PDB Search results for query - Protein Data Bank Japan

PDB: 375 results

beta-propeller phytase in complex with phosphate and calcium ions
Descriptor:	3-PHYTASE, CALCIUM ION, PHOSPHATE ION
Authors:	Shin, S, Ha, N.C, Oh, B.H.
Deposit date:	2001-06-19
Release date:	2001-08-29
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Enzyme Mechanism and Catalytic Property of Beta Propeller Phytase Structure, 9, 2001

1GS3

High resolution crystal structure of PI delta-5-3-Ketosteroid Isomerase mutants Y30F/Y55F/Y115F/D38N (Y32F/Y57F/Y119F/D40N, PI numbering)complexed with equilenin at 2.1 A resolution
Descriptor:	EQUILENIN, STEROID DELTA-ISOMERASE
Authors:	Shin, S, Ha, N.-C, Oh, B.-H.
Deposit date:	2001-12-27
Release date:	2003-01-23
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Contribution of a Low-Barrier Hydrogen Bond to Catalysis by Delta-5-3-Ketosteroid Isomerase is not Extremely High Compared to that of an Ordinary Hydrogen Bond. Low-Barrier Hydrogen Bond of Pi Ksi To be Published

1CVM

CADMIUM INHIBITED CRYSTAL STRUCTURE OF PHYTASE FROM BACILLUS AMYLOLIQUEFACIENS
Descriptor:	CADMIUM ION, CALCIUM ION, PHYTASE
Authors:	Shin, S, Ha, N.-C, Oh, B.-H.
Deposit date:	1999-08-24
Release date:	2000-02-24
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Crystal structures of a novel, thermostable phytase in partially and fully calcium-loaded states. Nat.Struct.Biol., 7, 2000

1O9N

Crystal structure of the K62A mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2002-12-18
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OBK

crystal structure of the R158Q mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-01-31
Release date:	2004-02-13
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1OCM

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COVALENTLY COMPLEXED WITH PYROPHOSPHATE FROM BRADYRHIZOBIUM JAPONICUM
Descriptor:	MALONAMIDASE E2, PYROPHOSPHATE 2-
Authors:	Shin, S, Ha, N.-C, Lee, T.-H, Oh, B.-H.
Deposit date:	2003-02-08
Release date:	2003-02-25
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1OBI

Crystal structure of the G130A mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-01-31
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1O9O

Crystal structure of the S131A mutant of Malonamidase E2 complexed with malonamate from Bradyrhizobium japonicum
Descriptor:	3-AMINO-3-OXOPROPANOIC ACID, MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2002-12-18
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OBJ

Crystal structure of the T150A mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-01-31
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OCH

Crystal structure of the S155C mutant of malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-02-07
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1O9P

Crystal structure of the S131A mutant of Malonamidase E2 complexed with malonate from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2, MALONIC ACID
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2002-12-18
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OCL

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COMPLEXED WITH MALONATE FROM BRADYRHIZOBIUM JAPONICUM
Descriptor:	MALONAMIDASE E2, MALONIC ACID
Authors:	Shin, S, Ha, N.-C, Lee, T.-H, Oh, B.-H.
Deposit date:	2003-02-08
Release date:	2003-02-25
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1OBL

crystal structure of the S133A mutant of Malonamidase E2 complexed with malonate from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2, MALONIC ACID
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2003-01-31
Release date:	2004-02-13
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1O9Q

Crystal structure of the S155C mutant of Malonamidase E2 from Bradyrhizobium japonicum
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Oh, B.-H.
Deposit date:	2002-12-18
Release date:	2003-12-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad J.Biol.Chem., 278, 2003

1OCK

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM
Descriptor:	MALONAMIDASE E2
Authors:	Shin, S, Ha, N.-C, Lee, T.-H, Oh, B.-H.
Deposit date:	2003-02-08
Release date:	2003-03-03
Last modified:	2024-05-08
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem., 278, 2003

1QLG

Crystal structure of phytase with magnesium from Bacillus amyloliquefaciens
Descriptor:	3-PHYTASE, CALCIUM ION, MAGNESIUM ION
Authors:	Shin, S, Ha, N.-C, Oh, B.-H.
Deposit date:	1999-08-31
Release date:	2000-02-03
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Crystal Structures of a Novel, Thermostable Phytase in Partially and Fully Calcium-Loaded States Nat.Struct.Biol., 7, 2000

1UK6

Crystal structure of a meta-cleavage product hydrolase (CumD) complexed with propionate
Descriptor:	2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase, PROPANOIC ACID
Authors:	Fushinobu, S, Jun, S.-Y, Hidaka, M, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T.
Deposit date:	2003-08-19
Release date:	2004-09-14
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	A Series of Crystal Structures of a meta-Cleavage Product Hydrolase from Pseudomonas fluorescens IP01 (CumD) Complexed with Various Cleavage Products BIOSCI.BIOTECHNOL.BIOCHEM., 69, 2005

1UK8

Crystal structure of a meta-cleavage product hydrolase (CumD) complexed with n-valerate
Descriptor:	2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase, PENTANOIC ACID
Authors:	Fushinobu, S, Jun, S.-Y, Hidaka, M, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T.
Deposit date:	2003-08-19
Release date:	2004-09-14
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	A Series of Crystal Structures of a meta-Cleavage Product Hydrolase from Pseudomonas fluorescens IP01 (CumD) Complexed with Various Cleavage Products BIOSCI.BIOTECHNOL.BIOCHEM., 69, 2005

1UK7

Crystal structure of a meta-cleavage product hydrolase (CumD) complexed with n-butyrate
Descriptor:	2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase, butanoic acid
Authors:	Fushinobu, S, Jun, S.-Y, Hidaka, M, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T.
Deposit date:	2003-08-19
Release date:	2004-09-14
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	A Series of Crystal Structures of a meta-Cleavage Product Hydrolase from Pseudomonas fluorescens IP01 (CumD) Complexed with Various Cleavage Products BIOSCI.BIOTECHNOL.BIOCHEM., 69, 2005

1UKA

Crystal structure of a meta-cleavage product hydrolase (CumD) complexed with (S)-2-methylbutyrate
Descriptor:	2-METHYLBUTANOIC ACID, 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
Authors:	Fushinobu, S, Jun, S.-Y, Hidaka, M, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T.
Deposit date:	2003-08-19
Release date:	2004-09-14
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	A Series of Crystal Structures of a meta-Cleavage Product Hydrolase from Pseudomonas fluorescens IP01 (CumD) Complexed with Various Cleavage Products BIOSCI.BIOTECHNOL.BIOCHEM., 69, 2005

1UKB

Crystal structure of a meta-cleavage product hydrolase (CumD) complexed with benzoate
Descriptor:	2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase, BENZOIC ACID
Authors:	Fushinobu, S, Jun, S.-Y, Hidaka, M, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T.
Deposit date:	2003-08-19
Release date:	2004-09-14
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	A Series of Crystal Structures of a meta-Cleavage Product Hydrolase from Pseudomonas fluorescens IP01 (CumD) Complexed with Various Cleavage Products BIOSCI.BIOTECHNOL.BIOCHEM., 69, 2005

1UK9

Crystal structure of a meta-cleavage product hydrolase (CumD) complexed with isovalerate
Descriptor:	2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase, ISOVALERIC ACID
Authors:	Fushinobu, S, Jun, S.-Y, Hidaka, M, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T.
Deposit date:	2003-08-19
Release date:	2004-09-14
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	A Series of Crystal Structures of a meta-Cleavage Product Hydrolase from Pseudomonas fluorescens IP01 (CumD) Complexed with Various Cleavage Products BIOSCI.BIOTECHNOL.BIOCHEM., 69, 2005

2DEP

Crystal Structure of xylanase B from Clostridium stercorarium F9
Descriptor:	Thermostable celloxylanase
Authors:	Fushinobu, S, Nishimoto, M, Miyanaga, A, Kitaoka, M, Hayashi, K.
Deposit date:	2006-02-16
Release date:	2007-01-16
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Molecular anatomy of the alkaliphilic xylanase from Bacillus halodurans C-125 To be Published

2DRS

Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263S mutant
Descriptor:	GLYCEROL, NICKEL (II) ION, Xylanase Y
Authors:	Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:	2006-06-12
Release date:	2006-06-27
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Structural explanation for the acquisition of glycosynthase activity J.Biochem., 2009

2DRO

Crystal structure of reducing-end-xylose releasing exo-oligoxylanase D263C mutant
Descriptor:	GLYCEROL, NICKEL (II) ION, Xylanase Y
Authors:	Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
Deposit date:	2006-06-12
Release date:	2006-06-27
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Structural explanation for the acquisition of glycosynthase activity J.Biochem., 2009

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Total results:	375
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Shin, S."