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PDB: 167 results

6JKX
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BU of 6jkx by Molmil
Crystal structure of peptidyl-tRNA hydrolase with multiple sodium and chloride ions at 1.08 A resolution.
Descriptor: CHLORIDE ION, METHANOL, Peptidyl-tRNA hydrolase, ...
Authors:Viswanathan, V, Sharma, P, Bhushan, A, Sharma, S, Singh, T.P.
Deposit date:2019-03-03
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Crystal structure of peptidyl-tRNA hydrolase with multiple sodium and chloride ions at 1.08 A resolution.
To Be Published
6JJ1
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BU of 6jj1 by Molmil
Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii at 0.97 A resolution with disordered five N-terminal residues
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Peptidyl-tRNA hydrolase
Authors:Iqbal, N, Sharma, P, Chaudhary, A, Sharma, S, Singh, T.P.
Deposit date:2019-02-24
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii at 0.97 A resolution with disordered five N-terminal residues
To Be Published
6JGU
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BU of 6jgu by Molmil
Crystal structure at atomic resolution reveals the catalytic mechanism in peptidyl-tRNA hydrolase from Acinetobacter baumannii.
Descriptor: Peptidyl-tRNA hydrolase
Authors:Viswanathan, V, Sharma, P, Sharma, S, Singh, T.P.
Deposit date:2019-02-14
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Crystal structure at atomic resolution reveals the catalytic mechanism in peptidyl-tRNA hydrolase from Acinetobacter baumannii.
To Be Published
4FNN
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BU of 4fnn by Molmil
Crystal structure of the complex of CPGRP-S with stearic acid at 2.2 A RESOLUTION
Descriptor: Peptidoglycan recognition protein 1, STEARIC ACID
Authors:Dube, D, Sharma, P, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2012-06-20
Release date:2012-07-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural basis of the binding of fatty acids to peptidoglycan recognition protein, PGRP-S through second binding site.
Arch.Biochem.Biophys., 529, 2013
6JJQ
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BU of 6jjq by Molmil
Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii at 0.99 A resolution.
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Peptidyl-tRNA hydrolase, ...
Authors:Viswanathan, V, Bairagya, H.R, Sharma, P, Sharma, S, Singh, T.P.
Deposit date:2019-02-26
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii at 0.99 A resolution.
To Be Published
4WF5
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BU of 4wf5 by Molmil
Crystal structure of E.Coli DsbA soaked with compound 4
Descriptor: 1,2-ETHANEDIOL, 4-methyl-2-[4-(trifluoromethyl)phenyl]-1,3-thiazole-5-carboxylic acid, COPPER (II) ION, ...
Authors:Adams, L.A, Sharma, P, Mohanty, B, Ilyichova, O.V, Mulcair, M.D, Williams, M.L, Gleeson, E.C, Totsika, M, Doak, B.C, Caria, S, Rimmer, K, Shouldice, S.R, Vazirani, M, Headey, S.J, Plumb, B.R, Martin, J.L, Heras, B, Simpson, J.S, Scanlon, M.J.
Deposit date:2014-09-12
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Application of Fragment-Based Screening to the Design of Inhibitors of Escherichia coli DsbA.
Angew.Chem.Int.Ed.Engl., 54, 2015
4WEY
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BU of 4wey by Molmil
Crystal structure of E.Coli DsbA in complex with compound 17
Descriptor: 1,2-ETHANEDIOL, N-({4-methyl-2-[4-(trifluoromethyl)phenyl]-1,3-thiazol-5-yl}carbonyl)-L-serine, Thiol:disulfide interchange protein
Authors:Adams, L.A, Sharma, P, Mohanty, B, Ilyichova, O.V, Mulcair, M.D, Williams, M.L, Gleeson, E.C, Totsika, M, Doak, B.C, Caria, S, Rimmer, K, Shouldice, S.R, Vazirani, M, Headey, S.J, Plumb, B.R, Martin, J.L, Heras, B, Simpson, J.S, Scanlon, M.J.
Deposit date:2014-09-11
Release date:2015-01-21
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Application of Fragment-Based Screening to the Design of Inhibitors of Escherichia coli DsbA.
Angew.Chem.Int.Ed.Engl., 54, 2015
4WF4
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BU of 4wf4 by Molmil
Crystal structure of E.Coli DsbA co-crystallised in complex with compound 4
Descriptor: 1,2-ETHANEDIOL, 4-methyl-2-[4-(trifluoromethyl)phenyl]-1,3-thiazole-5-carboxylic acid, Thiol:disulfide interchange protein
Authors:Adams, L.A, Sharma, P, Mohanty, B, Ilyichova, O.V, Mulcair, M.D, Williams, M.L, Gleeson, E.C, Totsika, M, Doak, B.C, Caria, S, Rimmer, K, Shouldice, S.R, Vazirani, M, Headey, S.J, Plumb, B.R, Martin, J.L, Heras, B, Simpson, J.S, Scanlon, M.J.
Deposit date:2014-09-12
Release date:2015-01-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Application of Fragment-Based Screening to the Design of Inhibitors of Escherichia coli DsbA.
Angew.Chem.Int.Ed.Engl., 54, 2015
6X7H
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BU of 6x7h by Molmil
Cyanovirin-N Mutation I34Y with Dimannose bound
Descriptor: Cyanovirin-N, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
Authors:Fromme, R, Sharma, P, Ghirlanda, G.
Deposit date:2020-05-30
Release date:2021-06-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Design of novel cyanovirin-N variants by modulation of binding dynamics through distal mutations.
Elife, 11, 2022
6A8D
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BU of 6a8d by Molmil
Crystal Structure of Chlamydomonas reinhardtii ARF
Descriptor: ARF/SAR superfamily small monomeric GTP binding protein, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kumari, S, Goel, M, Kateriya, S, Sharma, P.
Deposit date:2018-07-06
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Crystal structure of Chlamydomonas reinhardtii Arf
To Be Published
6LSO
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BU of 6lso by Molmil
Crystal structure of a dimeric inhibited of peptidyl tRNA hydrolase at 1.76A resolution
Descriptor: Peptidyl-tRNA hydrolase
Authors:Bairagya, H.R, Ahmad, M.I, Sharma, P, Singh, T.P.
Deposit date:2020-01-17
Release date:2020-02-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of a dimeric inhibited of peptidyl tRNA hydrolase at 1.76A resolution
To Be Published
4OOH
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BU of 4ooh by Molmil
Structure of RIBONUCLEASE A at 40C
Descriptor: Ribonuclease pancreatic
Authors:Yadav, S.P.S, Sharma, P, Ashish, F.N.U.
Deposit date:2014-02-02
Release date:2015-02-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structure of RIBONUCLEASE A at 40C
To be Published
7XLO
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BU of 7xlo by Molmil
Crystal Structure of the Catalytic Domain of Inosine Monophosphate Dehydrogenase (IMPDH) from Methanocaldococcus jannaschii
Descriptor: Inosine-5'-monophosphate dehydrogenase
Authors:Bellur, A, Sharma, P, Balaram, H.
Deposit date:2022-04-22
Release date:2022-05-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the Catalytic Domain of Inosine Monophosphate Dehydrogenase (IMPDH) from Methanocaldococcus jannaschii
To Be Published
8FTJ
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BU of 8ftj by Molmil
Crystal structure of human NEIL1 (P2G (242K) C(delta)100) glycosylase bound to DNA duplex containing urea
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*TP*CP*CP*AP*UDV*GP*TP*CP*TP*AP*CP)-3'), DNA (5'-D(*TP*AP*GP*AP*CP*AP*TP*GP*GP*AP*CP*GP*G)-3'), ...
Authors:Tomar, R, Sharma, P, Harp, J.M, Egli, M, Stone, M.P.
Deposit date:2023-01-12
Release date:2023-04-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Base excision repair of the N-(2-deoxy-d-erythro-pentofuranosyl)-urea lesion by the hNEIL1 glycosylase.
Nucleic Acids Res., 51, 2023
7S1C
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BU of 7s1c by Molmil
Crystal structure of E.coli DsbA in complex with compound MIPS-0001897 (compound 1)
Descriptor: COPPER (II) ION, Thiol:disulfide interchange protein DsbA, ~{N}-methyl-1-(3-thiophen-3-ylphenyl)methanamine
Authors:Heras, B, Scanlon, M.J, Martin, J.L, Sharma, P.
Deposit date:2021-09-02
Release date:2023-02-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Fluoromethylketone-fragment conjugates designed as covalent modifiers of EcDsbA are atypical substrates
Chemrxiv, 2022
5VPN
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BU of 5vpn by Molmil
E. coli Quinol fumarate reductase FrdA E245Q mutation
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Starbird, C.A, Maklashina, E, Sharma, P, Qualls-Histed, S, Cecchini, G, Iverson, T.M.
Deposit date:2017-05-05
Release date:2017-06-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (4.2232 Å)
Cite:Structural and biochemical analyses reveal insights into covalent flavinylation of the Escherichia coli Complex II homolog quinol:fumarate reductase.
J. Biol. Chem., 292, 2017
8JIV
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BU of 8jiv by Molmil
Atomic structure of wheat ribosome reveals unique features of the plant ribosomes
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Mishra, R.K, Sharma, P, Hussain, T.
Deposit date:2023-05-28
Release date:2024-03-27
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes.
Structure, 32, 2024
7Y3U
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BU of 7y3u by Molmil
Crystal structure of the complex of Lactoperoxidase with Nitric oxide at 2.50A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CALCIUM ION, ...
Authors:Singh, P.K, Viswanathan, V, Ahmad, N, Rani, C, Sharma, P, Sharma, S, Singh, T.P.
Deposit date:2022-06-13
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the complex of Lactoperoxidase with Nitric oxide at 2.50A resolution
To Be Published
6IX6
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BU of 6ix6 by Molmil
Crystal structure of the complex of peptidyl-tRNA hydrolase with N-propanol at 1.43 A resolution
Descriptor: N-PROPANOL, Peptidyl-tRNA hydrolase
Authors:Viswanathan, V, Sharma, P, Chaudhary, A, Sharma, S, Singh, T.P.
Deposit date:2018-12-09
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Crystal structure of the complex of peptidyl-tRNA hydrolase with N-propanol at 1.43 A resolution
To Be Published
6IYE
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BU of 6iye by Molmil
Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii with 12% PEG 1500 at 1.55 A resolution.
Descriptor: Peptidyl-tRNA hydrolase
Authors:Viswanathan, V, Sharma, P, Chaudhary, A, Sharma, S, Singh, T.P.
Deposit date:2018-12-15
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii with 12% PEG 1500 at 1.55 A resolution.
To Be Published
6IVV
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BU of 6ivv by Molmil
Structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii with multiple surface binding regions at 1.26A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Viswanathan, V, Sharma, P, Chaudhary, A, Sharma, S, Singh, T.P.
Deposit date:2018-12-04
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structure of peptide t-RNA hydrolase from Acinetobacter baumannii with multiple surface binding sites at 1.26 Angstrom resolution.
To Be Published
8S8H
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BU of 8s8h by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8S8D
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BU of 8s8d by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8S8G
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BU of 8s8g by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-03-06
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024
8RW1
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BU of 8rw1 by Molmil
Structure of a yeast 48S-AUC preinitiation complex in closed conformation
Descriptor: 18S ribosomal RNA, 40S ribosomal protein L41-A, 40S ribosomal protein S12, ...
Authors:Villamayor-Belinchon, L, Sharma, P, Llacer, J.L, Hussain, T.
Deposit date:2024-02-02
Release date:2024-09-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural basis of AUC codon discrimination during translation initiation in yeast.
Nucleic Acids Res., 52, 2024

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PDB entries from 2024-11-06

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