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PDB: 375 件
7V6I
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Crystal structure of lacto-N-biosidase BsaX from Bifidobacterium saguini, lacto-N-biose complex
分子名称: Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Yamada, C, Fushinobu, S.
登録日2021-08-20
公開日2022-02-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Crystal structures of glycoside hydrolase family 136 lacto-N-biosidases from monkey gut- and human adult gut bacteria.
Biosci.Biotechnol.Biochem., 86, 2022
5XB7
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GH42 alpha-L-arabinopyranosidase from Bifidobacterium animalis subsp. lactis Bl-04
分子名称: Beta-galactosidase, GLYCEROL, SULFATE ION
著者Viborg, A.H, Katayama, T, Arakawa, T, Abou Hachem, M, Lo Leggio, L, Kitaoka, M, Svensson, B, Fushinobu, S.
登録日2017-03-16
公開日2017-11-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Discovery of alpha-l-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42.
J. Biol. Chem., 292, 2017
7VFR
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GltA N83K mutant from Bifidobacterium infantis JCM 1222 complexed with lacto-N-tetraose
分子名称: Extracellular solute-binding protein, family 1, SULFATE ION, ...
著者Sato, M, Sakanaka, M, Katayama, T, Fushinobu, S.
登録日2021-09-13
公開日2022-09-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Short stretch sequence of a milk oligosaccharide transporter represents the phenotypic selection trajectory in infant gut microbiome
To Be Published
7VFQ
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Wild type GltA from Bifidobacterium infantis JCM 1222 complexed with lacto-N-tetraose
分子名称: Extracellular solute-binding protein, family 1, SULFATE ION, ...
著者Sato, M, Sakanaka, M, Katayama, T, Fushinobu, S.
登録日2021-09-13
公開日2022-09-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Short stretch sequence of a milk oligosaccharide transporter represents the phenotypic selection trajectory in infant gut microbiome
To Be Published
5H3Z
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Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Nakajima, M, Tanaka, N, Furukawa, N, Nihira, T, Kodutsumi, Y, Takahashi, Y, Sugimoto, N, Miyanaga, A, Fushinobu, S, Taguchi, H, Nakai, H.
登録日2016-10-28
公開日2017-03-01
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5YB7
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BU of 5yb7 by Molmil
L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-ornithine complex
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase/monooxygenase, L-ornithine
著者Im, D, Matsui, D, Arakawa, T, Isobe, K, Asano, Y, Fushinobu, S.
登録日2017-09-03
公開日2018-02-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Ligand complex structures of l-amino acid oxidase/monooxygenase from
FEBS Open Bio, 8, 2018
5YHS
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Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, apo form
分子名称: Pyruvylated beta-D-galactosidase
著者Tanuma, M, Yamada, C, Arakawa, T, Higuchi, Y, Takegawa, K, Fushinobu, S.
登録日2017-09-29
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose.
Sci Rep, 8, 2018
5H42
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Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with alpha-d-glucose-1-phosphate
分子名称: 1-O-phosphono-alpha-D-glucopyranose, Uncharacterized protein, alpha-D-glucopyranose
著者Nakajima, M, Tanaka, N, Furukawa, N, Nihira, T, Kodutsumi, Y, Takahashi, Y, Sugimoto, N, Miyanaga, A, Fushinobu, S, Taguchi, H, Nakai, H.
登録日2016-10-28
公開日2017-03-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5YIF
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Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, E163A mutant pyruvylated beta-D-galactose complex
分子名称: (2R,4aR,6R,7R,8R,8aR)-2-methyl-6,7,8-tris(oxidanyl)-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxine-2-carboxylic acid, Pyruvylated beta-D-galactosidase
著者Tanuma, M, Yamada, C, Arakawa, T, Higuchi, Y, Takegawa, K, Fushinobu, S.
登録日2017-10-04
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose.
Sci Rep, 8, 2018
5YB6
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L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-lysine complex
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase/monooxygenase, ...
著者Im, D, Matsui, D, Arakawa, T, Isobe, K, Asano, Y, Fushinobu, S.
登録日2017-09-03
公開日2018-02-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Ligand complex structures of l-amino acid oxidase/monooxygenase from
FEBS Open Bio, 8, 2018
5YSD
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BU of 5ysd by Molmil
Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophorotriose
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Lin1841 protein, MAGNESIUM ION, ...
著者Abe, K, Nakajima, M, Taguchi, H, Arakawa, T, Fushinobu, S.
登録日2017-11-14
公開日2018-05-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293, 2018
5YSF
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Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophoropentaose
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Lin1841 protein, MAGNESIUM ION, ...
著者Abe, K, Nakajima, M, Taguchi, H, Arakawa, T, Fushinobu, S.
登録日2017-11-14
公開日2018-05-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293, 2018
5YB8
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L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-arginine complex
分子名称: ARGININE, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase/monooxygenase
著者Im, D, Matsui, D, Arakawa, T, Isobe, K, Asano, Y, Fushinobu, S.
登録日2017-09-03
公開日2018-02-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Ligand complex structures of l-amino acid oxidase/monooxygenase from
FEBS Open Bio, 8, 2018
5YSE
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BU of 5yse by Molmil
Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophorotetraose
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Lin1841 protein, MAGNESIUM ION, ...
著者Abe, K, Nakajima, M, Taguchi, H, Arakawa, T, Fushinobu, S.
登録日2017-11-14
公開日2018-05-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293, 2018
5YSB
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Crystal structure of beta-1,2-glucooligosaccharide binding protein in ligand-free form
分子名称: DI(HYDROXYETHYL)ETHER, Lin1841 protein, ZINC ION
著者Abe, K, Nakajima, M, Taguchi, H, Arakawa, T, Fushinobu, S.
登録日2017-11-13
公開日2018-05-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293, 2018
6A3J
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BU of 6a3j by Molmil
Levoglucosan dehydrogenase, complex with NADH and L-sorbose
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Putative dehydrogenase, ...
著者Sugiura, M, Yamada, C, Arakawa, T, Fushinobu, S.
登録日2018-06-15
公開日2018-09-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase.
J. Biol. Chem., 293, 2018
6A3F
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Levoglucosan dehydrogenase, apo form
分子名称: Putative dehydrogenase, SULFATE ION
著者Sugiura, M, Yamada, C, Arakawa, T, Fushinobu, S.
登録日2018-06-15
公開日2018-09-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase.
J. Biol. Chem., 293, 2018
6A3I
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Levoglucosan dehydrogenase, complex with NADH and levoglucosan
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Levoglucosan, Putative dehydrogenase
著者Sugiura, M, Yamada, C, Arakawa, T, Fushinobu, S.
登録日2018-06-15
公開日2018-09-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase.
J. Biol. Chem., 293, 2018
5H41
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Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose, isofagomine, sulfate ion
分子名称: 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, SULFATE ION, Uncharacterized protein, ...
著者Nakajima, M, Tanaka, N, Furukawa, N, Nihira, T, Kodutsumi, Y, Takahashi, Y, Sugimoto, N, Miyanaga, A, Fushinobu, S, Taguchi, H, Nakai, H.
登録日2016-10-28
公開日2017-03-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5H40
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Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose
分子名称: CALCIUM ION, GLYCEROL, Uncharacterized protein, ...
著者Nakajima, M, Tanaka, N, Furukawa, N, Nihira, T, Kodutsumi, Y, Takahashi, Y, Sugimoto, N, Miyanaga, A, Fushinobu, S, Taguchi, H, Nakai, H.
登録日2016-10-28
公開日2017-03-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
3E5J
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BU of 3e5j by Molmil
Crystal structure of CYP105P1 wild-type ligand-free form
分子名称: Cytochrome P450 (Cytochrome P450 hydroxylase), PROTOPORPHYRIN IX CONTAINING FE
著者Xu, L.H, Fushinobu, S, Ikeda, H, Wakagi, T, Shoun, H.
登録日2008-08-14
公開日2008-12-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structures of cytochrome P450 105P1 from Streptomyces avermitilis: conformational flexibility and histidine ligation state
J.Bacteriol., 191, 2009
6A3G
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Levoglucosan dehydrogenase, complex with NADH
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Putative dehydrogenase
著者Sugiura, M, Yamada, C, Arakawa, T, Fushinobu, S.
登録日2018-06-15
公開日2018-09-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase.
J. Biol. Chem., 293, 2018
7WDT
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BU of 7wdt by Molmil
6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with GlcNAc-6S
分子名称: 2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucopyranose, 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose, Beta-N-acetylhexosaminidase, ...
著者Yamada, C, Kashima, T, Fushinobu, S, Katoh, T, Katayama, T.
登録日2021-12-22
公開日2022-12-28
最終更新日2023-06-14
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem.
Nat.Chem.Biol., 19, 2023
7WDU
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BU of 7wdu by Molmil
6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with PUGNAc-6S
分子名称: Beta-N-acetylhexosaminidase, CALCIUM ION, [[(3R,4R,5S,6R)-3-acetamido-4,5-bis(oxidanyl)-6-(sulfooxymethyl)oxan-2-ylidene]amino] N-phenylcarbamate
著者Kashima, T, Yamada, C, Fushinobu, S, Katoh, T, Katayama, T.
登録日2021-12-22
公開日2022-12-28
最終更新日2023-06-14
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem.
Nat.Chem.Biol., 19, 2023
3CBF
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BU of 3cbf by Molmil
Crystal structure of LysN, alpha-aminoadipate aminotransferase, from Thermus thermophilus HB27
分子名称: (2S)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]hexanedioic acid, Alpha-aminodipate aminotransferase
著者Tomita, T, Miyazaki, T, Miyagawa, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
登録日2008-02-21
公開日2009-01-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Mechanism for multiple-substrates recognition of alpha-aminoadipate aminotransferase from Thermus thermophilus
Proteins, 2008

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