5WU5
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![BU of 5wu5 by Molmil](/molmil-images/mine/5wu5) | Crystal structure of apo human Tut1, form III | Descriptor: | Speckle targeted PIP5K1A-regulated poly(A) polymerase | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2016-12-16 | Release date: | 2017-05-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.404 Å) | Cite: | Crystal structures of U6 snRNA-specific terminal uridylyltransferase Nat Commun, 8, 2017
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5Y0O
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![BU of 5y0o by Molmil](/molmil-images/mine/5y0o) | Crystal structure of apo BsTmcAL | Descriptor: | UPF0348 protein B4417_3650 | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2017-07-18 | Release date: | 2018-07-18 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol., 14, 2018
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5Y0T
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![BU of 5y0t by Molmil](/molmil-images/mine/5y0t) | |
5WU2
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![BU of 5wu2 by Molmil](/molmil-images/mine/5wu2) | |
5WU6
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![BU of 5wu6 by Molmil](/molmil-images/mine/5wu6) | Crystal structure of apo human Tut1, form IV | Descriptor: | MAGNESIUM ION, Speckle targeted PIP5K1A-regulated poly(A) polymerase | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2016-12-16 | Release date: | 2017-05-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.209 Å) | Cite: | Crystal structures of U6 snRNA-specific terminal uridylyltransferase Nat Commun, 8, 2017
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3K8U
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![BU of 3k8u by Molmil](/molmil-images/mine/3k8u) | Crystal Structure of the Peptidase Domain of Streptococcus ComA, a Bi-functional ABC Transporter Involved in Quorum Sensing Pathway | Descriptor: | Putative ABC transporter, ATP-binding protein ComA | Authors: | Ishii, S, Yano, T, Ebihara, A, Okamoto, A, Manzoku, M, Hayashi, H. | Deposit date: | 2009-10-14 | Release date: | 2010-02-23 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of the peptidase domain of Streptococcus ComA, a bifunctional ATP-binding cassette transporter involved in the quorum-sensing pathway J.Biol.Chem., 285, 2010
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5WU4
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![BU of 5wu4 by Molmil](/molmil-images/mine/5wu4) | |
5WU3
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![BU of 5wu3 by Molmil](/molmil-images/mine/5wu3) | Crystal structure of human Tut1 bound with MgUTP, form II | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ... | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2016-12-16 | Release date: | 2017-05-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.703 Å) | Cite: | Crystal structures of U6 snRNA-specific terminal uridylyltransferase Nat Commun, 8, 2017
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5WU1
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![BU of 5wu1 by Molmil](/molmil-images/mine/5wu1) | Crystal structure of apo human Tut1, form I | Descriptor: | CHLORIDE ION, Speckle targeted PIP5K1A-regulated poly(A) polymerase | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2016-12-16 | Release date: | 2017-05-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structures of U6 snRNA-specific terminal uridylyltransferase Nat Commun, 8, 2017
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8GUJ
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![BU of 8guj by Molmil](/molmil-images/mine/8guj) | Bre1-nucleosome complex (Model II) | Descriptor: | DNA (147-mer), E3 ubiquitin-protein ligase BRE1A, E3 ubiquitin-protein ligase BRE1B, ... | Authors: | Onishi, S, Sato, K, Hamada, K, Nishizawa, T, Nureki, O, Ogata, K, Sengoku, T. | Deposit date: | 2022-09-12 | Release date: | 2023-09-20 | Last modified: | 2024-04-03 | Method: | ELECTRON MICROSCOPY (2.8 Å) | Cite: | Structure of the human Bre1 complex bound to the nucleosome. Nat Commun, 15, 2024
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8GUK
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![BU of 8guk by Molmil](/molmil-images/mine/8guk) | Human nucleosome core particle (free form) | Descriptor: | DNA (147-mer), Histone H2A type 1, Histone H2B type 1-J, ... | Authors: | Onishi, S, Sato, K, Nishizawa, T, Nureki, O, Ogata, K, Sengoku, T. | Deposit date: | 2022-09-12 | Release date: | 2023-09-20 | Last modified: | 2024-04-03 | Method: | ELECTRON MICROSCOPY (2.51 Å) | Cite: | Structure of the human Bre1 complex bound to the nucleosome. Nat Commun, 15, 2024
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8GUI
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![BU of 8gui by Molmil](/molmil-images/mine/8gui) | Bre1-nucleosome complex (Model I) | Descriptor: | DNA (147-mer), E3 ubiquitin-protein ligase BRE1A, E3 ubiquitin-protein ligase BRE1B, ... | Authors: | Onishi, S, Hamada, K, Sato, K, Nishizawa, T, Nureki, O, Ogata, K, Sengoku, T. | Deposit date: | 2022-09-12 | Release date: | 2023-09-20 | Last modified: | 2024-04-03 | Method: | ELECTRON MICROSCOPY (2.81 Å) | Cite: | Structure of the human Bre1 complex bound to the nucleosome. Nat Commun, 15, 2024
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3QFZ
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![BU of 3qfz by Molmil](/molmil-images/mine/3qfz) | Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Sulfate and 1-Deoxynojirimycin | Descriptor: | 1-DEOXYNOJIRIMYCIN, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Cellobiose Phosphorylase, ... | Authors: | Fushinobu, S, Hidaka, M, Hayashi, A.M, Wakagi, T, Shoun, H, Kitaoka, M. | Deposit date: | 2011-01-24 | Release date: | 2011-09-21 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.39 Å) | Cite: | Interactions between glycoside hydrolase family 94 cellobiose phosphorylase and glucosidase inhibitors J.Appl.Glyosci., 58, 2011
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4X0A
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![BU of 4x0a by Molmil](/molmil-images/mine/4x0a) | Structure of tRNA-processing enzyme complex 6 | Descriptor: | Poly A polymerase, RNA (73-MER) | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-11-21 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.505 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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4X0B
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![BU of 4x0b by Molmil](/molmil-images/mine/4x0b) | Structure of tRNA-processing enzyme complex 7 | Descriptor: | Poly A polymerase, RNA (77-MER) | Authors: | Yamashita, S, Tomita, K. | Deposit date: | 2014-11-21 | Release date: | 2015-04-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
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3R1M
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![BU of 3r1m by Molmil](/molmil-images/mine/3r1m) | Structure of bifunctional fructose 1,6-bisphosphate aldolase/phosphatase (aldolase form) | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 1,3-DIHYDROXYACETONEPHOSPHATE, MAGNESIUM ION, ... | Authors: | Fushinobu, S, Nishimasu, H, Hattori, D, Song, H.-J, Wakagi, T. | Deposit date: | 2011-03-10 | Release date: | 2011-10-12 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structural basis for the bifunctionality of fructose-1,6-bisphosphate aldolase/phosphatase. Nature, 478, 2011
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3QFY
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![BU of 3qfy by Molmil](/molmil-images/mine/3qfy) | Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Sulfate and Isofagomine | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, Cellobiose Phosphorylase, ... | Authors: | Fushinobu, S, Hidaka, M, Hayashi, A.M, Wakagi, T, Shoun, H, Kitaoka, M. | Deposit date: | 2011-01-24 | Release date: | 2011-09-21 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Interactions between glycoside hydrolase family 94 cellobiose phosphorylase and glucosidase inhibitors J.Appl.Glyosci., 58, 2011
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3RI9
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![BU of 3ri9 by Molmil](/molmil-images/mine/3ri9) | Xylanase C from Aspergillus kawachii F131W mutant | Descriptor: | Endo-1,4-beta-xylanase 3 | Authors: | Fushinobu, S, Uno, T, Kitaoka, M, Hayashi, K, Matsuzawa, H, Wakagi, T. | Deposit date: | 2011-04-13 | Release date: | 2011-09-21 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Mutational analysis of fungal family 11 xylanases on pH optimum determination J.APPL.GLYOSCI., 58, 2011
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3RI8
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![BU of 3ri8 by Molmil](/molmil-images/mine/3ri8) | Xylanase C from Aspergillus kawachii D37N mutant | Descriptor: | Endo-1,4-beta-xylanase 3 | Authors: | Fushinobu, S, Uno, T, Kitaoka, M, Hayashi, K, Matsuzawa, H, Wakagi, T. | Deposit date: | 2011-04-13 | Release date: | 2011-10-12 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Mutational analysis of fungal family 11 xylanases on pH optimum determination J.APPL.GLYOSCI., 58, 2011
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3QG0
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![BU of 3qg0 by Molmil](/molmil-images/mine/3qg0) | Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Phosphate and 1-Deoxynojirimycin | Descriptor: | 1-DEOXYNOJIRIMYCIN, Cellobiose Phosphorylase, PHOSPHATE ION, ... | Authors: | Fushinobu, S, Hidaka, M, Hayashi, A.M, Wakagi, T, Shoun, H, Kitaoka, M. | Deposit date: | 2011-01-24 | Release date: | 2011-09-21 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Interactions between glycoside hydrolase family 94 cellobiose phosphorylase and glucosidase inhibitors J.Appl.Glyosci., 58, 2011
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1WDE
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![BU of 1wde by Molmil](/molmil-images/mine/1wde) | Crystal structure of the conserved hypothetical protein APE0931 from Aeropyrum pernix K1 | Descriptor: | Probable diphthine synthase | Authors: | Kishishita, S, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-13 | Release date: | 2004-11-13 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2. Acta Crystallogr.,Sect.D, 64, 2008
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1WG8
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![BU of 1wg8 by Molmil](/molmil-images/mine/1wg8) | |
4P35
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![BU of 4p35 by Molmil](/molmil-images/mine/4p35) | Crystal structure of DJ-1 with Zinc(II) bound (crystal I) | Descriptor: | CHLORIDE ION, GLYCEROL, Protein DJ-1, ... | Authors: | Tashiro, S, Wu, C.-X, Hoang, Q.Q, Caaveiro, J.M.M, Tsumoto, K. | Deposit date: | 2014-03-05 | Release date: | 2014-04-09 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Thermodynamic and Structural Characterization of the Specific Binding of Zn(II) to Human Protein DJ-1. Biochemistry, 53, 2014
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4P2G
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![BU of 4p2g by Molmil](/molmil-images/mine/4p2g) | Crystal structure of DJ-1 in sulfinic acid form (aged crystal) | Descriptor: | 1,2-ETHANEDIOL, PENTAETHYLENE GLYCOL, Protein DJ-1 | Authors: | Tashiro, S, Wu, C.-X, Hoang, Q.Q, Caaveiro, J.M.M, Tsumoto, K. | Deposit date: | 2014-03-04 | Release date: | 2014-04-09 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Thermodynamic and Structural Characterization of the Specific Binding of Zn(II) to Human Protein DJ-1. Biochemistry, 53, 2014
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4P36
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![BU of 4p36 by Molmil](/molmil-images/mine/4p36) | Crystal structure of DJ-1 With Zn(II) bound (crystal 2) | Descriptor: | 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL, Protein DJ-1, ZINC ION | Authors: | Tashiro, S, Wu, C.-X, Hoang, Q.Q, Caaveiro, J.M.M, Tsumoto, K. | Deposit date: | 2014-03-05 | Release date: | 2014-04-09 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.182 Å) | Cite: | Thermodynamic and Structural Characterization of the Specific Binding of Zn(II) to Human Protein DJ-1. Biochemistry, 53, 2014
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