8I4D
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![BU of 8i4d by Molmil](/molmil-images/mine/8i4d) | X-ray structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, L-Rha complex at 100K | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CALCIUM ION, ... | Authors: | Yano, N, Kondo, T, Kusaka, K, Yamada, T, Arakawa, T, Sakamoto, T, Fushinobu, S. | Deposit date: | 2023-01-19 | Release date: | 2024-01-24 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.06 Å) | Cite: | Charge neutralization and beta-elimination cleavage mechanism of family 42 L-rhamnose-alpha-1,4-D-glucuronate lyase revealed using neutron crystallography. J.Biol.Chem., 300, 2024
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4ZLF
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![BU of 4zlf by Molmil](/molmil-images/mine/4zlf) | Cellobionic acid phosphorylase - cellobionic acid complex | Descriptor: | 4-O-beta-D-glucopyranosyl-D-gluconic acid, CHLORIDE ION, GLYCEROL, ... | Authors: | Nam, Y.W, Arakawa, T, Fushinobu, S. | Deposit date: | 2015-05-01 | Release date: | 2015-06-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes. J.Biol.Chem., 290, 2015
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4ZLI
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![BU of 4zli by Molmil](/molmil-images/mine/4zli) | Cellobionic acid phosphorylase - 3-O-beta-D-glucopyranosyl-alpha-D-glucopyranuronic acid complex | Descriptor: | CHLORIDE ION, GLYCEROL, Putative b-glycan phosphorylase, ... | Authors: | Nam, Y.W, Arakawa, T, Fushinobu, S. | Deposit date: | 2015-05-01 | Release date: | 2015-06-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes. J.Biol.Chem., 290, 2015
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4ZLE
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![BU of 4zle by Molmil](/molmil-images/mine/4zle) | Cellobionic acid phosphorylase - ligand free structure | Descriptor: | CHLORIDE ION, GLYCEROL, Putative b-glycan phosphorylase, ... | Authors: | Nam, Y.W, Arakawa, T, Fushinobu, S. | Deposit date: | 2015-05-01 | Release date: | 2015-06-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes. J.Biol.Chem., 290, 2015
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5H40
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![BU of 5h40 by Molmil](/molmil-images/mine/5h40) | Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose | Descriptor: | CALCIUM ION, GLYCEROL, Uncharacterized protein, ... | Authors: | Nakajima, M, Tanaka, N, Furukawa, N, Nihira, T, Kodutsumi, Y, Takahashi, Y, Sugimoto, N, Miyanaga, A, Fushinobu, S, Taguchi, H, Nakai, H. | Deposit date: | 2016-10-28 | Release date: | 2017-03-01 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans Sci Rep, 7, 2017
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4EI7
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![BU of 4ei7 by Molmil](/molmil-images/mine/4ei7) | Crystal structure of Bacillus cereus TubZ, GDP-form | Descriptor: | GUANOSINE-5'-DIPHOSPHATE, Plasmid replication protein RepX | Authors: | Hayashi, I, Hoshino, S. | Deposit date: | 2012-04-05 | Release date: | 2012-08-15 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Filament formation of the FtsZ/tubulin-like protein TubZ from the Bacillus cereus pXO1 plasmid. J.Biol.Chem., 287, 2012
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3AO9
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![BU of 3ao9 by Molmil](/molmil-images/mine/3ao9) | Crystal structure of the C-terminal domain of sequence-specific ribonuclease | Descriptor: | CADMIUM ION, Colicin-E5 | Authors: | Inoue, S, Fushinobu, S, Ogawa, T, Hidaka, M, Masaki, H, Yajima, S. | Deposit date: | 2010-09-22 | Release date: | 2011-09-28 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5 J.Biochem., 152, 2012
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1IRE
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![BU of 1ire by Molmil](/molmil-images/mine/1ire) | Crystal Structure of Co-type nitrile hydratase from Pseudonocardia thermophila | Descriptor: | COBALT (II) ION, Nitrile Hydratase | Authors: | Miyanaga, A, Fushinobu, S, Ito, K, Wakagi, T. | Deposit date: | 2001-10-01 | Release date: | 2002-10-01 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of cobalt-containing nitrile hydratase. Biochem.Biophys.Res.Commun., 288, 2001
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2D0D
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![BU of 2d0d by Molmil](/molmil-images/mine/2d0d) | Crystal Structure of a Meta-cleavage Product Hydrolase (CumD) A129V Mutant | Descriptor: | 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase, CHLORIDE ION, PHOSPHATE ION | Authors: | Jun, S.Y, Fushinobu, S, Nojiri, H, Omori, T, Shoun, H, Wakagi, T. | Deposit date: | 2005-08-01 | Release date: | 2006-06-06 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01 Biochim.Biophys.Acta, 1764, 2006
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3E5J
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![BU of 3e5j by Molmil](/molmil-images/mine/3e5j) | Crystal structure of CYP105P1 wild-type ligand-free form | Descriptor: | Cytochrome P450 (Cytochrome P450 hydroxylase), PROTOPORPHYRIN IX CONTAINING FE | Authors: | Xu, L.H, Fushinobu, S, Ikeda, H, Wakagi, T, Shoun, H. | Deposit date: | 2008-08-14 | Release date: | 2008-12-30 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Crystal structures of cytochrome P450 105P1 from Streptomyces avermitilis: conformational flexibility and histidine ligation state J.Bacteriol., 191, 2009
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1WD3
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![BU of 1wd3 by Molmil](/molmil-images/mine/1wd3) | Crystal structure of arabinofuranosidase | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-L-arabinofuranosidase B | Authors: | Miyanaga, A, Koseki, T, Matsuzawa, H, Wakagi, T, Shoun, H, Fushinobu, S. | Deposit date: | 2004-05-11 | Release date: | 2004-09-14 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Crystal structure of a family 54 alpha-L-arabinofuranosidase reveals a novel carbohydrate-binding module that can bind arabinose J.Biol.Chem., 279, 2004
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1X0L
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![BU of 1x0l by Molmil](/molmil-images/mine/1x0l) | Crystal structure of tetrameric homoisocitrate dehydrogenase from an extreme thermophile, Thermus thermophilus | Descriptor: | Homoisocitrate dehydrogenase | Authors: | Miyazaki, J, Asada, K, Fushinobu, S, Kuzuyama, T, Nishiyama, M. | Deposit date: | 2005-03-24 | Release date: | 2005-10-04 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Crystal Structure of Tetrameric Homoisocitrate Dehydrogenase from an Extreme Thermophile, Thermus thermophilus: Involvement of Hydrophobic Dimer-Dimer Interaction in Extremely High Thermotolerance J.Bacteriol., 187, 2005
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1ITP
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![BU of 1itp by Molmil](/molmil-images/mine/1itp) | Solution Structure of POIA1 | Descriptor: | proteinase A inhibitor 1 | Authors: | Sasakawa, H, Yoshinaga, S, Kojima, S, Tamura, A. | Deposit date: | 2002-01-23 | Release date: | 2002-02-13 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Structure of POIA1, a homologous protein to the propeptide of subtilisin: implication for protein foldability and the function as an intramolecular chaperone. J.Mol.Biol., 317, 2002
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1WD4
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![BU of 1wd4 by Molmil](/molmil-images/mine/1wd4) | Crystal structure of arabinofuranosidase complexed with arabinose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-L-arabinofuranose, alpha-L-arabinofuranosidase B | Authors: | Miyanaga, A, Koseki, T, Matsuzawa, H, Wakagi, T, Shoun, H, Fushinobu, S. | Deposit date: | 2004-05-11 | Release date: | 2004-09-14 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.07 Å) | Cite: | Crystal structure of a family 54 alpha-L-arabinofuranosidase reveals a novel carbohydrate-binding module that can bind arabinose J.Biol.Chem., 279, 2004
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1WMH
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![BU of 1wmh by Molmil](/molmil-images/mine/1wmh) | Crystal structure of a PB1 domain complex of Protein kinase c iota and Par6 alpha | Descriptor: | Partitioning defective-6 homolog alpha, Protein kinase C, iota type | Authors: | Hirano, Y, Yoshinaga, S, Suzuki, N.N, Horiuchi, M, Kohjima, M, Takeya, R, Sumimoto, H, Inagaki, F. | Deposit date: | 2004-07-09 | Release date: | 2004-12-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structure of a Cell Polarity Regulator, a Complex between Atypical PKC and Par6 PB1 Domains J.Biol.Chem., 280, 2005
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1UGP
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![BU of 1ugp by Molmil](/molmil-images/mine/1ugp) | Crystal structure of Co-type nitrile hydratase complexed with n-butyric acid | Descriptor: | COBALT (II) ION, Cobalt-containing nitrile hydratase subunit alpha, Cobalt-containing nitrile hydratase subunit beta, ... | Authors: | Miyanaga, A, Fushinobu, S, Ito, K, Shoun, H, Wakagi, T. | Deposit date: | 2003-06-17 | Release date: | 2004-06-17 | Last modified: | 2022-12-21 | Method: | X-RAY DIFFRACTION (1.63 Å) | Cite: | Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding Eur.J.Biochem., 271, 2004
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5YHS
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![BU of 5yhs by Molmil](/molmil-images/mine/5yhs) | Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, apo form | Descriptor: | Pyruvylated beta-D-galactosidase | Authors: | Tanuma, M, Yamada, C, Arakawa, T, Higuchi, Y, Takegawa, K, Fushinobu, S. | Deposit date: | 2017-09-29 | Release date: | 2018-08-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose. Sci Rep, 8, 2018
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3VPG
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![BU of 3vpg by Molmil](/molmil-images/mine/3vpg) | L-lactate dehydrogenase from Thermus caldophilus GK24 | Descriptor: | GLYCEROL, L-lactate dehydrogenase | Authors: | Arai, K, Ohno, T, Miyanaga, A, Fushinobu, S, Taguchi, H. | Deposit date: | 2012-03-01 | Release date: | 2013-03-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The core of allosteric motion in Thermus caldophilus L-lactate dehydrogenase. J.Biol.Chem., 2014
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3ABA
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![BU of 3aba by Molmil](/molmil-images/mine/3aba) | Crystal structure of CYP105P1 in complex with filipin I | Descriptor: | (3R,4S,6S,8S,10R,12R,14R,16S,17E,19E,21E,23E,25E,28R)-3-hexyl-4,6,8,10,12,14,16-heptahydroxy-17,28-dimethyloxacyclooctacosa-17,19,21,23,25-pentaen-2-one, Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE, ... | Authors: | Xu, L.H, Fushinobu, S, Takamatsu, S, Wakagi, T, Ikeda, H, Shoun, H. | Deposit date: | 2009-12-04 | Release date: | 2010-04-07 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Regio- and stereospecificity of filipin hydroxylation sites revealed by crystal structures of cytochrome P450 105P1 and 105D6 from Streptomyces avermitilis J.Biol.Chem., 285, 2010
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5YIF
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![BU of 5yif by Molmil](/molmil-images/mine/5yif) | Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, E163A mutant pyruvylated beta-D-galactose complex | Descriptor: | (2R,4aR,6R,7R,8R,8aR)-2-methyl-6,7,8-tris(oxidanyl)-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxine-2-carboxylic acid, Pyruvylated beta-D-galactosidase | Authors: | Tanuma, M, Yamada, C, Arakawa, T, Higuchi, Y, Takegawa, K, Fushinobu, S. | Deposit date: | 2017-10-04 | Release date: | 2018-08-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose. Sci Rep, 8, 2018
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3ABB
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![BU of 3abb by Molmil](/molmil-images/mine/3abb) | Crystal structure of CYP105D6 | Descriptor: | Cytochrome P450 hydroxylase, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Xu, L.H, Fushinobu, S, Takamatsu, S, Wakagi, T, Ikeda, H, Shoun, H. | Deposit date: | 2009-12-04 | Release date: | 2010-04-07 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Regio- and stereospecificity of filipin hydroxylation sites revealed by crystal structures of cytochrome P450 105P1 and 105D6 from Streptomyces avermitilis J.Biol.Chem., 285, 2010
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3WH6
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![BU of 3wh6 by Molmil](/molmil-images/mine/3wh6) | Crystal structure of GH1 beta-glucosidase Td2F2 glucose complex | Descriptor: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SODIUM ION, alpha-D-glucopyranose, ... | Authors: | Jo, T, Fushinobu, S, Uchiyama, T, Yaoi, K. | Deposit date: | 2013-08-21 | Release date: | 2014-09-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2. Febs J., 283, 2016
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3WMT
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![BU of 3wmt by Molmil](/molmil-images/mine/3wmt) | Crystal structure of feruloyl esterase B from Aspergillus oryzae | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Probable feruloyl esterase B-1 | Authors: | Suzuki, K, Ishida, T, Igarashi, K, Koseki, T, Fushinobu, S. | Deposit date: | 2013-11-25 | Release date: | 2014-08-06 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal structure of a feruloyl esterase belonging to the tannase family: a disulfide bond near a catalytic triad. Proteins, 82, 2014
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3WH7
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![BU of 3wh7 by Molmil](/molmil-images/mine/3wh7) | Crystal structure of GH1 beta-glucosidase Td2F2 L-fucose complex | Descriptor: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SODIUM ION, beta-D-fucopyranose, ... | Authors: | Jo, T, Fushinobu, S, Uchiyama, T, Yaoi, K. | Deposit date: | 2013-08-21 | Release date: | 2014-09-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2. Febs J., 283, 2016
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1K1X
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![BU of 1k1x by Molmil](/molmil-images/mine/1k1x) | Crystal structure of 4-alpha-glucanotransferase from thermococcus litoralis | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-ALPHA-GLUCANOTRANSFERASE, CALCIUM ION | Authors: | Imamura, H, Fushinobu, S, Kumasaka, T, Yamamoto, M, Jeon, B.S, Wakagi, T, Matsuzawa, H. | Deposit date: | 2001-09-26 | Release date: | 2003-06-17 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structures of 4-alpha-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor J.BIOL.CHEM., 278, 2003
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