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PDB: 632 results

7NII
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BU of 7nii by Molmil
Wzc-K540M MgADP C1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative transmembrane protein Wzc
Authors:Naismith, J.H, Liu, J.W, Yang, Y.
Deposit date:2021-02-12
Release date:2021-08-25
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:The molecular basis of regulation of bacterial capsule assembly by Wzc.
Nat Commun, 12, 2021
1QD9
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BU of 1qd9 by Molmil
Bacillus subtilis YABJ
Descriptor: ACETIC ACID, ETHYL MERCURY ION, MERCURY (II) ION, ...
Authors:Smith, J.L, Sinha, S, Rappu, P, Lange, S.C, Mantsala, P, Zalkin, H.
Deposit date:1999-07-09
Release date:1999-11-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Bacillus subtilis YabJ, a purine regulatory protein and member of the highly conserved YjgF family.
Proc.Natl.Acad.Sci.USA, 96, 1999
7NHS
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BU of 7nhs by Molmil
Wzc K540M C8
Descriptor: Putative transmembrane protein Wzc
Authors:Naismith, J.H, Liu, J.W, Yang, Y.
Deposit date:2021-02-11
Release date:2021-08-25
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:The molecular basis of regulation of bacterial capsule assembly by Wzc.
Nat Commun, 12, 2021
7NI2
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BU of 7ni2 by Molmil
Wzc-K540M-4YE C8
Descriptor: Tyrosine-protein kinase
Authors:Naismith, J.H, Liu, J.W, Yang, Y.
Deposit date:2021-02-11
Release date:2021-08-25
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:The molecular basis of regulation of bacterial capsule assembly by Wzc.
Nat Commun, 12, 2021
7NIB
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BU of 7nib by Molmil
Wzc-K540M-4YE C1
Descriptor: Tyrosine-protein kinase
Authors:Naismith, J.H, Liu, J.W, Yang, Y.
Deposit date:2021-02-11
Release date:2021-08-25
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:The molecular basis of regulation of bacterial capsule assembly by Wzc.
Nat Commun, 12, 2021
1DSM
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BU of 1dsm by Molmil
(-)-duocarmycin SA covalently linked to duplex DNA
Descriptor: 4-HYDROXY-8-METHYL-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER, 5'-D(*GP*AP*CP*TP*AP*AP*TP*TP*GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*AP*TP*TP*AP*GP*TP*C)-3'
Authors:Smith, J.A, Case, D.A, Chazin, W.J.
Deposit date:1999-03-27
Release date:1999-04-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The structural basis for in situ activation of DNA alkylation by duocarmycin SA
J.Mol.Biol., 300, 2000
5FFM
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BU of 5ffm by Molmil
Yellow fever virus helicase
Descriptor: Serine protease NS3
Authors:Smith, J.L.
Deposit date:2015-12-18
Release date:2015-12-30
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the Flavivirus helicase: implications for catalytic activity, protein interactions, and proteolytic processing.
J. Virol., 79, 2005
1GPH
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BU of 1gph by Molmil
STRUCTURE OF THE ALLOSTERIC REGULATORY ENZYME OF PURINE BIOSYNTHESIS
Descriptor: ADENOSINE MONOPHOSPHATE, GLUTAMINE PHOSPHORIBOSYL-PYROPHOSPHATE AMIDOTRANSFERASE, IRON/SULFUR CLUSTER
Authors:Smith, J.L.
Deposit date:1994-04-20
Release date:1994-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the allosteric regulatory enzyme of purine biosynthesis.
Science, 264, 1994
7N2T
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BU of 7n2t by Molmil
O-acetylserine sulfhydrylase from Citrullus vulgaris in the internal aldimine state, with citrate bound
Descriptor: CITRIC ACID, Cysteine synthase, PENTAETHYLENE GLYCOL, ...
Authors:Smith, J.L, Buller, A.R, Bingman, C.A.
Deposit date:2021-05-29
Release date:2022-07-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Investigation of beta-Substitution Activity of O-Acetylserine Sulfhydrolase from Citrullus vulgaris.
Chembiochem, 23, 2022
1D0T
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BU of 1d0t by Molmil
SOLUTION STRUCTURE OF A PHOSPHOROTHIOATE MODIFIED RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
Descriptor: PHOSPHOROTHIOATE SUBSTITUTED PHAGE MS2 RNA BINDING SITE
Authors:Smith, J.S, Nikonowicz, E.P.
Deposit date:1999-09-14
Release date:2000-05-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
6YZ5
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BU of 6yz5 by Molmil
H11-D4 complex with SARS-CoV-2 RBD
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Naismith, J.H, Huo, J, Mikolajek, H, Ward, P, Dumoux, M, Owens, R.J, Le Bas, A.
Deposit date:2020-05-06
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:H11-D4 complex with SARS-CoV-2 RBD
To Be Published
6Z3C
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BU of 6z3c by Molmil
High resolution structure of RgNanOx
Descriptor: CITRATE ANION, Gfo/Idh/MocA family oxidoreductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Naismith, J.H, Lee, M.O.
Deposit date:2020-05-19
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Uncovering a novel molecular mechanism for scavenging sialic acids in bacteria.
J.Biol.Chem., 295, 2020
6Z3B
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BU of 6z3b by Molmil
Low resolution structure of RgNanOx
Descriptor: CITRIC ACID, Gfo/Idh/MocA family oxidoreductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Naismith, J.H, Lee, M.
Deposit date:2020-05-19
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Uncovering a novel molecular mechanism for scavenging sialic acids in bacteria.
J.Biol.Chem., 295, 2020
6YQQ
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BU of 6yqq by Molmil
ForT-PRPP complex
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, CHLORIDE ION, ForT-PRPP complex, ...
Authors:Naismith, J.H, Gao, S.
Deposit date:2020-04-18
Release date:2020-05-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis: crystal structure of a C-glycoside synthase/PRPP complex.
Chem.Commun.(Camb.), 56, 2020
6Y47
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BU of 6y47 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with BCV-L5
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Ferric enterobactin receptor, ...
Authors:Naismith, J.H, Moynie, L.M.
Deposit date:2020-02-19
Release date:2021-01-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
1D0U
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BU of 1d0u by Molmil
SOLUTION STRUCTURE OF AN RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
Descriptor: PHAGE MS2 RNA BINDING SITE
Authors:Smith, J.S, Nikonowicz, E.P.
Deposit date:1999-09-14
Release date:2000-05-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
6YZ7
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BU of 6yz7 by Molmil
H11-D4, SARS-CoV-2 RBD, CR3022 ternary complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody Cr3022, Antibody light chain, ...
Authors:Naismith, J.H, Ren, J, Zhou, D, Zhao, Y, Stuart, D.I.
Deposit date:2020-05-06
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural characterisation of a nanobody derived from a naive library that neutralises SARS-CoV-2
To Be Published, 2020
6Z2M
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BU of 6z2m by Molmil
H11-D4, SARS-CoV-2 RBD, CR3022 ternary complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CR3022 antibody, Spike glycoprotein, ...
Authors:Naismith, J.H, Ren, J, Zhou, D, Zhao, Y, Stuart, D.I.
Deposit date:2020-05-17
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structural characterisation of a nanobody derived from a naive library that neutralises SARS-CoV-2
To Be Published
6Z33
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BU of 6z33 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with BCV
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Ferric enterobactin receptor, ...
Authors:Naismith, J.H, Moynie, L.M.
Deposit date:2020-05-19
Release date:2020-07-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.711 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
6Z2N
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BU of 6z2n by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with BCV-L6
Descriptor: 1,2-ETHANEDIOL, BCV-L6, FE (III) ION, ...
Authors:Naismith, J.H, Moynie, L.M.
Deposit date:2020-05-18
Release date:2021-01-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.029 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
6YY5
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BU of 6yy5 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with TCV_L5
Descriptor: FE (III) ION, Ferric enterobactin receptor, ~{N}-[2-[[(2~{S})-3-[[(2~{S})-3-[[1-[2-[2-[2-[4-[4-[5-(acetamidomethyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]-2-fluoranyl-phenyl]piperazin-1-yl]-2-oxidanylidene-ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methylamino]-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-propyl]amino]-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-propyl]amino]-2-oxidanylidene-ethyl]-2,3-bis(oxidanyl)benzamide
Authors:Naismith, J.H, Moynie, L.M.
Deposit date:2020-05-04
Release date:2020-07-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.717 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
7S3N
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BU of 7s3n by Molmil
SARS-CoV-2 S stem helix peptide bound to Fab22
Descriptor: Fab22 Heavy Chain, Fab22 Light Chain, Spike glycoprotein
Authors:Goldsmith, J.A, McLellan, J.S.
Deposit date:2021-09-07
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Stabilized coronavirus spike stem elicits a broadly protective antibody.
Cell Rep, 37, 2021
7S3M
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BU of 7s3m by Molmil
MERS-CoV S stem helix peptide bound to Fab22
Descriptor: Fab22 Heavy Chain, Fab22 Light Chain, Spike glycoprotein
Authors:Goldsmith, J.A, McLellan, J.S.
Deposit date:2021-09-07
Release date:2021-10-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Stabilized coronavirus spike stem elicits a broadly protective antibody.
Cell Rep, 37, 2021
5N0O
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BU of 5n0o by Molmil
Crystal structure of Seleno-OphA-DeltaC18 in complex with SAM
Descriptor: 1,2-ETHANEDIOL, L-HOMOSERINE, Peptide N-methyltransferase, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2017-02-03
Release date:2018-02-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
7L3N
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BU of 7l3n by Molmil
SARS-CoV 2 Spike Protein bound to LY-CoV555
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LY-CoV555 Fab heavy chain, ...
Authors:Goldsmith, J.A, McLellan, J.S.
Deposit date:2020-12-18
Release date:2021-02-03
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:LY-CoV555, a rapidly isolated potent neutralizing antibody, provides protection in a non-human primate model of SARS-CoV-2 infection.
Biorxiv, 2020

226707

數據於2024-10-30公開中

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