3WOA
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3woa by Molmil](/molmil-images/mine/3woa) | |
6JGJ
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 6jgj by Molmil](/molmil-images/mine/6jgj) | Crystal structure of the F99S/M153T/V163A/E222Q variant of GFP at 0.78 A | 分子名称: | Green fluorescent protein, MAGNESIUM ION | 著者 | Takaba, K, Tai, Y, Hanazono, Y, Miki, K, Takeda, K. | 登録日 | 2019-02-14 | 公開日 | 2019-04-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (0.78 Å) | 主引用文献 | Subatomic resolution X-ray structures of green fluorescent protein. Iucrj, 6, 2019
|
|
8WU5
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8wu5 by Molmil](/molmil-images/mine/8wu5) | The complex of CAG repeat sequence-specific binding cPIP and dsDNA with A-A mismatch | 分子名称: | (1^2Z,4^2Z,11^2Z,14^2Z,22^2Z,25^2Z,32^2Z,35^2Z,19R,40R)-1^1,4^1,11^1,14^1,22^1,25^1,32^1,35^1-octamethyl-2,5,9,12,15,20,23,26,30,33,36,41-dodecaoxo-1^1H,4^1H,11^1H,14^1H,22^1H,25^1H,32^1H,35^1H-3,6,10,13,16,21,24,27,31,34,37,42-dodecaaza-1(2,4),11,22,32(4,2)-tetraimidazola-4,14,25,35(4,2)-tetrapyrrolacyclodotetracontaphane-19,40-diaminium, DNA (5'-D(*GP*CP*(CBR)P*GP*AP*GP*CP*AP*GP*CP*AP*CP*GP*GP*C)-3') | 著者 | Abe, K, Takeda, K, Sugiyama, H. | 登録日 | 2023-10-20 | 公開日 | 2024-06-05 | 最終更新日 | 2024-06-12 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Structural Studies of a Complex of a CAG/CTG Repeat Sequence-Specific Binding Molecule and A-A-Mismatch-Containing DNA. Jacs Au, 4, 2024
|
|
5D8V
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5d8v by Molmil](/molmil-images/mine/5d8v) | Ultra-high resolution structure of high-potential iron-sulfur protein | 分子名称: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | 著者 | Hirano, Y, Takeda, K, Miki, K. | 登録日 | 2015-08-18 | 公開日 | 2016-05-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (0.48 Å) | 主引用文献 | Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 angstrom Nature, 534, 2016
|
|
5DHE
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5dhe by Molmil](/molmil-images/mine/5dhe) | Crystal structure of ChBD3 from Thermococcus kodakarensis KOD1 | 分子名称: | Chitinase, GLYCEROL | 著者 | Niwa, S, Hibi, M, Takeda, K, Miki, K. | 登録日 | 2015-08-30 | 公開日 | 2016-02-10 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1 Febs Lett., 590, 2016
|
|
6IED
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 6ied by Molmil](/molmil-images/mine/6ied) | Crystal structure of heme A synthase from Bacillus subtilis | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Heme A synthase, ... | 著者 | Niwa, S, Takeda, K, Kosugi, M, Tsutsumi, E, Miki, K. | 登録日 | 2018-09-13 | 公開日 | 2018-11-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Crystal structure of heme A synthase fromBacillus subtilis. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
|
|
5CXM
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5cxm by Molmil](/molmil-images/mine/5cxm) | Crystal structure of the cyanobacterial plasma membrane Rieske protein PetC3 from Synechocystis PCC 6803 | 分子名称: | Cytochrome b6/f complex iron-sulfur subunit, FE2/S2 (INORGANIC) CLUSTER, NICKEL (II) ION, ... | 著者 | Veit, S, Takeda, K, Miki, K, Roegner, M. | 登録日 | 2015-07-29 | 公開日 | 2016-08-03 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structural and functional characterisation of the cyanobacterial PetC3 Rieske protein family. Biochim. Biophys. Acta, 1857, 2016
|
|
4V8K
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 4v8k by Molmil](/molmil-images/mine/4v8k) | Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form | 分子名称: | BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CALCIUM ION, ... | 著者 | Niwa, S, Takeda, K, Wang-Otomo, Z.-Y, Miki, K. | 登録日 | 2013-11-22 | 公開日 | 2014-07-09 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (3.006 Å) | 主引用文献 | Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom Nature, 508, 2014
|
|
3FF5
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3ff5 by Molmil](/molmil-images/mine/3ff5) | Crystal structure of the conserved N-terminal domain of the peroxisomal matrix-protein-import receptor, Pex14p | 分子名称: | Peroxisomal biogenesis factor 14, decyl 2-trimethylazaniumylethyl phosphate | 著者 | Su, J.-R, Takeda, K, Tamura, S, Fujiki, Y, Miki, K. | 登録日 | 2008-12-01 | 公開日 | 2008-12-30 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p Proc.Natl.Acad.Sci.USA, 106, 2009
|
|
3HRX
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3hrx by Molmil](/molmil-images/mine/3hrx) | |
3M0V
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3m0v by Molmil](/molmil-images/mine/3m0v) | Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329L in complex with L-rhamnose | 分子名称: | L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION | 著者 | Yoshida, H, Takeda, K, Izumori, K, Kamitori, S. | 登録日 | 2010-03-03 | 公開日 | 2010-11-10 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.79 Å) | 主引用文献 | Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase Protein Eng.Des.Sel., 23, 2010
|
|
7VOS
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7vos by Molmil](/molmil-images/mine/7vos) | High-resolution neutron and X-ray joint refined structure of high-potential iron-sulfur protein in the oxidized state | 分子名称: | AMMONIUM ION, GLYCEROL, High-potential iron-sulfur protein, ... | 著者 | Hanazono, Y, Hirano, Y, Takeda, K, Kusaka, K, Tamada, T, Miki, K. | 登録日 | 2021-10-14 | 公開日 | 2022-06-01 | 最終更新日 | 2024-04-03 | 実験手法 | NEUTRON DIFFRACTION (0.66 Å), X-RAY DIFFRACTION | 主引用文献 | Revisiting the concept of peptide bond planarity in an iron-sulfur protein by neutron structure analysis. Sci Adv, 8, 2022
|
|
3M0X
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3m0x by Molmil](/molmil-images/mine/3m0x) | Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329L in complex with D-psicose | 分子名称: | D-psicose, L-rhamnose isomerase, MANGANESE (II) ION | 著者 | Yoshida, H, Takeda, K, Izumori, K, Kamitori, S. | 登録日 | 2010-03-03 | 公開日 | 2010-11-10 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.79 Å) | 主引用文献 | Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase Protein Eng.Des.Sel., 23, 2010
|
|
3M0M
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3m0m by Molmil](/molmil-images/mine/3m0m) | Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex with D-allose | 分子名称: | D-ALLOSE, L-rhamnose isomerase, MANGANESE (II) ION | 著者 | Yoshida, H, Takeda, K, Izumori, K, Kamitori, S. | 登録日 | 2010-03-03 | 公開日 | 2010-11-10 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase Protein Eng.Des.Sel., 23, 2010
|
|
3M0H
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3m0h by Molmil](/molmil-images/mine/3m0h) | Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex with L-rhamnose | 分子名称: | L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION | 著者 | Yoshida, H, Takeda, K, Izumori, K, Kamitori, S. | 登録日 | 2010-03-03 | 公開日 | 2010-11-10 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.58 Å) | 主引用文献 | Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase Protein Eng.Des.Sel., 23, 2010
|
|
3M0Y
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3m0y by Molmil](/molmil-images/mine/3m0y) | Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329A in complex with L-rhamnose | 分子名称: | L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION | 著者 | Yoshida, H, Takeda, K, Izumori, K, Kamitori, S. | 登録日 | 2010-03-03 | 公開日 | 2010-11-10 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase Protein Eng.Des.Sel., 23, 2010
|
|
3M0L
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3m0l by Molmil](/molmil-images/mine/3m0l) | Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex with D-psicose | 分子名称: | D-psicose, L-rhamnose isomerase, MANGANESE (II) ION | 著者 | Yoshida, H, Takeda, K, Izumori, K, Kamitori, S. | 登録日 | 2010-03-03 | 公開日 | 2010-11-10 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase Protein Eng.Des.Sel., 23, 2010
|
|
1BM1
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1bm1 by Molmil](/molmil-images/mine/1bm1) | CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE | 分子名称: | BACTERIORHODOPSIN, PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER, RETINAL | 著者 | Sato, H, Takeda, K, Tani, K, Hino, T, Okada, T, Nakasako, M, Kamiya, N, Kouyama, T. | 登録日 | 1998-07-28 | 公開日 | 1999-04-27 | 最終更新日 | 2023-08-02 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | Specific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin. Acta Crystallogr.,Sect.D, 55, 1999
|
|
7XJC
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7xjc by Molmil](/molmil-images/mine/7xjc) | Crystal structure of bacteriorhodopsin in the ground and K states after green laser irradiation | 分子名称: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | 著者 | Taguchi, S, Niwa, S, Takeda, K. | 登録日 | 2022-04-16 | 公開日 | 2023-03-01 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.33 Å) | 主引用文献 | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
|
|
7XJE
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7xje by Molmil](/molmil-images/mine/7xje) | Crystal structure of bacteriorhodopsin in the K state refined against the extrapolated dataset | 分子名称: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | 著者 | Taguchi, S, Niwa, S, Takeda, K. | 登録日 | 2022-04-16 | 公開日 | 2023-03-01 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.33 Å) | 主引用文献 | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
|
|
7XJD
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7xjd by Molmil](/molmil-images/mine/7xjd) | Crystal structure of bacteriorhodopsin in the ground state by red laser irradiation | 分子名称: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | 著者 | Taguchi, S, Niwa, S, Takeda, K. | 登録日 | 2022-04-16 | 公開日 | 2023-03-22 | 実験手法 | X-RAY DIFFRACTION (1.33 Å) | 主引用文献 | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin. Commun Biol, 6, 2023
|
|
7YRA
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7yra by Molmil](/molmil-images/mine/7yra) | Crystal structure of [2Fe-2S]-TtPetA | 分子名称: | CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, ... | 著者 | Tsutsumi, E, Niwa, S, Takeda, K. | 登録日 | 2022-08-09 | 公開日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (1.79 Å) | 主引用文献 | Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride. Commun Chem, 6, 2023
|
|
7YR9
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7yr9 by Molmil](/molmil-images/mine/7yr9) | Crystal structure of the immature form of TtPetA | 分子名称: | CHLORIDE ION, GLYCEROL, SULFATE ION, ... | 著者 | Tsutsumi, E, Niwa, S, Takeda, K. | 登録日 | 2022-08-09 | 公開日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride. Commun Chem, 6, 2023
|
|
5GV8
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5gv8 by Molmil](/molmil-images/mine/5gv8) | |
5GV7
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5gv7 by Molmil](/molmil-images/mine/5gv7) | |