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PDB: 67 件
3D79
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Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3
分子名称: Putative uncharacterized protein PH0734
著者Nishimura, Y, Miyazono, K, Sawano, Y, Makino, T, Nagata, K, Tanokura, M.
登録日2008-05-20
公開日2008-12-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 73, 2008
1VFC
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Solution Structure Of The DNA Complex Of Human Trf2
分子名称: Short C-rich starnd, Short G-rich strand, Telomeric repeat binding factor 2
著者Nishimura, Y, Hanaoka, S.
登録日2004-04-12
公開日2005-05-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
1VF9
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Solution Structure Of Human Trf2
分子名称: Telomeric repeat binding factor 2
著者Nishimura, Y, Hanaoka, S.
登録日2004-04-12
公開日2005-05-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
2SXL
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SEX-LETHAL RBD1, NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: SEX-LETHAL PROTEIN
著者Inoue, M, Muto, Y, Sakamoto, H, Kigawa, T, Takio, K, Shimura, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1997-07-16
公開日1998-07-22
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献A characteristic arrangement of aromatic amino acid residues in the solution structure of the amino-terminal RNA-binding domain of Drosophila sex-lethal.
J.Mol.Biol., 272, 1997
1BVZ
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ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47
分子名称: PROTEIN (ALPHA-AMYLASE II)
著者Kamitori, S, Kondo, S, Okuyama, K, Yokota, T, Shimura, Y, Tonozuka, T, Sakano, Y.
登録日1998-09-22
公開日1999-03-02
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolution.
J.Mol.Biol., 287, 1999
1B7F
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SXL-LETHAL PROTEIN/RNA COMPLEX
分子名称: PROTEIN (SXL-LETHAL PROTEIN), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3')
著者Handa, N, Nureki, O, Kurimoto, K, Kim, I, Sakamoto, H, Shimura, Y, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-01-23
公開日1999-05-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein.
Nature, 398, 1999
1WZK
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Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt D465N
分子名称: Alpha-amylase II, CALCIUM ION
著者Mizuno, M, Ichikawa, K, Tonozuka, T, Ohtaki, A, Shimura, Y, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2005-03-06
公開日2005-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II)
To be Published
1WZL
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Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt R469L
分子名称: Alpha-amylase II, CALCIUM ION
著者Mizuno, M, Ichikawa, K, Tonozuka, T, Ohtaki, A, Shimura, Y, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2005-03-06
公開日2005-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II)
To be Published
1WZM
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Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt R469K
分子名称: Alpha-amylase II, CALCIUM ION
著者Mizuno, M, Ichikawa, K, Tonozuka, T, Ohtaki, A, Shimura, Y, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2005-03-06
公開日2005-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II)
To be Published
1JF6
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Crystal structure of thermoactinomyces vulgaris r-47 alpha-amylase mutant F286Y
分子名称: ALPHA AMYLASE II, CALCIUM ION
著者Ohtaki, A, Kondo, S, Shimura, Y, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2001-06-20
公開日2002-05-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs
CARBOHYDR.RES., 334, 2001
1JF5
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CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE 2 MUTANT F286A
分子名称: ALPHA AMYLASE II, CALCIUM ION
著者Ohtaki, A, Kondo, S, Shimura, Y, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2001-06-20
公開日2002-05-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs
CARBOHYDR.RES., 334, 2001
1JIB
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Complex of Alpha-amylase II (TVA II) from Thermoactinomyces vulgaris R-47 with Maltotetraose Based on a Crystal Soaked with Maltohexaose.
分子名称: NEOPULLULANASE, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Yokota, T, Tonozuka, T, Shimura, Y, Ichikawa, K, Kamitori, S, Sakano, Y.
登録日2001-07-02
公開日2001-07-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structures of Thermoactinomyces vulgaris R-47 alpha-amylase II complexed with substrate analogues.
Biosci.Biotechnol.Biochem., 65, 2001
1JL8
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Complex of alpha-amylase II (TVA II) from Thermoactinomyces vulgaris R-47 with beta-cyclodextrin based on a co-crystallization with methyl beta-cyclodextrin
分子名称: ALPHA-AMYLASE II, Cycloheptakis-(1-4)-(alpha-D-glucopyranose)
著者Yokota, T, Tonozuka, T, Shimura, Y, Ichikawa, K, Kamitori, S, Sakano, Y.
登録日2001-07-16
公開日2001-08-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structures of Thermoactinomyces vulgaris R-47 alpha-amylase II complexed with substrate analogues.
Biosci.Biotechnol.Biochem., 65, 2001
1MBJ
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBK
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBE
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBH
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
分子名称: C-MYB
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-09-15
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBG
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MSE
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SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
分子名称: C-Myb DNA-Binding Domain, DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3')
著者Ogata, K, Morikawa, S, Nakamura, H, Sekikawa, A, Inoue, T, Kanai, H, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-01-24
公開日1995-03-31
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.
Cell(Cambridge,Mass.), 79, 1994
8I53
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Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH
分子名称: General transcription and DNA repair factor IIH subunit tfb1
著者Okuda, M, Nishimura, Y.
登録日2023-01-23
公開日2023-11-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural polymorphism of the PH domain in TFIIH.
Biosci.Rep., 43, 2023
2RO0
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Solution structure of the knotted tudor domain of the yeast histone acetyltransferase, Esa1
分子名称: Histone acetyltransferase ESA1
著者Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y.
登録日2008-03-01
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
2RNZ
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Solution structure of the presumed chromodomain of the yeast histone acetyltransferase, Esa1
分子名称: Histone acetyltransferase ESA1
著者Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y.
登録日2008-03-01
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
2RNQ
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Solution structure of the C-terminal acidic domain of TFIIE alpha
分子名称: Transcription initiation factor IIE subunit alpha
著者Okuda, M, Nishimura, Y.
登録日2008-01-31
公開日2008-04-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
2RSO
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Solution structure of the chromodomain of Swi6
分子名称: Chromatin-associated protein swi6
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
2RVM
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Solution structure of the chromodomain of HP1alpha with the phosphorylated N-terminal tail
分子名称: Chromobox protein homolog 5
著者Kawaguchi, A, Nishimura, Y.
登録日2015-12-18
公開日2016-03-16
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016

 

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