PDB Search results for query - Protein Data Bank Japan

PDB: 30 results

beta-propeller phytase in complex with phosphate and calcium ions
Descriptor:	3-PHYTASE, CALCIUM ION, PHOSPHATE ION
Authors:	Shin, S, Ha, N.C, Oh, B.H.
Deposit date:	2001-06-19
Release date:	2001-08-29
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Enzyme Mechanism and Catalytic Property of Beta Propeller Phytase Structure, 9, 2001

1GS3

High resolution crystal structure of PI delta-5-3-Ketosteroid Isomerase mutants Y30F/Y55F/Y115F/D38N (Y32F/Y57F/Y119F/D40N, PI numbering)complexed with equilenin at 2.1 A resolution
Descriptor:	EQUILENIN, STEROID DELTA-ISOMERASE
Authors:	Shin, S, Ha, N.-C, Oh, B.-H.
Deposit date:	2001-12-27
Release date:	2003-01-23
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Contribution of a Low-Barrier Hydrogen Bond to Catalysis by Delta-5-3-Ketosteroid Isomerase is not Extremely High Compared to that of an Ordinary Hydrogen Bond. Low-Barrier Hydrogen Bond of Pi Ksi To be Published

1CVM

CADMIUM INHIBITED CRYSTAL STRUCTURE OF PHYTASE FROM BACILLUS AMYLOLIQUEFACIENS
Descriptor:	CADMIUM ION, CALCIUM ION, PHYTASE
Authors:	Shin, S, Ha, N.-C, Oh, B.-H.
Deposit date:	1999-08-24
Release date:	2000-02-24
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Crystal structures of a novel, thermostable phytase in partially and fully calcium-loaded states. Nat.Struct.Biol., 7, 2000

1O9N

Crystal structure of the K62A mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2002-12-18
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OBI

Crystal structure of the G130A mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-01-31
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1O9O

Crystal structure of the S131A mutant of Malonamidase E2 complexed with malonamate from Bradyrhizobium japonicum
Descriptor:	3-AMINO-3-OXOPROPANOIC ACID, MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2002-12-18
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1O9P

Crystal structure of the S131A mutant of Malonamidase E2 complexed with malonate from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2, MALONIC ACID
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2002-12-18
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OCL

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COMPLEXED WITH MALONATE FROM BRADYRHIZOBIUM JAPONICUM
Descriptor:	MALONAMIDASE E2, MALONIC ACID
Authors:	Shin, S, Ha, N.-C, Lee, T.-H, Oh, B.-H.
Deposit date:	2003-02-08
Release date:	2003-02-25
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1OBL

crystal structure of the S133A mutant of Malonamidase E2 complexed with malonate from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2, MALONIC ACID
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-01-31
Release date:	2004-02-13
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1O9Q

Crystal structure of the S155C mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2002-12-18
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OCK

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Ha, N.-C, Lee, T.-H, Oh, B.-H.
Deposit date:	2003-02-08
Release date:	2003-03-03
Last modified:	2024-05-08
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1OCH

Crystal structure of the S155C mutant of malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-02-07
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OBJ

Crystal structure of the T150A mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-01-31
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OBK

crystal structure of the R158Q mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-01-31
Release date:	2004-02-13
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1OCM

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COVALENTLY COMPLEXED WITH PYROPHOSPHATE FROM BRADYRHIZOBIUM JAPONICUM
Descriptor:	MALONAMIDASE E2, PYROPHOSPHATE 2-
Authors:	Shin, S, Ha, N.-C, Lee, T.-H, Oh, B.-H.
Deposit date:	2003-02-08
Release date:	2003-02-25
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1QLG

Crystal structure of phytase with magnesium from Bacillus amyloliquefaciens
Descriptor:	3-PHYTASE, CALCIUM ION, MAGNESIUM ION
Authors:	Shin, S, Ha, N.-C, Oh, B.-H.
Deposit date:	1999-08-31
Release date:	2000-02-03
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Crystal Structures of a Novel, Thermostable Phytase in Partially and Fully Calcium-Loaded States Nat.Struct.Biol., 7, 2000

8HAM

Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 2
Descriptor:	CREB-binding protein, DNA (180-mer), Histone H2A type 1-B/E, ...
Authors:	Kikuchi, M, Morita, S, Wakamori, M, Shin, S, Uchikubo-Kamo, T, Shirouzu, M, Umehara, T.
Deposit date:	2022-10-26
Release date:	2023-05-17
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (4.5 Å)
Cite:	Epigenetic mechanisms to propagate histone acetylation by p300/CBP. Nat Commun, 14, 2023

8HAK

Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 4 (4.5 angstrom resolution)
Descriptor:	DNA (180-mer), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:	Kikuchi, M, Morita, S, Wakamori, M, Shin, S, Uchikubo-Kamo, T, Shirouzu, M, Umehara, T.
Deposit date:	2022-10-26
Release date:	2023-05-17
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (4.5 Å)
Cite:	Epigenetic mechanisms to propagate histone acetylation by p300/CBP. Nat Commun, 14, 2023

8HAI

Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (4.7 angstrom resolution)
Descriptor:	DNA (180-mer), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:	Kikuchi, M, Morita, S, Wakamori, M, Shin, S, Uchikubo-Kamo, T, Shirouzu, M, Umehara, T.
Deposit date:	2022-10-26
Release date:	2023-05-17
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (4.7 Å)
Cite:	Epigenetic mechanisms to propagate histone acetylation by p300/CBP. Nat Commun, 14, 2023

8HAJ

Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (4.8 angstrom resolution)
Descriptor:	DNA (180-mer), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:	Kikuchi, M, Morita, S, Wakamori, M, Shin, S, Uchikubo-Kamo, T, Shirouzu, M, Umehara, T.
Deposit date:	2022-10-26
Release date:	2023-05-17
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (4.8 Å)
Cite:	Epigenetic mechanisms to propagate histone acetylation by p300/CBP. Nat Commun, 14, 2023

8HAG

Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (3.2 angstrom resolution)
Descriptor:	DNA (180-mer), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:	Kikuchi, M, Morita, S, Wakamori, M, Shin, S, Uchikubo-Kamo, T, Shirouzu, M, Umehara, T.
Deposit date:	2022-10-26
Release date:	2023-05-17
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	Epigenetic mechanisms to propagate histone acetylation by p300/CBP. Nat Commun, 14, 2023

8HAL

Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1
Descriptor:	CREB-binding protein, DNA (180-mer), Histone H2A type 1-B/E, ...
Authors:	Kikuchi, M, Morita, S, Wakamori, M, Shin, S, Uchikubo-Kamo, T, Shirouzu, M, Umehara, T.
Deposit date:	2022-10-26
Release date:	2023-05-17
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (4.4 Å)
Cite:	Epigenetic mechanisms to propagate histone acetylation by p300/CBP. Nat Commun, 14, 2023

8HAN

Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 3
Descriptor:	CREB-binding protein, DNA (180-mer), Histone H2A type 1-B/E, ...
Authors:	Kikuchi, M, Morita, S, Wakamori, M, Shin, S, Uchikubo-Kamo, T, Shirouzu, M, Umehara, T.
Deposit date:	2022-10-26
Release date:	2023-05-17
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (4.2 Å)
Cite:	Epigenetic mechanisms to propagate histone acetylation by p300/CBP. Nat Commun, 14, 2023

8HAH

Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (3.9 angstrom resolution)
Descriptor:	DNA (180-mer), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:	Kikuchi, M, Morita, S, Wakamori, M, Shin, S, Uchikubo-Kamo, T, Shirouzu, M, Umehara, T.
Deposit date:	2022-10-26
Release date:	2023-05-17
Last modified:	2023-07-26
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	Epigenetic mechanisms to propagate histone acetylation by p300/CBP. Nat Commun, 14, 2023

5Z8T

Flavin-containing monooxygenase
Descriptor:	Acyl-CoA dehydrogenase type 2 domain protein, FLAVIN-ADENINE DINUCLEOTIDE
Authors:	Choe, J, Moon, H, Shin, S.
Deposit date:	2018-02-01
Release date:	2019-02-06
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.33 Å)
Cite:	Crystal structure of putative Flavin-dependent monooxgenase To Be Published

12 >

Total results:	30
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Shin, S."