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PDB: 2085 results
6AIS
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BU of 6ais by Molmil
Loop deletion mutant (deleting two residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-08-24
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6JP9
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BU of 6jp9 by Molmil
Crsytal structure of a XMP complexed ATPPase subunit of M. jannaschii GMP synthetase
Descriptor: GMP synthase [glutamine-hydrolyzing] subunit B, MALONIC ACID, TRIETHYLENE GLYCOL, ...
Authors:Shivakumarasamy, S, Balaram, H.
Deposit date:2019-03-26
Release date:2020-04-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mechanistic Insights into the Functioning of a Two-Subunit GMP Synthetase, an Allosterically Regulated, Ammonia Channeling Enzyme.
Biochemistry, 61, 2022
2RSV
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BU of 2rsv by Molmil
Solution structure of human full-length vaccinia related kinase 1 (VRK1)
Descriptor: Serine/threonine-protein kinase VRK1
Authors:Koshiba, S, Tochio, N, Yokoyama, J, Kigawa, T.
Deposit date:2012-07-12
Release date:2013-12-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A strategy for structure determination of large molecular weight protein using isotope labeling methodology with cell-free protein systhesis: application to 45 kDa human vaccinia related kianse 1 (VRK1)
To be Published
6IEI
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BU of 6iei by Molmil
Loop deletion and proline insertion mutant (deleting six residues and inserted five proline residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-09-14
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6ICS
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BU of 6ics by Molmil
Loop deletion mutant (deleting four residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-09-06
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6IDC
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BU of 6idc by Molmil
Loop deletion and proline insertion mutant (deleting six residues and inserted six proline residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-09-09
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
8HVB
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BU of 8hvb by Molmil
Crystal structure of lacto-N-biosidase StrLNBase from Streptomyces sp. strain 142, lacto-N-biose complex
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Lacto-N-biosidase, beta-D-galactopyranose
Authors:Fushinobu, S, Yamada, C, Fujio, N.
Deposit date:2022-12-26
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of glycoside hydrolase family 20 lacto-N-biosidase from soil bacterium Streptomyces sp. strain 142
to be published
8HVC
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BU of 8hvc by Molmil
Crystal structure of lacto-N-biosidase StrLNBase from Streptomyces sp. strain 142, galacto-N-biose complex 1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose
Authors:Fushinobu, S, Yamada, C, Fujio, N.
Deposit date:2022-12-26
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of glycoside hydrolase family 20 lacto-N-biosidase from soil bacterium Streptomyces sp. strain 142
to be published
8HVD
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BU of 8hvd by Molmil
Crystal structure of lacto-N-biosidase StrLNBase from Streptomyces sp. strain 142, galacto-N-biose complex 2
Descriptor: Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose
Authors:Fushinobu, S, Yamada, C, Fujio, N.
Deposit date:2022-12-26
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of glycoside hydrolase family 20 lacto-N-biosidase from soil bacterium Streptomyces sp. strain 142
to be published
8IE2
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BU of 8ie2 by Molmil
Crystal structure of Lactiplantibacillus plantarum GlyRS
Descriptor: Glycine--tRNA ligase alpha subunit, Glycine--tRNA ligase beta subunit
Authors:Yamashita, S, Tomita, K.
Deposit date:2023-02-15
Release date:2023-06-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Mechanism of tRNA recognition by heterotetrameric glycyl-tRNA synthetase from lactic acid bacteria.
J.Biochem., 174, 2023
8IDF
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BU of 8idf by Molmil
Crystal structure of human TUT1 complexed with U6 snRNA
Descriptor: RNA (53-MER), Speckle targeted PIP5K1A-regulated poly(A) polymerase, ZINC ION
Authors:Yamashita, S, Tomita, K.
Deposit date:2023-02-13
Release date:2023-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Mechanism of U6 snRNA oligouridylation by human TUT1.
Nat Commun, 14, 2023
5HC9
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BU of 5hc9 by Molmil
Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA
Descriptor: MAGNESIUM ION, tRNA nucleotidyl transferase-related protein, tRNAphe
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-01-04
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism of 3'-Matured tRNA Discrimination from 3'-Immature tRNA by Class-II CCA-Adding Enzyme
Structure, 24, 2016
5Y0S
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BU of 5y0s by Molmil
Crystal structure of apo Thermotoga maritima TmcAL(Form II)
Descriptor: 1,2-ETHANEDIOL, Thermotoga maritima TmcAL
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0P
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BU of 5y0p by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with alpha-thio ATP
Descriptor: ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, UPF0348 protein B4417_3650
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0R
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BU of 5y0r by Molmil
Crystal structure of Thermotoga maritima TmcAL (apo, form I)
Descriptor: TmTmcAL(SeMet)
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2018-12-26
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0N
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BU of 5y0n by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with ATP (SeMet derivative)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, UPF0348 protein B4417_3650
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2018-12-26
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0Q
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BU of 5y0q by Molmil
Crystal structure of BsTmcAL bound with AMPCPP
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, UPF0348 protein B4417_3650
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0O
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BU of 5y0o by Molmil
Crystal structure of apo BsTmcAL
Descriptor: UPF0348 protein B4417_3650
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0T
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BU of 5y0t by Molmil
Crystal structure of Thermotoga maritima TmcAL bound with alpha-thio ATP(Form II)
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, PENTAETHYLENE GLYCOL, ...
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
6K3I
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BU of 6k3i by Molmil
Salmonella hook in curved state - 66 subunit models
Descriptor: Flagellar hook protein FlgE
Authors:Shibata, S, Matsunami, H, Wolf, M, Aizawa, S.
Deposit date:2019-05-19
Release date:2019-10-02
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Torque transmission mechanism of the curved bacterial flagellar hook revealed by cryo-EM.
Nat.Struct.Mol.Biol., 26, 2019
5WU3
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BU of 5wu3 by Molmil
Crystal structure of human Tut1 bound with MgUTP, form II
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-12-16
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU5
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BU of 5wu5 by Molmil
Crystal structure of apo human Tut1, form III
Descriptor: Speckle targeted PIP5K1A-regulated poly(A) polymerase
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-12-16
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.404 Å)
Cite:Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU2
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BU of 5wu2 by Molmil
Crystal structure of human Tut1 bound with BaUTP, form I
Descriptor: BARIUM ION, CHLORIDE ION, Speckle targeted PIP5K1A-regulated poly(A) polymerase, ...
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-12-16
Release date:2017-05-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU4
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BU of 5wu4 by Molmil
Crystal structure of human Tut1 bound with MgATP, form II
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yamashita, S, Tomita, K.
Deposit date:2016-12-16
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
7FDD
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BU of 7fdd by Molmil
A Crystal structure of OspA mutant
Descriptor: DI(HYDROXYETHYL)ETHER, Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2021-07-16
Release date:2022-07-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:beta-Strand-mediated Domain-swapping in the Absence of Hydrophobic Core Repacking.
J.Mol.Biol., 436, 2024

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PDB entries from 2024-07-31

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