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PDB: 53 results

7TJI
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BU of 7tji by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 2) with flexible Orc6 N-terminal domain
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ...
Authors:Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
Deposit date:2022-01-16
Release date:2022-10-05
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022
7TJH
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BU of 7tjh by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 1) with flexible Orc6 N-terminal domain
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ...
Authors:Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
Deposit date:2022-01-16
Release date:2022-10-05
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022
3ZCD
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BU of 3zcd by Molmil
Native structure of Farnesyl Pyrophosphate Synthase from Pseudomonas aeruginosa PA01.
Descriptor: GERANYLTRANSTRANSFERASE
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2012-11-19
Release date:2013-12-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Characterization of Substrate and Inhibitor Binding to Farnesyl Pyrophosphate Synthase from Pseudomonas Aeruginosa.
Acta Crystallogr.,Sect.D, 71, 2015
3ZMB
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BU of 3zmb by Molmil
Native structure of Farnesyl Pyrophosphate Synthase from Pseudomonas aeruginosa PA01, with bound fragment SPB02696.
Descriptor: 3-(2-oxo-1,3-benzoxazol-3(2H)-yl)propanoic acid, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2013-02-07
Release date:2014-02-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Characterization of Substrate and Inhibitor Binding to Farnesyl Pyrophosphate Synthase from Pseudomonas Aeruginosa
Acta Crystallogr.,Sect.D, 71, 2015
6N65
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BU of 6n65 by Molmil
KRAS G-quadruplex G16T mutant.
Descriptor: KRAS G-quadruplex G16T mutant, POTASSIUM ION
Authors:Schmidberger, J.W, Ou, A, Smith, N.M, Iyer, K.S, Bond, C.S.
Deposit date:2018-11-25
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High resolution crystal structure of a KRAS promoter G-quadruplex reveals a dimer with extensive poly-A pi-stacking interactions for small-molecule recognition.
Nucleic Acids Res., 48, 2020
7TJF
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BU of 7tjf by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA, 84 bp ARS1, ...
Authors:Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
Deposit date:2022-01-16
Release date:2023-01-18
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022
7TJK
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BU of 7tjk by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 2) with docked Orc6 N-terminal domain
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ...
Authors:Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
Deposit date:2022-01-16
Release date:2022-10-05
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022
7TJJ
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BU of 7tjj by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 1) with docked Orc6 N-terminal domain
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ...
Authors:Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
Deposit date:2022-01-16
Release date:2022-10-05
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022
6WCK
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BU of 6wck by Molmil
KRAS G-quadruplex G16T mutant with Bromo Uracil replacing T8 and T16.
Descriptor: DNA (5'-D(*AP*GP*GP*GP*CP*GP*GP*(BRU)P*GP*TP*GP*GP*GP*AP*AP*(BRU)P*AP*GP*GP*GP*AP*A)-3'), POTASSIUM ION
Authors:Schmidberger, J.W, Ou, A, Smith, N.M, Iyer, K.S, Bond, C.S.
Deposit date:2020-03-30
Release date:2020-04-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:High resolution crystal structure of a KRAS promoter G-quadruplex reveals a dimer with extensive poly-A pi-stacking interactions for small-molecule recognition.
Nucleic Acids Res., 48, 2020
3BJX
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BU of 3bjx by Molmil
Structure of a Group I haloacid dehalogenase from Pseudomonas putida strain PP3
Descriptor: Halocarboxylic acid dehalogenase DehI, SULFATE ION
Authors:Schmidberger, J.W, Wilce, M.C.J.
Deposit date:2007-12-05
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of DehI reveals a new alpha-haloacid dehalogenase fold and active-site mechanism
J.Mol.Biol., 378, 2008
3LCC
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BU of 3lcc by Molmil
Structure of a SAM-dependent halide methyltransferase from Arabidopsis thaliana
Descriptor: CHLORIDE ION, Putative methyl chloride transferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Schmidberger, J.W, O'Hagan, D, Naismith, J.H.
Deposit date:2010-01-10
Release date:2010-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Halomethane Biosynthesis: Structure of a SAM-Dependent Halide Methyltransferase from Arabidopsis thaliana
Angew.Chem.Int.Ed.Engl., 49, 2010
4UMJ
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BU of 4umj by Molmil
Native structure of Farnesyl Pyrophosphate Synthase from Pseudomonas aeruginosa PA01, with bound ibandronic acid molecules.
Descriptor: GERANYLTRANSTRANSFERASE, IBANDRONATE, MAGNESIUM ION
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2014-05-18
Release date:2015-03-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Characterization of Substrate and Inhibitor Binding to Farnesyl Pyrophosphate Synthase from Pseudomonas Aeruginosa.
Acta Crystallogr.,Sect.D, 71, 2015
4B9A
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BU of 4b9a by Molmil
Structure of a putative epoxide hydrolase from Pseudomonas aeruginosa.
Descriptor: GLYCEROL, PROBABLE EPOXIDE HYDROLASE, SULFATE ION
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2012-09-03
Release date:2013-02-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery.
Acta Crystallogr.,Sect.F, 69, 2013
4B9E
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BU of 4b9e by Molmil
Structure of a putative epoxide hydrolase from Pseudomonas aeruginosa, with bound MFA.
Descriptor: GLYCEROL, PROBABLE EPOXIDE HYDROLASE, SULFATE ION, ...
Authors:Schmidberger, J.W, Schnell, R, Schneider, G.
Deposit date:2012-09-04
Release date:2013-02-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery.
Acta Crystallogr.,Sect.F, 69, 2013
7JK3
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BU of 7jk3 by Molmil
Structure of Drosophila ORC bound to GC-rich DNA and Cdc6
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein, DNA (33-MER), ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-27
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
7JK5
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BU of 7jk5 by Molmil
Structure of Drosophila ORC bound to DNA
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (32-MER), MAGNESIUM ION, ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-27
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
6ZHI
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BU of 6zhi by Molmil
Structure of the Plasmodium falciparum Hsp70-x substrate binding domain in complex with hydrophobic peptide
Descriptor: ASN-ARG-LEU-LEU-LEU-THR-GLY, Heat shock protein 70
Authors:Schmidt, J, Vakonakis, I.
Deposit date:2020-06-23
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure of the PfHsp70-x SBD
Acta Crystallographica Section F
6EEN
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BU of 6een by Molmil
Crystal structure of a designer Pentatrico Peptide RNA binding protein, bound to a complex RNA target and featuring an infinite superhelix and microheterogeneity.
Descriptor: Designer Pentatricopeptide Protein dPPR10, RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*CP*CP*CP*CP*CP*CP*CP*CP*C)-3'), ...
Authors:Schmidberger, J.W, Bond, C.S.
Deposit date:2018-08-15
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of a designer Pentatrico Peptide RNA binding protein, bound to a complex RNA target and featuring an infinite superhelix and microheterogeneity.
To Be Published
7JGS
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BU of 7jgs by Molmil
Structure of Drosophila ORC bound to poly(dA/dT) DNA and Cdc6 (conformation 2)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AT22044p1, Cell division control protein, ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-19
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
7JK4
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BU of 7jk4 by Molmil
Structure of Drosophila ORC bound to AT-rich DNA and Cdc6
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein, DNA (34-MER), ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-27
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
7JK6
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BU of 7jk6 by Molmil
Structure of Drosophila ORC in the active conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Origin recognition complex subunit 1, ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-27
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
7JK2
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BU of 7jk2 by Molmil
Structure of Drosophila ORC bound to poly(dA/dT) DNA and Cdc6 (conformation 1)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein, DNA (33-MER), ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-27
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
7JGR
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BU of 7jgr by Molmil
Structure of Drosophila ORC bound to DNA (84 bp) and Cdc6
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AT22044p1, Cell division control protein, ...
Authors:Schmidt, J.M, Bleichert, F.
Deposit date:2020-07-19
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural mechanism for replication origin binding and remodeling by a metazoan origin recognition complex and its co-loader Cdc6.
Nat Commun, 11, 2020
2NO4
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BU of 2no4 by Molmil
Crystal Structure analysis of a Dehalogenase
Descriptor: (S)-2-haloacid dehalogenase IVA, CHLORIDE ION, SULFATE ION
Authors:Schmidberger, J.W, Wilce, M.C.J.
Deposit date:2006-10-24
Release date:2007-09-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4
J.Mol.Biol., 368, 2007
2NO5
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BU of 2no5 by Molmil
Crystal Structure analysis of a Dehalogenase with intermediate complex
Descriptor: (2S)-2-CHLOROPROPANOIC ACID, (S)-2-haloacid dehalogenase IVA, CHLORIDE ION, ...
Authors:Schmidberger, J.W, Wilce, M.C.J.
Deposit date:2006-10-24
Release date:2007-09-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4
J.Mol.Biol., 368, 2007

 

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