3X07
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![BU of 3x07 by Molmil](/molmil-images/mine/3x07) | Crystal structure of PIP4KIIBETA N203A complex with AMP | Descriptor: | ADENOSINE MONOPHOSPHATE, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta | Authors: | Takeuchi, K, Lo, Y.H, Sumita, K, Senda, M, Terakawa, J, Dimitoris, A, Locasale, J.W, Sasaki, M, Yoshino, H, Zhang, Y, Kahoud, E.R, Takano, T, Yokota, T, Emerling, B, Asara, J.A, Ishida, T, Shimada, I, Daikoku, T, Cantley, L.C, Senda, T, Sasaki, A.T. | Deposit date: | 2014-10-09 | Release date: | 2015-10-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis Mol.Cell, 61, 2016
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3WZZ
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![BU of 3wzz by Molmil](/molmil-images/mine/3wzz) | Crystal structure of PIP4KIIBETA | Descriptor: | Phosphatidylinositol 5-phosphate 4-kinase type-2 beta | Authors: | Takeuchi, K, Lo, Y.H, Sumita, K, Senda, M, Terakawa, J, Dimitoris, A, Locasale, J.W, Sasaki, M, Yoshino, H, Zhang, Y, Kahoud, E.R, Takano, T, Yokota, T, Emerling, B, Asara, J.A, Ishida, T, Shimada, I, Daikoku, T, Cantley, L.C, Senda, T, Sasaki, A.T. | Deposit date: | 2014-10-08 | Release date: | 2015-10-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis Mol.Cell, 61, 2016
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2YVJ
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![BU of 2yvj by Molmil](/molmil-images/mine/2yvj) | Crystal structure of the ferredoxin-ferredoxin reductase (BPHA3-BPHA4)complex | Descriptor: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Biphenyl dioxygenase ferredoxin subunit, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Senda, T, Senda, M. | Deposit date: | 2007-04-12 | Release date: | 2007-10-23 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin J.Mol.Biol., 373, 2007
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2YVF
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![BU of 2yvf by Molmil](/molmil-images/mine/2yvf) | Crystal structure of ferredoxin reductase BPHA4 (hydroquinone) | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, Ferredoxin reductase, ... | Authors: | Senda, T, Senda, M. | Deposit date: | 2007-04-12 | Release date: | 2007-10-16 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin J.Mol.Biol., 373, 2007
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2YVG
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![BU of 2yvg by Molmil](/molmil-images/mine/2yvg) | crystal structure of ferredoxin reductase, BPHA4 (blue-semiquinone) | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Senda, T, Senda, M. | Deposit date: | 2007-04-12 | Release date: | 2007-10-16 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin J.Mol.Biol., 373, 2007
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2E50
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![BU of 2e50 by Molmil](/molmil-images/mine/2e50) | Crystal structure of SET/TAF-1beta/INHAT | Descriptor: | Protein SET, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose | Authors: | Muto, S, Senda, M, Senda, T, Horikoshi, M. | Deposit date: | 2006-12-18 | Release date: | 2007-02-20 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Relationship between the structure of SET/TAF-Ibeta/INHAT and its histone chaperone activity Proc.Natl.Acad.Sci.Usa, 104, 2007
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3WRB
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![BU of 3wrb by Molmil](/molmil-images/mine/3wrb) | Crystal structure of the anaerobic H124F DESb-Gallate complex | Descriptor: | 3,4,5-trihydroxybenzoic acid, FE (II) ION, Gallate dioxygenase | Authors: | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | Deposit date: | 2014-02-21 | Release date: | 2014-04-30 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WRC
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![BU of 3wrc by Molmil](/molmil-images/mine/3wrc) | Crystal structure of the anaerobic DesB-Protocatechuate (PCA) complex | Descriptor: | 3,4-DIHYDROXYBENZOIC ACID, FE (II) ION, Gallate dioxygenase | Authors: | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | Deposit date: | 2014-02-21 | Release date: | 2014-04-30 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WR9
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![BU of 3wr9 by Molmil](/molmil-images/mine/3wr9) | Crystal structure of the Anaerobic DesB-Gallate complex | Descriptor: | 3,4,5-trihydroxybenzoic acid, FE (II) ION, Gallate dioxygenase | Authors: | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | Deposit date: | 2014-02-21 | Release date: | 2014-04-30 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WR3
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![BU of 3wr3 by Molmil](/molmil-images/mine/3wr3) | Crystal structure of the anaerobic DesB-gallate complex | Descriptor: | 3,4,5-trihydroxybenzoic acid, FE (II) ION, Gallate dioxygenase | Authors: | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | Deposit date: | 2014-02-13 | Release date: | 2014-04-30 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WRA
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![BU of 3wra by Molmil](/molmil-images/mine/3wra) | Crystal structure of the desB-Gallate complex exposed to Aerobic Atomosphere | Descriptor: | FE (II) ION, Gallate dioxygenase | Authors: | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | Deposit date: | 2014-02-21 | Release date: | 2014-04-30 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WKU
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![BU of 3wku by Molmil](/molmil-images/mine/3wku) | Crystal structure of the anaerobic DesB-gallate complex | Descriptor: | 3,4,5-trihydroxybenzoic acid, FE (III) ION, Gallate dioxygenase | Authors: | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | Deposit date: | 2013-10-31 | Release date: | 2014-04-30 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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3WR8
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![BU of 3wr8 by Molmil](/molmil-images/mine/3wr8) | Crystal structure of DesB from Sphingobium sp. strain SYK-6 | Descriptor: | FE (II) ION, Gallate dioxygenase | Authors: | Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T. | Deposit date: | 2014-02-21 | Release date: | 2014-04-30 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6 Plos One, 9, 2014
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8JW3
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![BU of 8jw3 by Molmil](/molmil-images/mine/8jw3) | The crystal structure of the viral terpene synthase from Orpheovirus IHUMI-LCC2 | Descriptor: | SULFATE ION, Terpenoid synthase | Authors: | Jung, Y, Mitsuhashi, T, Senda, M, Sato, S, Senda, T, Fujita, M. | Deposit date: | 2023-06-28 | Release date: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Function and Structure of a Terpene Synthase Encoded in a Giant Virus Genome. J.Am.Chem.Soc., 145, 2023
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3AWN
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![BU of 3awn by Molmil](/molmil-images/mine/3awn) | Crystal structure of D-serine dehydratase from chicken kidney (EDTA treated) | Descriptor: | D-serine dehydratase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, H, Senda, M, Venugopalan, N, Yamamoto, A, Senda, T, Ishida, T, Horiike, K. | Deposit date: | 2011-03-25 | Release date: | 2011-06-15 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney. J.Biol.Chem., 286, 2011
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3AWO
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![BU of 3awo by Molmil](/molmil-images/mine/3awo) | Crystal structure of D-serine dehydratase in complex with D-serine from chicken kidney (EDTA-treated) | Descriptor: | D-SERINE, D-serine dehydratase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Tanaka, H, Senda, M, Venugopalan, N, Yamamoto, A, Senda, T, Ishida, T, Horiike, K. | Deposit date: | 2011-03-25 | Release date: | 2011-06-15 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney. J.Biol.Chem., 286, 2011
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2GR2
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![BU of 2gr2 by Molmil](/molmil-images/mine/2gr2) | |
2GQW
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![BU of 2gqw by Molmil](/molmil-images/mine/2gqw) | Crystal structure of Ferredoxin reductase, BphA4 (oxidized form) | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, GLYCEROL, ... | Authors: | Senda, T, Senda, M. | Deposit date: | 2006-04-22 | Release date: | 2007-05-22 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin J.Mol.Biol., 373, 2007
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2GR0
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![BU of 2gr0 by Molmil](/molmil-images/mine/2gr0) | |
2GR3
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![BU of 2gr3 by Molmil](/molmil-images/mine/2gr3) | |
2GR1
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![BU of 2gr1 by Molmil](/molmil-images/mine/2gr1) | |
3ANV
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![BU of 3anv by Molmil](/molmil-images/mine/3anv) | Crystal structure of D-serine dehydratase from chicken kidney (2,3-DAP complex) | Descriptor: | 3-amino-D-alanine, CHLORIDE ION, D-serine dehydratase, ... | Authors: | Tanaka, H, Senda, M, Venugopalan, N, Yamamoto, A, Senda, T, Ishida, T, Horiike, K. | Deposit date: | 2010-09-09 | Release date: | 2011-06-15 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney J.Biol.Chem., 286, 2011
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3ANU
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![BU of 3anu by Molmil](/molmil-images/mine/3anu) | Crystal structure of D-serine dehydratase from chicken kidney | Descriptor: | CHLORIDE ION, D-serine dehydratase, PYRIDOXAL-5'-PHOSPHATE, ... | Authors: | Tanaka, H, Senda, M, Venugopalan, N, Yamamoto, A, Senda, T, Ishida, T, Horiike, K. | Deposit date: | 2010-09-09 | Release date: | 2011-06-15 | Last modified: | 2013-08-07 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney J.Biol.Chem., 286, 2011
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7D6R
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![BU of 7d6r by Molmil](/molmil-images/mine/7d6r) | Crystal structure of the Stx2a complexed with MMA betaAla peptide | Descriptor: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, MMA betaAla peptide, Shiga toxin 2 B subunit, ... | Authors: | Takahashi, M, Tamada, M, Hibino, M, Senda, M, Okuda, A, Miyazawa, A, Senda, T, Nishikawa, K. | Deposit date: | 2020-10-01 | Release date: | 2021-04-14 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin. Commun Biol, 4, 2021
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7D6Q
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![BU of 7d6q by Molmil](/molmil-images/mine/7d6q) | Crystal structure of the Stx2a | Descriptor: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, Shiga toxin 2 B subunit, rRNA N-glycosylase | Authors: | Takahashi, M, Tamada, M, Hibino, M, Senda, M, Okuda, A, Miyazawa, A, Senda, T, Nishikawa, K. | Deposit date: | 2020-10-01 | Release date: | 2021-04-14 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin. Commun Biol, 4, 2021
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