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PDB: 1889 件

7F8D
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Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) G218Y mutant
分子名称: Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Shimozawa, Y, Himiyama, T, Nakamura, T, Nishiya, Y.
登録日2021-07-02
公開日2022-02-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Increasing loop flexibility affords low-temperature adaptation of a moderate thermophilic malate dehydrogenase from Geobacillus stearothermophilus.
Protein Eng.Des.Sel., 34, 2021
8GQ9
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BU of 8gq9 by Molmil
Crystal structure of lasso peptide epimerase MslH
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, GLYCEROL, ...
著者Nakashima, Y, Morita, H.
登録日2022-08-29
公開日2023-06-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of lasso peptide epimerase MslH reveals metal-dependent acid/base catalytic mechanism.
Nat Commun, 14, 2023
8GQA
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Crystal structure of lasso peptide epimerase MslH in complexed with precursor peptide analog MslAdeltaW21
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Poly-gamma-glutamate synthesis protein (Capsule biosynthesis protein), ...
著者Nakashima, Y, Morita, H.
登録日2022-08-29
公開日2023-06-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Structure of lasso peptide epimerase MslH reveals metal-dependent acid/base catalytic mechanism.
Nat Commun, 14, 2023
8GQB
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Crystal structure of lasso peptide epimerase MslH D11A mutant
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Nakashima, Y, Morita, H.
登録日2022-08-29
公開日2023-06-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Structure of lasso peptide epimerase MslH reveals metal-dependent acid/base catalytic mechanism.
Nat Commun, 14, 2023
1I56
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BU of 1i56 by Molmil
SOLUTION STRUCTURE OF CA2+-BOUND STATE OF CANINE MILK LYSOZYME
分子名称: LYSOZYME C
著者Kobashigawa, Y, Tsuda, S, Nitta, K.
登録日2001-02-25
公開日2002-02-27
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution structure of Ca2+-bound state of canine milk lysozyme
To be Published
1I9Z
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BU of 1i9z by Molmil
CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 5-PHOSPHATASE DOMAIN (IPP5C) OF SPSYNAPTOJANIN IN COMPLEX WITH INOSITOL (1,4)-BISPHOSPHATE AND CALCIUM ION
分子名称: CALCIUM ION, D-MYO-INOSITOL-1,4-BISPHOSPHATE, PHOSPHATIDYLINOSITOL PHOSPHATE PHOSPHATASE
著者Tsujishita, Y, Guo, S, Stolz, L, York, J.D, Hurley, J.H.
登録日2001-03-21
公開日2001-05-16
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase.
Cell(Cambridge,Mass.), 105, 2001
4GA5
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BU of 4ga5 by Molmil
Crystal structure of AMP phosphorylase C-terminal deletion mutant in the apo-form
分子名称: Putative thymidine phosphorylase
著者Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
登録日2012-07-25
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
7WLR
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BU of 7wlr by Molmil
Cryo-EM structure of the nucleosome containing Komagataella pastoris histones
分子名称: DNA (145-MER), Histone H2A, Histone H2B, ...
著者Fukushima, Y, Hatazawa, S, Hirai, S, Kujirai, T, Takizawa, Y, Kurumizaka, H.
登録日2022-01-13
公開日2022-07-13
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones.
J.Biochem., 172, 2022
4GPG
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BU of 4gpg by Molmil
X/N joint refinement of Achromobacter Lyticus Protease I free form at pD8.0
分子名称: Protease 1
著者Ohnishi, Y, Yamada, T, Kurihara, K, Tanaka, I, Sakiyama, F, Masaki, T, Niimura, N.
登録日2012-08-21
公開日2013-09-11
最終更新日2023-11-08
実験手法NEUTRON DIFFRACTION (1.895 Å), X-RAY DIFFRACTION
主引用文献Neutron and X-ray crystallographic analysis of Achromobacter protease I at pD 8.0: protonation states and hydration structure in the free-form.
Biochim.Biophys.Acta, 1834, 2013
8ITH
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BU of 8ith by Molmil
Crystal structure of lasso peptide epimerase MslH H295N
分子名称: CALCIUM ION, GLYCEROL, Poly-gamma-glutamate synthesis protein (Capsule biosynthesis protein)
著者Nakashima, Y, Hiroyuki, M.
登録日2023-03-22
公開日2023-06-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structure of lasso peptide epimerase MslH reveals metal-dependent acid/base catalytic mechanism.
Nat Commun, 14, 2023
8ITG
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Crystal structure of lasso peptide epimerase MslH in complexed with precursor peptide variant MslAW21G
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Poly-gamma-glutamate synthesis protein (Capsule biosynthesis protein), ...
著者Nakashima, Y, Hiroyuki, M.
登録日2023-03-22
公開日2023-06-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure of lasso peptide epimerase MslH reveals metal-dependent acid/base catalytic mechanism.
Nat Commun, 14, 2023
5HEE
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BU of 5hee by Molmil
Crystal structure of the TK2203 protein
分子名称: GLYCEROL, Putative uncharacterized protein, TK2203 protein, ...
著者Nishitani, Y, Miki, K.
登録日2016-01-06
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase
Acta Crystallogr.,Sect.F, 72, 2016
1I9Y
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BU of 1i9y by Molmil
CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 5-PHOSPHATASE DOMAIN (IPP5C) OF SPSYNAPTOJANIN
分子名称: PHOSPHATIDYLINOSITOL PHOSPHATE PHOSPHATASE
著者Tsujishita, Y, Guo, S, Stolz, L, York, J.D, Hurley, J.H.
登録日2001-03-21
公開日2001-05-16
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase.
Cell(Cambridge,Mass.), 105, 2001
1J35
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Crystal Structure of Ca(II)-bound Gla Domain of Factor IX Complexed with Binding Protein
分子名称: CALCIUM ION, Coagulation factor IX, Coagulation factor IX-binding protein B chain, ...
著者Shikamoto, Y, Morita, T, Fujimoto, Z, Mizuno, H.
登録日2003-01-20
公開日2003-07-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein
J.Biol.Chem., 278, 2003
4GA6
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BU of 4ga6 by Molmil
Crystal structure of AMP phosphorylase C-terminal deletion mutant in complex with substrates
分子名称: ADENOSINE MONOPHOSPHATE, Putative thymidine phosphorylase, SULFATE ION
著者Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
登録日2012-07-25
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
1J34
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BU of 1j34 by Molmil
Crystal Structure of Mg(II)-and Ca(II)-bound Gla Domain of Factor IX Complexed with Binding Protein
分子名称: CALCIUM ION, Coagulation factor IX, MAGNESIUM ION, ...
著者Shikamoto, Y, Morita, T, Fujimoto, Z, Mizuno, H.
登録日2003-01-20
公開日2003-07-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein
J.Biol.Chem., 278, 2003
4GA4
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BU of 4ga4 by Molmil
Crystal structure of AMP phosphorylase N-terminal deletion mutant
分子名称: PHOSPHATE ION, Putative thymidine phosphorylase
著者Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
登録日2012-07-25
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
6KV0
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BU of 6kv0 by Molmil
Ferredoxin I from C. reinhardtii, high X-ray dose
分子名称: BENZAMIDINE, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ...
著者Onishi, Y, Kurisu, G, Tanaka, H.
登録日2019-09-03
公開日2020-05-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii.
J.Biochem., 167, 2020
6KUM
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BU of 6kum by Molmil
Ferredoxin I from C. reinhardtii, low X-ray dose
分子名称: BENZAMIDINE, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ...
著者Onishi, Y, Kurisu, G, Tanaka, H.
登録日2019-09-02
公開日2020-05-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii.
J.Biochem., 167, 2020
6LK1
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BU of 6lk1 by Molmil
Ultrahigh resolution X-ray structure of Ferredoxin I from C. reinhardtii
分子名称: BENZAMIDINE, FE2/S2 (INORGANIC) CLUSTER, Ferredoxin, ...
著者Onishi, Y, Kurisu, G, Tanaka, H.
登録日2019-12-17
公開日2020-05-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii.
J.Biochem., 167, 2020
5XSW
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BU of 5xsw by Molmil
Crystal structure of an archaeal chitinase in the substrate-complex form (P63)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase, GLYCEROL, ...
著者Nishitani, Y, Miki, K.
登録日2017-06-15
公開日2018-05-02
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
5XSV
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BU of 5xsv by Molmil
Crystal structure of an archaeal chitinase in the ligand-free form
分子名称: COBALT (II) ION, Chitinase, SULFATE ION
著者Nishitani, Y, Miki, K.
登録日2017-06-15
公開日2018-05-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.723 Å)
主引用文献Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
5XSX
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BU of 5xsx by Molmil
Crystal structure of an archaeal chitinase in the substrate-complex form (P212121)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase, GLYCEROL, ...
著者Nishitani, Y, Miki, K.
登録日2017-06-15
公開日2018-05-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.642 Å)
主引用文献Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
2KFK
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BU of 2kfk by Molmil
Solution structure of Bem1p PB1 domain complexed with Cdc24p PB1 domain
分子名称: Bud emergence protein 1, Cell division control protein 24
著者Kobashigawa, Y, Yoshinaga, S, Tandai, T, Ogura, K, Inagaki, F.
登録日2009-02-23
公開日2009-10-06
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
7YBC
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BU of 7ybc by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with (S)-4-hydroxy-4-methyl-2-oxoglutarate and factor X-derived peptide (39mer-4Ser)
分子名称: (2~{S})-2-methyl-2-oxidanyl-4-oxidanylidene-pentanedioic acid, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
著者Nakashima, Y, Brewitz, L, Schofield, C.J.
登録日2022-06-29
公開日2023-07-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with (S)-4-hydroxy-4-methyl-2-oxoglutarate and factor X-derived peptide (39mer-4Ser)
To Be Published

221716

件を2024-06-26に公開中

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