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PDB: 42 results
3AOI
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BU of 3aoi by Molmil
RNA polymerase-Gfh1 complex (Crystal type 2)
Descriptor: Anti-cleavage anti-GreA transcription factor Gfh1, DNA (5'-D(*GP*GP*TP*CP*TP*GP*TP*AP*TP*CP*AP*CP*GP*AP*GP*CP*CP*A*CP*CP*GP*CP*CP*GP*CP*AP*T)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Tagami, S, Sekine, S, Kumarevel, T, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-09-30
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
Nature, 468, 2010
3AOH
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BU of 3aoh by Molmil
RNA polymerase-Gfh1 complex (Crystal type 1)
Descriptor: Anti-cleavage anti-GreA transcription factor Gfh1, DNA (5'-D(*GP*GP*TP*CP*TP*GP*TP*AP*TP*CP*AP*CP*GP*AP*GP*CP*CP*AP*CP*CP*GP*CP*CP*GP*CP*AP*T)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Tagami, S, Sekine, S, Kumarevel, T, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-09-28
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
Nature, 468, 2010
3WOF
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BU of 3wof by Molmil
Crystal structure of P23-45 gp39 (6-132) bound to Thermus thermophilus RNA polymerase beta-flap domain
Descriptor: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
Authors:Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.298 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOD
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BU of 3wod by Molmil
RNA polymerase-gp39 complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOE
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BU of 3woe by Molmil
Crystal structure of P23-45 gp39 (6-109) bound to Thermus thermophilus RNA polymerase beta-flap domain
Descriptor: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
Authors:Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
Deposit date:2013-12-26
Release date:2014-03-12
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
7DG7
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BU of 7dg7 by Molmil
DPBB domain of VCP-like ATPase from Methanopyrus kandleri
Descriptor: ATPase of the AAA+ class, IMIDAZOLE, ZINC ION
Authors:Yagi, S, Tagami, S.
Deposit date:2020-11-11
Release date:2021-09-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.604 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DBO
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BU of 7dbo by Molmil
DPBB domain of VCP-like ATPase from Thermoplasma acidophilum
Descriptor: SULFATE ION, VCP-like ATPase
Authors:Yagi, S, Tagami, S.
Deposit date:2020-10-21
Release date:2021-09-29
Last modified:2021-11-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DG9
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BU of 7dg9 by Molmil
DPBB domain of VCP-like ATPase from Aeropyrum pernix
Descriptor: Cell division control protein 48, AAA family, ZINC ION
Authors:Yagi, S, Tagami, S.
Deposit date:2020-11-11
Release date:2021-09-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
8H2M
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BU of 8h2m by Molmil
gp96 RNA polymerase from P23-45 phage (crystal 1)
Descriptor: Tape tail measure protein
Authors:Chaban, A, Sokolova, M.L, Tagami, S.
Deposit date:2022-10-06
Release date:2023-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.
Nat Commun, 15, 2024
8H2N
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BU of 8h2n by Molmil
gp96 RNA polymerase from P23-45 phage (crystal 2)
Descriptor: MAGNESIUM ION, Tape tail measure protein
Authors:Chaban, A, Sokolova, M.L, Tagami, S.
Deposit date:2022-10-06
Release date:2023-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (4.41 Å)
Cite:Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.
Nat Commun, 15, 2024
7DI1
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BU of 7di1 by Molmil
Crystal structure of the rationally designed mkDPBB_sym_86 protein
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, mkDPBB_sym_86 protein
Authors:Yagi, S, Tagami, S.
Deposit date:2020-11-18
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.097 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DI0
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BU of 7di0 by Molmil
Crystal structure of the rationally designed apDPBB_sym_79 protein
Descriptor: SULFATE ION, apDPBB_sym_79 protein
Authors:Yagi, S, Tagami, S.
Deposit date:2020-11-18
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
6JX3
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BU of 6jx3 by Molmil
Lasso peptide synthetase B1 complexed with the leader peptide
Descriptor: TfuA-Leader, TfuB1, ZINC ION
Authors:Sumida, T, Tagami, S.
Deposit date:2019-04-22
Release date:2019-06-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of Leader Peptide Recognition in Lasso Peptide Biosynthesis Pathway.
Acs Chem.Biol., 14, 2019
8JVV
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BU of 8jvv by Molmil
Crystal structure of the chimeric protein mkaL2_v1.1
Descriptor: mkaL2_v1.1
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published
8JVN
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BU of 8jvn by Molmil
Crystal structure of the mk2h_deltaMILPYS peptide homodimer, DZBB form
Descriptor: SULFATE ION, mk2h_deltaMILPYS
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.404 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published
8JVP
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BU of 8jvp by Molmil
Crystal structure of the dimeric DZBB fold protein Ph1
Descriptor: Ph1, SULFATE ION
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.302 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published
8JVQ
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BU of 8jvq by Molmil
Crystal structure of the dimeric RIFT fold protein Ph1_DG
Descriptor: CITRIC ACID, Ph1_DG, SULFATE ION
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published
8JVR
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BU of 8jvr by Molmil
Crystal structure of the dimeric RIFT fold protein Ph1_GG
Descriptor: ACETIC ACID, Ph1_GG, SULFATE ION
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.794 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published
7DXR
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BU of 7dxr by Molmil
Crystal structure of the mk2h peptide homodimer.
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, SULFATE ION, mk2h protein
Authors:Yagi, S, Tagami, S.
Deposit date:2021-01-20
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXS
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BU of 7dxs by Molmil
Crystal structure of the ap1h peptide homodimer.
Descriptor: SULFATE ION, ap1h protein
Authors:Yagi, S, Tagami, S.
Deposit date:2021-01-20
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
8JVO
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BU of 8jvo by Molmil
Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer, DZBB form
Descriptor: SULFATE ION, mk2h_deltaMILPYS
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published
8JVS
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BU of 8jvs by Molmil
Crystal structure of the chimeric protein tkoL2_v1
Descriptor: tkoL2_v1
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published
8JVX
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BU of 8jvx by Molmil
Crystal structure of the dimeric DZBB fold protein mkaL2_v1.2_Z
Descriptor: mkaL2_v1.2_Z
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published
8JVW
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BU of 8jvw by Molmil
Crystal structure of the dimeric DZBB fold protein tkoL2_v1.2_Z
Descriptor: GLYCINE, tkoL2_v1.2_Z
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.806 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published
8JVT
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BU of 8jvt by Molmil
Crystal structure of the chimeric protein mkaL2_v1
Descriptor: mkaL2_v1
Authors:Yagi, S, Tagami, S.
Deposit date:2023-06-28
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.106 Å)
Cite:Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins
To Be Published

 

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PDB entries from 2024-07-17

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