3WAW
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![BU of 3waw by Molmil](/molmil-images/mine/3waw) | Crystal Structure of Autotaxin in Complex with 2BoA | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | Authors: | Nishimasu, H, Ishitani, R, Nureki, O. | Deposit date: | 2013-05-09 | Release date: | 2013-07-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.954 Å) | Cite: | Screening and X-ray Crystal Structure-based Optimization of Autotaxin (ENPP2) Inhibitors, Using a Newly Developed Fluorescence Probe Acs Chem.Biol., 8, 2013
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3VW2
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![BU of 3vw2 by Molmil](/molmil-images/mine/3vw2) | Crystal Strucuture of The Berberine-bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium | Descriptor: | BERBERINE, Putative regulatory protein, SULFATE ION | Authors: | Sakurai, K, Nikaido, E, Nakashima, R, Yamasaki, S, Yamaguchi, A, Nishino, K. | Deposit date: | 2012-07-30 | Release date: | 2013-07-03 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.34 Å) | Cite: | The crystal structure of multidrug-resistance regulator RamR with multiple drugs Nat Commun, 4, 2013
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3W9I
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![BU of 3w9i by Molmil](/molmil-images/mine/3w9i) | Structural basis for the inhibition of bacterial multidrug exporters | Descriptor: | DODECYL-BETA-D-MALTOSIDE, Multidrug resistance protein MexB | Authors: | Sakurai, K, Nakashima, R, Hayashi, K, Yamaguchi, A. | Deposit date: | 2013-04-04 | Release date: | 2013-07-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.71 Å) | Cite: | Structural basis for the inhibition of bacterial multidrug exporters Nature, 500, 2013
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3W9J
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![BU of 3w9j by Molmil](/molmil-images/mine/3w9j) | Structural basis for the inhibition of bacterial multidrug exporters | Descriptor: | DODECYL-BETA-D-MALTOSIDE, Multidrug resistance protein MexB, [{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate | Authors: | Sakurai, K, Nakashima, R, Hayashi, K, Yamaguchi, A. | Deposit date: | 2013-04-04 | Release date: | 2013-07-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.15 Å) | Cite: | Structural basis for the inhibition of bacterial multidrug exporters Nature, 500, 2013
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1WJX
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![BU of 1wjx by Molmil](/molmil-images/mine/1wjx) | Crystal sturucture of TT0801 from Thermus thermophilus | Descriptor: | POTASSIUM ION, SsrA-binding protein | Authors: | Bessho, Y, Shibata, R, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-29 | Release date: | 2004-11-29 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA. Proc.Natl.Acad.Sci.Usa, 104, 2007
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2LAA
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![BU of 2laa by Molmil](/molmil-images/mine/2laa) | |
2LHI
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![BU of 2lhi by Molmil](/molmil-images/mine/2lhi) | Solution structure of Ca2+/CNA1 peptide-bound yCaM | Descriptor: | CALCIUM ION, Calmodulin,Serine/threonine-protein phosphatase 2B catalytic subunit A1 | Authors: | Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F. | Deposit date: | 2011-08-10 | Release date: | 2012-08-29 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin. Genes Cells, 17, 2012
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2LHH
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![BU of 2lhh by Molmil](/molmil-images/mine/2lhh) | Solution structure of Ca2+-bound yCaM | Descriptor: | CALCIUM ION, Calmodulin | Authors: | Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F. | Deposit date: | 2011-08-10 | Release date: | 2012-08-29 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin. Genes Cells, 17, 2012
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5XSZ
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![BU of 5xsz by Molmil](/molmil-images/mine/5xsz) | Crystal structure of zebrafish lysophosphatidic acid receptor LPA6 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Lysophosphatidic acid receptor 6a,Endolysin,Lysophosphatidic acid receptor 6a | Authors: | Taniguchi, R, Nishizawa, T, Ishitani, R, Nureki, O. | Deposit date: | 2017-06-16 | Release date: | 2017-08-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Structural insights into ligand recognition by the lysophosphatidic acid receptor LPA6 Nature, 548, 2017
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2E3C
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![BU of 2e3c by Molmil](/molmil-images/mine/2e3c) | |
2YWF
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![BU of 2ywf by Molmil](/molmil-images/mine/2ywf) | Crystal structure of GMPPNP-bound LepA from Aquifex aeolicus | Descriptor: | GTP-binding protein lepA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | Authors: | Kawazoe, M, Takemoto, C, Kaminishi, T, Nishino, A, Nakayama-Ushikoshi, R, Hanawa-Suetsugu, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2007-04-20 | Release date: | 2008-04-29 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.24 Å) | Cite: | Crystal structures of GTP-binding protein LepA from Aquifex aeolicus To be Published
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2YWG
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![BU of 2ywg by Molmil](/molmil-images/mine/2ywg) | Crystal structure of GTP-bound LepA from Aquifex aeolicus | Descriptor: | GTP-binding protein LepA, GUANOSINE-5'-TRIPHOSPHATE | Authors: | Kawazoe, M, Takemoto, C, Kaminishi, T, Nishino, A, Nakayama-Ushikoshi, R, Hanawa-Suetsugu, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2007-04-20 | Release date: | 2008-04-29 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.94 Å) | Cite: | Crystal structures of GTP-binding protein LepA from Aquifex aeolicus To be Published
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2YWE
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![BU of 2ywe by Molmil](/molmil-images/mine/2ywe) | Crystal structure of LepA from Aquifex aeolicus | Descriptor: | GTP-binding protein lepA | Authors: | Kawazoe, M, Takemoto, C, Kaminishi, T, Nishino, A, Nakayama-Ushikoshi, R, Hanawa-Suetsugu, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2007-04-20 | Release date: | 2008-04-29 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | Crystal structures of GTP-binding protein LepA from Aquifex aeolicus To be Published
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3VQW
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![BU of 3vqw by Molmil](/molmil-images/mine/3vqw) | Crystal structure of the SeMet substituted catalytic domain of pyrrolysyl-tRNA synthetase | Descriptor: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Pyrrolysine--tRNA ligase | Authors: | Yanagisawa, T, Sumida, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2012-04-01 | Release date: | 2013-01-02 | Last modified: | 2013-09-04 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site Acta Crystallogr.,Sect.D, 69, 2013
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3VQY
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![BU of 3vqy by Molmil](/molmil-images/mine/3vqy) | Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with BocLys and AMPPNP (form 2) | Descriptor: | MAGNESIUM ION, N~6~-(tert-butoxycarbonyl)-L-lysine, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... | Authors: | Yanagisawa, T, Sumida, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2012-04-02 | Release date: | 2013-01-02 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site Acta Crystallogr.,Sect.D, 69, 2013
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3VVR
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![BU of 3vvr by Molmil](/molmil-images/mine/3vvr) | Crystal structure of MATE in complex with MaD5 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein, macrocyclic peptide | Authors: | Tanaka, Y, Ishitani, R, Nureki, O. | Deposit date: | 2012-07-27 | Release date: | 2013-04-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature, 496, 2013
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3VWA
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![BU of 3vwa by Molmil](/molmil-images/mine/3vwa) | Crystal structure of Cex1p | Descriptor: | Cytoplasmic export protein 1 | Authors: | Nozawa, K, Ishitani, R, Nureki, O. | Deposit date: | 2012-08-13 | Release date: | 2013-06-05 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm Nucleic Acids Res., 41, 2013
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3VVS
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![BU of 3vvs by Molmil](/molmil-images/mine/3vvs) | Crystal structure of MATE in complex with MaD3S | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein, macrocyclic peptide | Authors: | Tanaka, Y, Ishitani, R, Nureki, O. | Deposit date: | 2012-07-27 | Release date: | 2013-04-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature, 496, 2013
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3VVO
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![BU of 3vvo by Molmil](/molmil-images/mine/3vvo) | |
3VVN
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![BU of 3vvn by Molmil](/molmil-images/mine/3vvn) | |
2MX2
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![BU of 2mx2 by Molmil](/molmil-images/mine/2mx2) | UBX-L domain of VCIP135 | Descriptor: | Deubiquitinating protein VCIP135 | Authors: | Iwazu, T, Murayama, S, Igarashi, R, Hrioaki, H, Shirakawa, M, Tochio, H. | Deposit date: | 2014-12-07 | Release date: | 2016-07-13 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure and interaction mode of the UBX-L domain of VCIP135 determined by solution NMR spectroscopy To be Published
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3WO7
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![BU of 3wo7 by Molmil](/molmil-images/mine/3wo7) | Crystal structure of YidC from Bacillus halodurans (form II) | Descriptor: | COPPER (II) ION, Membrane protein insertase YidC 2 | Authors: | Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O. | Deposit date: | 2013-12-20 | Release date: | 2014-04-23 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (3.201 Å) | Cite: | Structural basis of Sec-independent membrane protein insertion by YidC. Nature, 509, 2014
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3UG9
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![BU of 3ug9 by Molmil](/molmil-images/mine/3ug9) | Crystal Structure of the Closed State of Channelrhodopsin | Descriptor: | Archaeal-type opsin 1, Archaeal-type opsin 2, OLEIC ACID, ... | Authors: | Kato, H.E, Ishitani, R, Nureki, O. | Deposit date: | 2011-11-02 | Release date: | 2012-01-25 | Last modified: | 2017-08-09 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of the channelrhodopsin light-gated cation channel Nature, 482, 2012
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2ZBY
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![BU of 2zby by Molmil](/molmil-images/mine/2zby) | Crystal structure of vitamin D hydroxylase cytochrome P450 105A1 (R84A mutant) | Descriptor: | Cytochrome P450-SU1, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Sugimoto, H, Shinkyo, R, Hayashi, K, Yoneda, S, Yamada, M, Kamakura, M, Ikushiro, S, Shiro, Y, Sakaki, T. | Deposit date: | 2007-10-30 | Release date: | 2008-04-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal Structure of CYP105A1 (P450SU-1) in Complex with 1alpha,25-Dihydroxyvitamin D3 Biochemistry, 47, 2008
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3WO6
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![BU of 3wo6 by Molmil](/molmil-images/mine/3wo6) | Crystal structure of YidC from Bacillus halodurans (form I) | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CADMIUM ION, Membrane protein insertase YidC 2 | Authors: | Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O. | Deposit date: | 2013-12-20 | Release date: | 2014-04-23 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.403 Å) | Cite: | Structural basis of Sec-independent membrane protein insertion by YidC. Nature, 509, 2014
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