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PDB: 213 件
8K6T
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BU of 8k6t by Molmil
The minor pilin structure of FctB3 in Streptococcus
分子名称: FctB3, GLYCEROL
著者Takebe, K, Sangawa, T, Suzuki, M, Nakata, M.
登録日2023-07-25
公開日2023-12-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Analysis of FctB3 crystal structure and insight into its structural stabilization and pilin linkage mechanisms.
Arch.Microbiol., 206, 2023
5B35
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Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA
分子名称: (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, Bacteriorhodopsin, DECANE, ...
著者Mizohata, E, Nakane, T, Suzuki, M.
登録日2016-02-10
公開日2016-11-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
Proc.Natl.Acad.Sci.USA, 113, 2016
4YSC
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BU of 4ysc by Molmil
Completely oxidized structure of copper nitrite reductase from Alcaligenes faecalis
分子名称: CHLORIDE ION, COPPER (II) ION, Copper-containing nitrite reductase
著者Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-03-17
公開日2016-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
4YSR
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BU of 4ysr by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.6 MGy
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
著者Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-03-17
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSE
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BU of 4yse by Molmil
High resolution synchrotron structure of copper nitrite reductase from Alcaligenes faecalis
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-03-17
公開日2016-03-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4I
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BU of 5d4i by Molmil
Intact nitrite complex of a copper nitrite reductase determined by serial femtosecond crystallography
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
著者Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-08-07
公開日2016-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
1ISP
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BU of 1isp by Molmil
Crystal structure of Bacillus subtilis lipase at 1.3A resolution
分子名称: GLYCEROL, lipase
著者Kawasaki, K, Kondo, H, Suzuki, M, Ohgiya, S, Tsuda, S.
登録日2001-12-19
公開日2002-12-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
5D4H
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BU of 5d4h by Molmil
High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography
分子名称: ACETIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
著者Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-08-07
公開日2016-03-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4J
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BU of 5d4j by Molmil
Chloride-bound form of a copper nitrite reductase from Alcaligenes faecals
分子名称: ACETIC ACID, CHLORIDE ION, COPPER (II) ION, ...
著者Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
登録日2015-08-07
公開日2016-03-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5GQP
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BU of 5gqp by Molmil
Thaumatin Structure at pH 8.0, orthorhombic type1
分子名称: Thaumatin I
著者Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B.
登録日2016-08-08
公開日2017-08-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.296 Å)
主引用文献Thaumatin Structure at pH 8.0, orthorhombic type1
To Be Published
5GY6
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BU of 5gy6 by Molmil
Ribonuclease from Hericium erinaceus (RNase He1)
分子名称: Ribonuclease T1, ZINC ION
著者Kobayashi, H, Sangawa, T, Takebe, K, Itagaki, T, Motoyoshi, N, Suzuki, M.
登録日2016-09-21
公開日2017-09-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Ribonuclease from Hericium erinaceus (RNase He1)
To Be Published
1SQJ
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BU of 1sqj by Molmil
Crystal Structure Analysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH)
分子名称: oligoxyloglucan reducing-end-specific cellobiohydrolase
著者Yaoi, K, Kondo, H, Noro, N, Suzuki, M, Tsuda, S, Mitsuishi, Y.
登録日2004-03-19
公開日2004-07-20
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Tandem Repeat of a Seven-Bladed beta-Propeller Domain in Oligoxyloglucan Reducing-End-Specific Cellobiohydrolase
Structure, 12, 2004
1V5C
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BU of 1v5c by Molmil
The crystal structure of the inactive form chitosanase from Bacillus sp. K17 at pH3.7
分子名称: SULFATE ION, chitosanase
著者Adachi, W, Shimizu, S, Sunami, T, Fukazawa, T, Suzuki, M, Yatsunami, R, Nakamura, S, Takenaka, A.
登録日2003-11-22
公開日2004-12-07
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17
J.MOL.BIOL., 343, 2004
1V5D
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BU of 1v5d by Molmil
The crystal structure of the active form chitosanase from Bacillus sp. K17 at pH6.4
分子名称: PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID), chitosanase
著者Adachi, W, Shimizu, S, Sunami, T, Fukazawa, T, Suzuki, M, Yatsunami, R, Nakamura, S, Takenaka, A.
登録日2003-11-22
公開日2004-12-07
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17
J.MOL.BIOL., 343, 2004
7D5N
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BU of 7d5n by Molmil
Crystal structure of inositol dehydrogenase homolog complexed with NADH and myo-inositol from Azotobacter vinelandii
分子名称: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Oxidoreductase
著者Fukano, K, Ono, T, Suzuki, M, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S.
登録日2020-09-27
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of inositol dehydrogenase complexed with NADH and myo-inositol from Azotobacter vinelandii
To Be Published
7D5M
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BU of 7d5m by Molmil
Crystal structure of inositol dehydrogenase homolog complexed with NAD+ from Azotobacter vinelandii
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Oxidoreductase
著者Fukano, K, Ono, T, Suzuki, M, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S.
登録日2020-09-27
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of inositol dehydrogenase complexed with NAD+ from Azotobacter vinelandii
To Be Published
5WRB
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BU of 5wrb by Molmil
Crystal structure of hen egg-white lysozyme
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Sugahara, M, Suzuki, M, Masuda, T, Inoue, S, Nango, E.
登録日2016-12-01
公開日2017-12-20
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.013 Å)
主引用文献Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5WRC
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BU of 5wrc by Molmil
Crystal structure of proteinase K from Engyodontium album
分子名称: NITRATE ION, PRASEODYMIUM ION, Proteinase K
著者Sugahara, M, Nakane, T, Suzuki, M, Masuda, T, Inoue, S, Numata, K.
登録日2016-12-01
公開日2017-11-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
2DPF
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BU of 2dpf by Molmil
Crystal Structure of curculin1 homodimer
分子名称: Curculin, SULFATE ION
著者Kurimoto, E, Suzuki, M, Amemiya, E, Yamaguchi, Y, Nirasawa, S, Shimba, N, Xu, N, Kashiwagi, T, Kawai, M, Suzuki, E, Kato, K.
登録日2006-05-11
公開日2007-05-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Curculin Exhibits Sweet-tasting and Taste-modifying Activities through Its Distinct Molecular Surfaces.
J.Biol.Chem., 282, 2007
6LFE
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BU of 6lfe by Molmil
Rat-COMT, Nitecapone,SAM and Mg bond
分子名称: 3-(3,4-dihydroxy-5-nitrobenzylidene)pentane-2,4-dione, Catechol O-methyltransferase, DI(HYDROXYETHYL)ETHER, ...
著者Takebe, K, Iijima, H, Suzuki, M.
登録日2019-12-02
公開日2020-03-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of Catechol O-Methyltransferase Complexed with Nitecapone.
Chem Pharm Bull (Tokyo), 68, 2020
5Y1A
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BU of 5y1a by Molmil
HBP35 of Porphyromonas gingivalis
分子名称: 35 kDa hemin binding protein
著者Kakuda, S, Suzuki, M, Sato, K.
登録日2017-07-20
公開日2018-07-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system.
Mol. Microbiol., 110, 2018
6LS1
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BU of 6ls1 by Molmil
Ribonuclease from Hericium erinaceus active and GMP binding form
分子名称: DI(HYDROXYETHYL)ETHER, GUANOSINE, Ribonuclease T1, ...
著者Takebe, K, Suzuki, M, Sangawa, T, Kobayashi, H, Itagaki, T.
登録日2020-01-16
公開日2021-01-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Ribonuclease from Hericium erinaceus active and GMP binding form
To Be Published
5B1G
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BU of 5b1g by Molmil
Crystal structure of hen egg-white lysozyme
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Sugahara, M, Suzuki, M, Nango, E.
登録日2015-12-03
公開日2016-12-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of hen egg-white lysozyme
To Be Published
5B1D
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BU of 5b1d by Molmil
Crystal structure of proteinase K from Engyodontium album
分子名称: CALCIUM ION, Proteinase K
著者Sugahara, M, Suzuki, M, Numata, K.
登録日2015-12-03
公開日2016-12-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of proteinase K from Engyodontium album
To Be Published
5B1F
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BU of 5b1f by Molmil
Crystal structure of hen egg-white lysozyme
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Sugahara, M, Suzuki, M, Nango, E.
登録日2015-12-03
公開日2016-12-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of hen egg-white lysozyme
To Be Published

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