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PDB: 1135 件

7MPL
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Bartonella henselae NrnC bound to pGG
分子名称: 5'-phosphorylated GG, NanoRNase C
著者Lormand, J.D, Sondermann, H.
登録日2021-05-04
公開日2021-09-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
3MCD
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Crystal structure of Helicobacter pylori MinE, a cell division topological specificity factor
分子名称: Cell division topological specificity factor
著者Kang, G.B, Song, H.E, Kim, M.K, Youn, H.S, Lee, J.G, An, J.Y, Jeon, H, Chun, J.S, Eom, S.H.
登録日2010-03-29
公開日2010-05-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of Helicobacter pylori MinE, a cell division topological specificity factor
Mol.Microbiol., 76, 2010
6MJT
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Azurin 122F/124W/126Re
分子名称: (1,10 PHENANTHROLINE)-(TRI-CARBON MONOXIDE) RHENIUM (I), Azurin, COPPER (II) ION
著者Takematsu, K, Zalis, S, Gray, H.B, Vlcek, A, Winkler, J.R, Williamson, H, Kaiser, J.T, Heyda, J, Hollas, D.
登録日2018-09-21
公開日2019-02-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.893 Å)
主引用文献Two Tryptophans Are Better Than One in Accelerating Electron Flow through a Protein.
ACS Cent Sci, 5, 2019
6MJR
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Azurin 122W/124F/126Re
分子名称: (1,10 PHENANTHROLINE)-(TRI-CARBON MONOXIDE) RHENIUM (I), Azurin, COPPER (II) ION
著者Takematsu, K, Zalis, S, Gray, H.B, Vlcek, A, Winkler, J.R, Williamson, H, Kaiser, J.T, Heyda, J, Hollas, D.
登録日2018-09-21
公開日2019-02-20
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2.012 Å)
主引用文献Two Tryptophans Are Better Than One in Accelerating Electron Flow through a Protein.
ACS Cent Sci, 5, 2019
3KTI
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BU of 3kti by Molmil
Structure of ClpP in complex with ADEP1
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide 1, ...
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2013-02-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
6FK5
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BU of 6fk5 by Molmil
Structure of 3' phosphatase NExo (D146N) from Neisseria bound to DNA substrate in presence of magnesium ion
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(P*CP*TP*AP*GP*CP*GP*AP*AP*GP*CP*TP*AP*GP*A)-3'), MAGNESIUM ION, ...
著者Silhan, J, Zhao, Q, Boura, E, Thomson, H, Foster, A, Tang, C.M, Freemont, P.S, Baldwin, G.S.
登録日2018-01-23
公開日2018-10-31
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structural basis for recognition and repair of the 3'-phosphate by NExo, a base excision DNA repair nuclease from Neisseria meningitidis.
Nucleic Acids Res., 46, 2018
6FKE
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Structure of 3' phosphatase NExo (D146N) from Neisseria bound to product DNA hairpin
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*GP*TP*AP*GP*CP*GP*AP*AP*GP*CP*TP*A)-3'), Exodeoxyribonuclease III, ...
著者Silhan, J, Zhao, Q, Boura, E, Thomson, H, Foster, A, Tang, C.M, Freemont, P.S, Baldwin, G.S.
登録日2018-01-23
公開日2018-10-31
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.151 Å)
主引用文献Structural basis for recognition and repair of the 3'-phosphate by NExo, a base excision DNA repair nuclease from Neisseria meningitidis.
Nucleic Acids Res., 46, 2018
6FK4
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BU of 6fk4 by Molmil
Structure of 3' phosphatase NExo (WT) from Neisseria bound to DNA substrate
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(P*GP*CP*TP*AP*GP*CP*GP*AP*AP*GP*CP*TP*AP*GP*A)-3'), Exodeoxyribonuclease III
著者Silhan, J, Zhao, Q, Boura, E, Thomson, H, Foster, A, Tang, C.M, Freemont, P.S, Baldwin, G.S.
登録日2018-01-23
公開日2018-10-31
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.297 Å)
主引用文献Structural basis for recognition and repair of the 3'-phosphate by NExo, a base excision DNA repair nuclease from Neisseria meningitidis.
Nucleic Acids Res., 46, 2018
3KTK
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Structure of ClpP in complex with ADEP2 in triclinic crystal form
分子名称: ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide 2
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2012-12-12
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
2ZJG
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BU of 2zjg by Molmil
Crystal structural of mouse kynurenine aminotransferase III
分子名称: GLYCEROL, Kynurenine-oxoglutarate transaminase 3
著者Han, Q, Cai, T, Tagle, D.A, Robinson, H, Li, J.
登録日2008-03-07
公開日2009-01-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural and functional characterization of mouse kynurenine aminotransferase III
To be Published
3KTG
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Structure of ClpP from Bacillus subtilis in monoclinic crystal form
分子名称: ATP-dependent Clp protease proteolytic subunit
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
6MJS
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BU of 6mjs by Molmil
Azurin 122W/124W/126Re
分子名称: (1,10 PHENANTHROLINE)-(TRI-CARBON MONOXIDE) RHENIUM (I), Azurin, COPPER (II) ION
著者Takematsu, K, Zalis, S, Gray, H.B, Vlcek, A, Winkler, J.R, Williamson, H, Kaiser, J.T, Heyda, J, Hollas, D.
登録日2018-09-21
公開日2019-02-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Two Tryptophans Are Better Than One in Accelerating Electron Flow through a Protein.
ACS Cent Sci, 5, 2019
3ZYP
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BU of 3zyp by Molmil
Cellulose induced protein, Cip1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CIP1, ...
著者Jacobson, F, Karkehabadi, S, Hansson, H, Goedegebuur, F, Wallace, L, Mitchinson, C, Piens, K, Stals, I, Sandgren, M.
登録日2011-08-24
公開日2012-09-12
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The Crystal Structure of the Core Domain of a Cellulose Induced Protein (Cip1) from Hypocrea Jecorina, at 1.5 A Resolution.
Plos One, 8, 2013
5VMY
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BU of 5vmy by Molmil
Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a hemi CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)
分子名称: CHLORIDE ION, DNA (5'-D(*CP*GP*TP*TP*AP*TP*TP*CP*GP*CP*GP*GP*GP*AP*AP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*TP*TP*CP*CP*(5CM)P*GP*(5CM)P*GP*AP*AP*TP*AP*AP*CP*G)-3'), ...
著者Nikolova, E.N, Stanfield, R.L, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E.
登録日2017-04-28
公開日2018-04-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso.
Biochemistry, 57, 2018
5VMW
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BU of 5vmw by Molmil
Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)
分子名称: CHLORIDE ION, DNA (5'-D(*CP*GP*TP*TP*AP*TP*TP*(5CM)P*GP*(5CM)P*GP*GP*GP*AP*AP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*TP*TP*CP*CP*(5CM)P*GP*(5CM)P*GP*AP*AP*TP*AP*AP*CP*G)-3'), ...
著者Nikolova, E.N, Stanfield, R.L, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E.
登録日2017-04-28
公開日2018-04-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.397 Å)
主引用文献CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso.
Biochemistry, 57, 2018
8G68
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BU of 8g68 by Molmil
Wildtype PTP1b in complex with DES5742
分子名称: 4-(3-ethyl-5-methyl-1H-pyrazol-1-yl)aniline, Tyrosine-protein phosphatase non-receptor type 1
著者Greisman, J.B, Willmore, L, Yeh, C.Y, Giordanetto, F, Shahamadtar, S, Nisonoff, H, Maragakis, P, Shaw, D.E.
登録日2023-02-14
公開日2023-04-26
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Discovery and Validation of the Binding Poses of Allosteric Fragment Hits to Protein Tyrosine Phosphatase 1b: From Molecular Dynamics Simulations to X-ray Crystallography.
J.Chem.Inf.Model., 63, 2023
6JRL
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BU of 6jrl by Molmil
Crystal structure of Drosophila alpha methyldopa-resistant protein/3,4-dihydroxyphenylacetaldehyde synthase
分子名称: 3,4-dihydroxyphenylacetaldehyde synthase
著者Wei, S, Vavrick, C.J, Guan, H, Liao, C, Robinson, H, Liang, J, Wang, D, Han, Q, Li, J.
登録日2019-04-04
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the bifunctional mechanism of Drosophila alpha methyldopa-resistant protein/3,4-dihydroxyphenylacetaldehyde synthase
To Be Published
3KU7
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BU of 3ku7 by Molmil
Crystal structure of Helicobacter pylori MinE, a cell division topological specificity factor
分子名称: Cell division topological specificity factor
著者Kang, G.B, Song, H.E, Kim, M.K, Eom, S.H.
登録日2009-11-26
公開日2010-05-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of Helicobacter pylori MinE, a cell division topological specificity factor
Mol.Microbiol., 76, 2010
2A9C
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BU of 2a9c by Molmil
Crystal structure of R138Q mutant of recombinant chicken sulfite oxidase with the bound product, sulfate, at the active site
分子名称: GLYCEROL, MOLYBDENUM ATOM, PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER, ...
著者Karakas, E, Wilson, H.L, Graf, T.N, Xiang, S, Jaramillo-Busquets, S, Rajagopalan, K.V, Kisker, C.
登録日2005-07-11
公開日2005-08-02
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.505 Å)
主引用文献Structural insights into sulfite oxidase deficiency
J.Biol.Chem., 280, 2005
2A9D
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BU of 2a9d by Molmil
Crystal structure of recombinant chicken sulfite oxidase with Arg at residue 161
分子名称: MOLYBDENUM ATOM, PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER, SULFATE ION, ...
著者Karakas, E, Wilson, H.L, Graf, T.N, Xiang, S, Jaramillo-Busquets, S, Rajagopalan, K.V, Kisker, C.
登録日2005-07-11
公開日2005-08-02
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献Structural insights into sulfite oxidase deficiency
J.Biol.Chem., 280, 2005
3LFV
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BU of 3lfv by Molmil
crystal structure of unliganded PDE5A GAF domain
分子名称: cGMP-specific 3',5'-cyclic phosphodiesterase
著者Wang, H, Robinson, H, Ke, H.
登録日2010-01-18
公開日2010-09-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Conformation changes, N-terminal involvement, and cGMP signal relay in the phosphodiesterase-5 GAF domain.
J.Biol.Chem., 285, 2010
3K3E
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BU of 3k3e by Molmil
Crystal structure of the PDE9A catalytic domain in complex with (R)-BAY73-6691
分子名称: 1-(2-chlorophenyl)-6-[(2R)-3,3,3-trifluoro-2-methylpropyl]-1,7-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one, High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, MAGNESIUM ION, ...
著者Wang, H, Luo, X, Ye, M, Hou, J, Robinson, H, Ke, H.
登録日2009-10-02
公開日2010-02-16
最終更新日2013-11-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Insight into Binding of Phosphodiesterase-9A Selective Inhibitors by Crystal Structures and Mutagenesis
J.Med.Chem., 53, 2010
7MQD
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BU of 7mqd by Molmil
Bartonella henselae NrnC complexed with pAGG. D4 symmetry.
分子名称: NanoRNase C, RNA (5'-R(P*AP*GP*G)-3')
著者Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
登録日2021-05-05
公開日2021-09-15
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQB
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BU of 7mqb by Molmil
Bartonella henselae NrnC bound to pGG. D4 Symmetry
分子名称: NanoRNase C, RNA (5'-R(P*GP*G)-3')
著者Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
登録日2021-05-05
公開日2021-09-15
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQC
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BU of 7mqc by Molmil
Bartonella henselae NrnC bound to pGG. C1 reconstruction.
分子名称: NanoRNase C, RNA (5'-R(P*GP*G)-3')
著者Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
登録日2021-05-05
公開日2021-09-15
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.64 Å)
主引用文献Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021

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