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PDB: 1963 results

7Y3V
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BU of 7y3v by Molmil
Crystal structure of CdpNPT in complex with harmane
Descriptor: 1-methyl-9H-pyrido[3,4-b]indole, Cyclic dipeptide N-prenyltransferase, PHOSPHATE ION
Authors:Nakashima, Y, Morita, H.
Deposit date:2022-06-13
Release date:2023-04-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Catalytic potential of a fungal indole prenyltransferase toward beta-carbolines, harmine and harman, and their prenylation effects on antibacterial activity.
J.Biosci.Bioeng., 134, 2022
7XVJ
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BU of 7xvj by Molmil
Crystal structure of CdpNPT in complex with harmol
Descriptor: 1-methyl-9~{H}-pyrido[3,4-b]indol-7-ol, Cyclic dipeptide N-prenyltransferase, PHOSPHATE ION
Authors:Nakashima, Y, Morita, H.
Deposit date:2022-05-24
Release date:2023-04-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Enzymatic formation of a prenyl beta-carboline by a fungal indole prenyltransferase.
J Nat Med, 76, 2022
7BON
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BU of 7bon by Molmil
Crystal structure of recombinant horse spleen apo-R52C/E56C/R59C/E63C-Fr
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ...
Authors:Hishikawa, Y, Maity, B, Ito, N, Abe, S, Lu, D, Ueno, T.
Deposit date:2020-03-19
Release date:2021-01-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Design of Multinuclear Gold Binding Site at the Two-fold Symmetric Interface of the Ferritin Cage
Chem Lett., 49, 2021
6LB2
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BU of 6lb2 by Molmil
Crystal structure of rhesus macaque MHC class I molecule Mamu-B*098 complexed with mono-acyl glycerol
Descriptor: (2R)-2,3-dihydroxypropyl hexadecanoate, 1,2-ETHANEDIOL, Beta-2-microglobulin, ...
Authors:Shima, Y, Morita, D.
Deposit date:2019-11-13
Release date:2020-04-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.69380951 Å)
Cite:Crystal structures of lysophospholipid-bound MHC class I molecules.
J.Biol.Chem., 295, 2020
6LAH
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BU of 6lah by Molmil
Crystal structure of rhesus macaque MHC class I molecule Mamu-B*098 complexed with lysophosphatidylcholine
Descriptor: (2R)-2,3-dihydroxypropyl hexadecanoate, 1,2-ETHANEDIOL, Beta-2-microglobulin, ...
Authors:Shima, Y, Morita, D.
Deposit date:2019-11-12
Release date:2020-04-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structures of lysophospholipid-bound MHC class I molecules.
J.Biol.Chem., 295, 2020
6LAM
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BU of 6lam by Molmil
Crystal structure of rhesus macaque MHC class I molecule Mamu-B*098 complexed with lysophosphatidylethanolamine
Descriptor: (2R)-2,3-dihydroxypropyl hexadecanoate, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Shima, Y, Morita, D.
Deposit date:2019-11-12
Release date:2020-04-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of lysophospholipid-bound MHC class I molecules.
J.Biol.Chem., 295, 2020
2RSE
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BU of 2rse by Molmil
NMR structure of FKBP12-mTOR FRB domain-rapamycin complex structure determined based on PCS
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A, Serine/threonine-protein kinase mTOR, TERBIUM(III) ION
Authors:Kobashigawa, Y, Ushio, M, Saio, T, Inagaki, F.
Deposit date:2012-01-25
Release date:2012-05-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination.
J.Biomol.Nmr, 53, 2012
1QPK
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BU of 1qpk by Molmil
MUTANT (D193G) MALTOTETRAOSE-FORMING EXO-AMYLASE IN COMPLEX WITH MALTOTETRAOSE
Descriptor: CALCIUM ION, PROTEIN (MALTOTETRAOSE-FORMING AMYLASE), alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Yoshioka, Y, Hasegawa, K, Matsuura, Y, Katsube, Y, Kubota, M.
Deposit date:1999-05-26
Release date:1999-11-17
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Roles of catalytic residues in alpha-amylases as evidenced by the structures of the product-complexed mutants of a maltotetraose-forming amylase.
Protein Eng., 12, 1999
6KV0
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BU of 6kv0 by Molmil
Ferredoxin I from C. reinhardtii, high X-ray dose
Descriptor: BENZAMIDINE, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Onishi, Y, Kurisu, G, Tanaka, H.
Deposit date:2019-09-03
Release date:2020-05-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii.
J.Biochem., 167, 2020
6KUM
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BU of 6kum by Molmil
Ferredoxin I from C. reinhardtii, low X-ray dose
Descriptor: BENZAMIDINE, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Onishi, Y, Kurisu, G, Tanaka, H.
Deposit date:2019-09-02
Release date:2020-05-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii.
J.Biochem., 167, 2020
6LK1
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BU of 6lk1 by Molmil
Ultrahigh resolution X-ray structure of Ferredoxin I from C. reinhardtii
Descriptor: BENZAMIDINE, FE2/S2 (INORGANIC) CLUSTER, Ferredoxin, ...
Authors:Onishi, Y, Kurisu, G, Tanaka, H.
Deposit date:2019-12-17
Release date:2020-05-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii.
J.Biochem., 167, 2020
5XSV
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BU of 5xsv by Molmil
Crystal structure of an archaeal chitinase in the ligand-free form
Descriptor: COBALT (II) ION, Chitinase, SULFATE ION
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.723 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
6LT6
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BU of 6lt6 by Molmil
Crystal structure of rhesus macaque MHC class I molecule Mamu-B*05104 complexed with lysophosphatidylcholine
Descriptor: (2R)-2,3-dihydroxypropyl hexadecanoate, 1,2-ETHANEDIOL, Beta-2-microglobulin, ...
Authors:Shima, Y, Morita, D.
Deposit date:2020-01-21
Release date:2020-04-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of lysophospholipid-bound MHC class I molecules.
J.Biol.Chem., 295, 2020
8J6V
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BU of 8j6v by Molmil
Structure of yeast Arginyl-tRNA-protein transferase 1
Descriptor: arginyltransferase
Authors:Yashiro, Y, Tomita, K.
Deposit date:2023-04-26
Release date:2023-06-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of Arginyl-tRNA-protein transferase 1
To Be Published
7CHD
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BU of 7chd by Molmil
AtaT complexed with acetyl-methionyl-tRNAfMet
Descriptor: N-acetyltransferase domain-containing protein, RNA (77-MER)
Authors:Yashiro, Y, Tomita, K.
Deposit date:2020-07-05
Release date:2020-11-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.804 Å)
Cite:Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli.
Nat Commun, 11, 2020
7VM1
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BU of 7vm1 by Molmil
Crystal Structure of HasAp Capturing Iron Tetra(4-pyridyl)porphyrin
Descriptor: Fe-Tetra(4-pyridyl)porphyrin, GLYCEROL, Heme acquisition protein HasAp
Authors:Shisaka, Y, Ueda, G, Sakakibara, E, Sugimoto, H, Shoji, O.
Deposit date:2021-10-06
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
6LN3
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BU of 6ln3 by Molmil
Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Shibanuma, Y, Nemoto, N, Yamamoto, N, Sampei, G, Kawai, G.
Deposit date:2019-12-28
Release date:2020-04-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP.
J.Biochem., 168, 2020
5HEE
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BU of 5hee by Molmil
Crystal structure of the TK2203 protein
Descriptor: GLYCEROL, Putative uncharacterized protein, TK2203 protein, ...
Authors:Nishitani, Y, Miki, K.
Deposit date:2016-01-06
Release date:2016-06-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase
Acta Crystallogr.,Sect.F, 72, 2016
7F36
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BU of 7f36 by Molmil
TacT complexed with acetyl-glycyl-tRNAGly
Descriptor: ACETYLAMINO-ACETIC ACID, CALCIUM ION, N-acetyltransferase domain-containing protein, ...
Authors:Yashiro, Y, Tomita, K.
Deposit date:2021-06-15
Release date:2021-12-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.098 Å)
Cite:Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium
Cell Rep, 37, 2021
1JDC
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BU of 1jdc by Molmil
MUTANT (E219Q) MALTOTETRAOSE-FORMING EXO-AMYLASE COCRYSTALLIZED WITH MALTOTETRAOSE (CRYSTAL TYPE 1)
Descriptor: 1,4-ALPHA MALTOTETRAHYDROLASE, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Yoshioka, Y, Hasegawa, K, Matsuura, Y, Katsube, Y, Kubota, M.
Deposit date:1997-06-16
Release date:1997-10-15
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of a mutant maltotetraose-forming exo-amylase cocrystallized with maltopentaose.
J.Mol.Biol., 271, 1997
1JDD
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BU of 1jdd by Molmil
MUTANT (E219Q) MALTOTETRAOSE-FORMING EXO-AMYLASE COCRYSTALLIZED WITH MALTOTETRAOSE (CRYSTAL TYPE 2)
Descriptor: 1,4-ALPHA MALTOTETRAHYDROLASE, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Yoshioka, Y, Hasegawa, K, Matsuura, Y, Katsube, Y, Kubota, M.
Deposit date:1997-06-16
Release date:1997-10-15
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of a mutant maltotetraose-forming exo-amylase cocrystallized with maltopentaose.
J.Mol.Biol., 271, 1997
7BMI
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BU of 7bmi by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese, 3-fluoropyridine-2,4-dicarboxylic acid, and factor X substrate peptide fragment (39mer-4Ser)
Descriptor: 3-fluoranylpyridine-2,4-dicarboxylic acid, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
Authors:Nakashima, Y, Brewitz, L, Schofield, C.J.
Deposit date:2021-01-20
Release date:2021-06-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Fluorinated derivatives of pyridine-2,4-dicarboxylate are potent inhibitors of human 2-oxoglutarate dependent oxygenases
J Fluor Chem, 247, 2021
7E6J
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BU of 7e6j by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH) H725A in complex with Factor X peptide fragment (39mer-4Ser)
Descriptor: Aspartyl/asparaginyl beta-hydroxylase, GLYCEROL, PROPANOIC ACID, ...
Authors:Nakashima, Y, Brasnett, A, Brewitz, L, Schofield, C.J.
Deposit date:2021-02-22
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Human Oxygenase Variants Employing a Single Protein Fe II Ligand Are Catalytically Active.
Angew.Chem.Int.Ed.Engl., 60, 2021
5XSW
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BU of 5xsw by Molmil
Crystal structure of an archaeal chitinase in the substrate-complex form (P63)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase, GLYCEROL, ...
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
7DYV
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BU of 7dyv by Molmil
Human JMJD5 in complex with MN and 5-(benzylamino)pyridine-2,4-dicarboxylic acid.
Descriptor: 5-(benzylamino)pyridine-2,4-dicarboxylic acid, Bifunctional peptidase and arginyl-hydroxylase JMJD5, MANGANESE (II) ION
Authors:Nakashima, Y, Brewitz, L, Schofield, C.J.
Deposit date:2021-01-23
Release date:2022-02-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:5-Substituted Pyridine-2,4-dicarboxylate Derivatives Have Potential for Selective Inhibition of Human Jumonji-C Domain-Containing Protein 5.
J.Med.Chem., 66, 2023

221716

数据于2024-06-26公开中

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