
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BU of 7zpz by Molmil
Crystal structure of Pizza6-TSR-TSH with Silicotungstic Acid (STA) polyoxometalate
Descriptor: Keggin (STA), Pizza6-TSR-TSH
Authors:Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D.
Deposit date:2022-04-29
Release date:2023-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Mutational study of a symmetry matched protein-polyoxometalate interface
To be published
7ZQ2
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BU of 7zq2 by Molmil
Crystal structure of Pizza6-RSH-TSH with Silicotungstic Acid (STA) polyoxometalate
Descriptor: Keggin (STA), Pizza6-RSH-TSH
Authors:Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D.
Deposit date:2022-04-29
Release date:2023-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Mutational study of a symmetry matched protein-polyoxometalate interface
To be published
7ZQG
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BU of 7zqg by Molmil
Crystal structure of Pizza6-KSH-TSH with Silicotungstic Acid (STA) polyoxometalate
Descriptor: Keggin (STA), Pizza6-KSH-TSH
Authors:Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D.
Deposit date:2022-04-29
Release date:2023-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mutational study of a symmetry matched protein-polyoxometalate interface
To be published
7ZPW
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BU of 7zpw by Molmil
Crystal structure of Pizza6-TSK-TSH with Silicotungstic Acid (STA) polyoxometalate
Descriptor: Keggin (STA), Pizza6-TSK-TSH
Authors:Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D.
Deposit date:2022-04-29
Release date:2023-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mutational study of a symmetry matched protein-polyoxometalate interface.
To be published
7ZPH
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BU of 7zph by Molmil
Crystal structure of Pizza6-TNK-RSH with Silicotungstic Acid (STA) polyoxometalate
Descriptor: Keggin (STA), Pizza6-TNK-RSH
Authors:Wouters, S.M.L, Kamata, K, Takahashi, K, Vandebroek, L, Parac-Vogt, T.N, Tame, J.R.H, Voet, A.R.D.
Deposit date:2022-04-27
Release date:2023-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Mutational study of a symmetry matched protein-polyoxometalate interface
To be published
5CHB
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BU of 5chb by Molmil
Crystal structure of nvPizza2-S16H58 coordinating a CdCl2 nanocrystal
Descriptor: CADMIUM ION, CHLORIDE ION, SULFATE ION, ...
Authors:Voet, A.R.D, Noguchi, H, Addy, C, Zhang, K.Y.J, Tame, J.R.H.
Deposit date:2015-07-10
Release date:2015-07-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Biomineralization of a Cadmium Chloride Nanocrystal by a Designed Symmetrical Protein
Angew.Chem.Int.Ed.Engl., 54, 2015
6QSE
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BU of 6qse by Molmil
Crystal structure of Pizza6S in the presence of Anderson-Evans (TEW)
Descriptor: 6-tungstotellurate(VI), Pizza6S
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
6QSF
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BU of 6qsf by Molmil
Crystal structure of Pizza6S in the presence of Keggin (STA)
Descriptor: Keggin (STA), Pizza6S
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
6QSD
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BU of 6qsd by Molmil
Crystal structure of Pizza6S
Descriptor: Pizza6S, SULFATE ION
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
6QSH
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BU of 6qsh by Molmil
Crystal structure of the hybrid bioinorganic complex of Pizza6S linked by the 1:2 Ce-substituted Keggin
Descriptor: 1:2 Ce-substituted Keggin, Pizza6S
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
6QSG
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BU of 6qsg by Molmil
Crystal structure of the hybrid bioinorganic complex of Pizza6S and Keggin (STA)
Descriptor: Keggin (STA), Pizza6S
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
7VUR
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BU of 7vur by Molmil
Crystal structure of AlleyCat9 with calcium but no inhibitor
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, AlleyCat, CALCIUM ION
Authors:Margheritis, E, Takahashi, K, Korendovych, I.V, Tame, J.R.H.
Deposit date:2021-11-04
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
7VUC
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BU of 7vuc by Molmil
Myoglobin mutant L29I/H64G/V68A
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Takahashi, K, Korendovych, I.V, Tame, J.R.H.
Deposit date:2021-11-02
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:NMR-guided directed evolution.
Nature, 610, 2022
1WUB
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BU of 1wub by Molmil
Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus thermophilus HB8
Descriptor: (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE, conserved hypothetical protein TT1927b
Authors:Handa, N, Idaka, M, Terada, T, Hamana, H, Ishizuka, Y, Park, S.-Y, Tame, J.R.H, Doi-Katayama, Y, Hirota, H, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-03
Release date:2004-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8
Protein Sci., 14, 2005
5F53
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BU of 5f53 by Molmil
Nano-ring of cadmium ions coordinated by nvPizza2-S16S58
Descriptor: CADMIUM ION, CHLORIDE ION, NVPIZZA2-S16S58
Authors:Voet, A.R.D, Tame, J.R.H.
Deposit date:2015-12-04
Release date:2016-12-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A cadmium chloride ring created by a designed symmetrical protein
To Be Published
6G6P
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BU of 6g6p by Molmil
Crystal structure of the computationally designed Ika8 protein: crystal packing No.2 in P63
Descriptor: Ika8
Authors:Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
Deposit date:2018-04-01
Release date:2018-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6N
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BU of 6g6n by Molmil
Crystal structure of the computationally designed Tako8 protein in C2
Descriptor: Tako8
Authors:Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
Deposit date:2018-04-01
Release date:2018-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6M
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BU of 6g6m by Molmil
Crystal structure of the computationally designed Tako8 protein in P42212
Descriptor: SULFATE ION, Tako8
Authors:Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
Deposit date:2018-04-01
Release date:2018-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6Q
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BU of 6g6q by Molmil
Crystal structure of the computationally designed Ika4 protein
Descriptor: Ika4
Authors:Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
Deposit date:2018-04-01
Release date:2018-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6O
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BU of 6g6o by Molmil
Crystal structure of the computationally designed Ika8 protein: crystal packing No.1 in P63
Descriptor: GLYCEROL, Ika8
Authors:Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
Deposit date:2018-04-01
Release date:2018-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
2NOO
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BU of 2noo by Molmil
Crystal Structure of Mutant NikA
Descriptor: IODIDE ION, NICKEL (II) ION, Nickel-binding periplasmic protein
Authors:Addy, C, Ohara, M, Kawai, F, Kidera, A, Ikeguchi, M, Fuchigami, S, Osawa, M, Shimada, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
Deposit date:2006-10-26
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
3AK5
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BU of 3ak5 by Molmil
Hemoglobin protease (Hbp) passenger missing domain-2
Descriptor: CALCIUM ION, Hemoglobin-binding protease hbp
Authors:Nishimura, K, Park, S.-Y, Tame, J.R.H.
Deposit date:2010-07-07
Release date:2010-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Role of domains within the autotransporter Hbp/Tsh
Acta Crystallogr.,Sect.D, 66, 2010
3AQD
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BU of 3aqd by Molmil
Unliganded TRAP
Descriptor: Transcription attenuation protein mtrB
Authors:Malay, A.A.D, Watanabe, M, Heddle, J.G, Tame, J.R.H.
Deposit date:2010-10-29
Release date:2010-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Allostery in TRAP
To be Published
1WXR
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BU of 1wxr by Molmil
Crystal structure of Heme Binding protein, an autotransporter hemoglobine protease from pathogenic Escherichia coli
Descriptor: haemoglobin protease
Authors:Otto, B.R, Sijbrandi, R, Luirink, J, Oudega, B, Heddle, J.G, Mizutani, K, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-01-31
Release date:2005-03-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of heme binding protein, an autotransporter hemoglobin protease from pathogenic escherichia coli
J.Biol.Chem., 280, 2005

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