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PDB: 233 results

4HR6
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Crystal structure of snake gourd (Trichosanthes anguina) seed lectin, a three chain homologue of type II RIPs
Descriptor: LECTIN, methyl alpha-D-galactopyranoside
Authors:Sharma, A, Pohlentz, G, Bobbili, K.B, Jeyaprakash, A.A, Chandran, T, Mormann, M, Swamy, M.J, Vijayan, M.
Deposit date:2012-10-26
Release date:2013-08-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The sequence and structure of snake gourd (Trichosanthes anguina) seed lectin, a three-chain nontoxic homologue of type II RIPs.
Acta Crystallogr.,Sect.D, 69, 2013
4IR1
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Polymerase-DNA Complex
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Sharma, A, Nair, D.T.
Deposit date:2013-01-14
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coli.
Nucleic Acids Res., 41, 2013
4IR9
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Polymerase-DNA complex
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(P*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Sharma, A, Nair, D.T.
Deposit date:2013-01-14
Release date:2013-04-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coli.
Nucleic Acids Res., 41, 2013
2OGW
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BU of 2ogw by Molmil
Structure of ABC type zinc transporter from E. coli
Descriptor: High-affinity zinc uptake system protein znuA precursor, ZINC ION
Authors:Sharma, A, Yogavel, M.
Deposit date:2007-01-09
Release date:2007-03-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural Analysis of ABC-family Periplasmic Zinc Binding Protein Provides New Insights Into Mechanism of Ligand Uptake and Release
J.Mol.Biol., 367, 2007
6S8L
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Structure, Thermodynamics, and Kinetics of Plinabulin Binding to two Tubulin Isotypes
Descriptor: (3Z,6Z)-3-benzylidene-6-[(5-tert-butyl-1H-imidazol-4-yl)methylidene]piperazine-2,5-dione, Designed ankyrin repeat protein (DARPIN) D1, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Sharma, A, Olieric, N, Steinmetz, M.
Deposit date:2019-07-10
Release date:2019-11-27
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Structure, Thermodynamics, and Kinetics of Plinabulin Binding to Two Tubulin Isotypes
Chem, 2019
2XEV
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BU of 2xev by Molmil
Crystal structure of the TPR domain of Xanthomonas campestris ybgF
Descriptor: CHLORIDE ION, YBGF, ZINC ION
Authors:Krachler, A.M, Sharma, A, Kleanthous, C.
Deposit date:2010-05-18
Release date:2010-09-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Tola Modulates the Oligomeric Status of Ybgf in the Bacterial Periplasm.
J.Mol.Biol., 403, 2010
3KNP
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BU of 3knp by Molmil
Crystal structure of DTD from Plasmodium falciparum
Descriptor: D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-12
Release date:2009-12-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3KOB
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DTD from Plasmodium falciparum in complex with D-Glutamic acid
Descriptor: D-GLUTAMIC ACID, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3KO4
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Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Plasmodium falciparum in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
3KOC
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DTD from Plasmodium falciparum in complex with D-Histidine
Descriptor: D-HISTIDINE, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Manickam, Y, Bhatt, T.K, Sharma, A.
Deposit date:2009-11-13
Release date:2009-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase
J.Biol.Chem., 285, 2010
4LNS
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BU of 4lns by Molmil
Crystal structure of Asparagine synthetase A (AsnA) from Trypanosoma brucei
Descriptor: Asparagine synthetase a
Authors:Khan, S, Madhubala, R, Sharma, A.
Deposit date:2013-07-12
Release date:2014-03-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification and functional characterization of a novel bacterial type asparagine synthetase A: a tRNA synthetase paralog from Leishmania donovani.
J.Biol.Chem., 289, 2014
7WAL
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BU of 7wal by Molmil
Glutamyl-tRNA synthetase from Plasmodium falciparum (PfERS) in complex with Co
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, COBALT (II) ION, ...
Authors:Sharma, V, Manickam, Y, Babbar, P, Sharma, A.
Deposit date:2021-12-14
Release date:2022-12-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structural characterization of glutamyl-tRNA synthetase (GluRS) from Plasmodium falciparum.
Mol.Biochem.Parasitol., 253, 2022
7WAK
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BU of 7wak by Molmil
Glutamyl-tRNA synthetase from Plasmodium falciparum (PfERS) in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, Glutamyl-tRNA synthetase, ...
Authors:Sharma, V, Manickam, Y, Babbar, P, Sharma, A.
Deposit date:2021-12-14
Release date:2022-12-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.782 Å)
Cite:Structural characterization of glutamyl-tRNA synthetase (GluRS) from Plasmodium falciparum.
Mol.Biochem.Parasitol., 253, 2022
7WAJ
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BU of 7waj by Molmil
Glutamyl-tRNA synthetase from Plasmodium falciparum (PfERS) complexed with ATP and Co
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Sharma, V, Manickam, Y, Babbar, P, Sharma, A.
Deposit date:2021-12-14
Release date:2022-12-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.254 Å)
Cite:Structural characterization of glutamyl-tRNA synthetase (GluRS) from Plasmodium falciparum.
Mol.Biochem.Parasitol., 253, 2022
7WAO
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BU of 7wao by Molmil
Glutamyl-tRNA synthetase from Plasmodium falciparum (PfERS) in complex with Mn
Descriptor: CHLORIDE ION, Glutamyl-tRNA synthetase, MANGANESE (II) ION
Authors:Sharma, V, Manickam, Y, Babbar, P, Sharma, A.
Deposit date:2021-12-14
Release date:2022-12-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.582 Å)
Cite:Structural characterization of glutamyl-tRNA synthetase (GluRS) from Plasmodium falciparum.
Mol.Biochem.Parasitol., 253, 2022
7WAI
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BU of 7wai by Molmil
Glutamyl-tRNA synthetase from Plasmodium falciparum (PfERS)
Descriptor: CHLORIDE ION, Glutamyl-tRNA synthetase
Authors:Sharma, V, Manickam, Y, Harlos, K, Sharma, A.
Deposit date:2021-12-14
Release date:2022-12-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:Structural characterization of glutamyl-tRNA synthetase (GluRS) from Plasmodium falciparum.
Mol.Biochem.Parasitol., 253, 2022
5X6N
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BU of 5x6n by Molmil
Structure of P. Knowlesi DBL Domain Capable of binding Human Duffy Antigen
Descriptor: Duffy binding protein, SULFATE ION, octyl beta-D-glucopyranoside
Authors:Singh, S.K, Hora, R, Belrhali, H, Chitnis, C, Sharma, A.
Deposit date:2017-02-22
Release date:2017-03-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for Duffy recognition by the malaria parasite Duffy-binding-like domain
Nature, 439, 2006
5XIF
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BU of 5xif by Molmil
Crystal Structure of Prolyl-tRNA Synthetase (PRS) from Toxoplasma gondii
Descriptor: CHLORIDE ION, Prolyl-tRNA synthetase (ProRS)
Authors:Jain, V, Manickam, Y, Sharma, A.
Deposit date:2017-04-26
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Targeting Prolyl-tRNA Synthetase to Accelerate Drug Discovery against Malaria, Leishmaniasis, Toxoplasmosis, Cryptosporidiosis, and Coccidiosis
Structure, 25, 2017
5XIQ
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BU of 5xiq by Molmil
Crystal Structure of Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in complex with Halofuginone
Descriptor: 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Jain, V, Manickam, Y, Sharma, A.
Deposit date:2017-04-26
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Targeting Prolyl-tRNA Synthetase to Accelerate Drug Discovery against Malaria, Leishmaniasis, Toxoplasmosis, Cryptosporidiosis, and Coccidiosis
Structure, 25, 2017
5XII
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BU of 5xii by Molmil
Crystal Structure of Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in complex with inhibitor 6
Descriptor: 1,2-ETHANEDIOL, 6-chloranyl-7-fluoranyl-3-[3-[(2R)-3-oxidanylidenepiperidin-2-yl]propyl]quinazolin-4-one, CHLORIDE ION, ...
Authors:Jain, V, Manickam, Y, Sharma, A.
Deposit date:2017-04-26
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Targeting Prolyl-tRNA Synthetase to Accelerate Drug Discovery against Malaria, Leishmaniasis, Toxoplasmosis, Cryptosporidiosis, and Coccidiosis
Structure, 25, 2017
5XIL
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BU of 5xil by Molmil
Crystal Structure of Leishmania major Prolyl-tRNA Synthetase (LmPRS)
Descriptor: ACETATE ION, MAGNESIUM ION, Putative prolyl-tRNA synthetase, ...
Authors:Jain, V, Manickam, Y, Sharma, A.
Deposit date:2017-04-26
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Targeting Prolyl-tRNA Synthetase to Accelerate Drug Discovery against Malaria, Leishmaniasis, Toxoplasmosis, Cryptosporidiosis, and Coccidiosis
Structure, 25, 2017
6JRE
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BU of 6jre by Molmil
Structure of N-terminal domain of Plasmodium vivax p43 (PfNTD) solved by Co-SAD phasing
Descriptor: Aminoacyl-tRNA synthetase-interacting multifunctional protein p43, COBALT (II) ION
Authors:Manickam, Y, Harlos, K, Sharma, M, Gupta, S, Sharma, A.
Deposit date:2019-04-03
Release date:2020-03-11
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal structures of the two domains that constitute the Plasmodium vivax p43 protein.
Acta Crystallogr D Struct Biol, 76, 2020
4V5K
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BU of 4v5k by Molmil
Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Ng, C.L, Lang, K, Meenan, N.A.G, Sharma, A, Kelley, A.C, Kleanthous, C, Ramakrishnan, V.
Deposit date:2010-05-29
Release date:2014-07-09
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Basis for 16S Ribosomal RNA Cleavage by the Cytotoxic Domain of Colicin E3.
Nat.Struct.Mol.Biol., 17, 2010
6IPA
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BU of 6ipa by Molmil
C-terminal EMAP II-like domain of p43 refined against twinned data
Descriptor: aminoacyl-tRNA synthetase-interacting multifunctional protein p43
Authors:Manickam, Y, Harlos, K, Gupta, S, Sharma, A.
Deposit date:2018-11-02
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Crystal structures of the two domains that constitute the Plasmodium vivax p43 protein.
Acta Crystallogr D Struct Biol, 76, 2020
6L4Q
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Crystal Structure of Lysyl-tRNA Synthetase from Plasmodium falciparum complexed with L-lysine and Clado-B
Descriptor: (3R)-3-[[(3R)-3-methylpiperidin-1-yl]methyl]-6,8-bis(oxidanyl)-3,4-dihydroisochromen-1-one, LYSINE, Lysine--tRNA ligase
Authors:Babbar, P, Sharma, A, Manickam, Y, Mishra, S, Harlos, K.
Deposit date:2019-10-19
Release date:2021-05-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of Lysyl-tRNA Synthetase from Plasmodium falciparum complexed with L-lysine and Cladosporin inhibitor, Cla-B
Chembiochem, 2021

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