Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 112 results

1PHO
DownloadVisualize
BU of 1pho by Molmil
CRYSTAL STRUCTURES EXPLAIN FUNCTIONAL PROPERTIES OF TWO E. COLI PORINS
Descriptor: PHOSPHOPORIN
Authors:Schirmer, T, Cowan, S.W, Jansonius, J.N.
Deposit date:1993-01-15
Release date:1993-10-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures explain functional properties of two E. coli porins.
Nature, 358, 1992
3PK2
DownloadVisualize
BU of 3pk2 by Molmil
Artificial Transfer Hydrogenases for the Enantioselective Reduction of Cyclic Imines
Descriptor: IRIDIUM (III) ION, Streptavidin, {N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(chloro)[(1,2,3,4,5-eta)-1,2,3,4,5-pentamethylcyclopentadienyl]iridium(III)
Authors:Schirmer, T, Heinisch, T.
Deposit date:2010-11-11
Release date:2011-04-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Artificial transfer hydrogenases for the enantioselective reduction of cyclic imines.
Angew.Chem.Int.Ed.Engl., 50, 2011
4OKA
DownloadVisualize
BU of 4oka by Molmil
Structural-, Kinetic- and Docking Studies of Artificial Imine Reductases Based on the Biotin-Streptavidin Technology: An Induced Lock-and-Key Hypothesis
Descriptor: IRIDIUM ION, Streptavidin, [N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamidato]iridium(III)
Authors:Schirmer, T, Heinisch, T.
Deposit date:2014-01-22
Release date:2014-11-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.505 Å)
Cite:Structural, Kinetic, and Docking Studies of Artificial Imine Reductases Based on Biotin-Streptavidin Technology: An Induced Lock-and-Key Hypothesis
J.Am.Chem.Soc., 136, 2014
2BK0
DownloadVisualize
BU of 2bk0 by Molmil
Crystal structure of the major celery allergen Api G 1
Descriptor: MAJOR ALLERGEN API G 1
Authors:Schirmer, T, Hoffmann-Sommergruber, K, Breiteneder, H, Markovic-Housley, Z.
Deposit date:2005-02-09
Release date:2005-06-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of the Major Celery Allergen Api G 1: Molecular Analysis of Cross-Reactivity.
J.Mol.Biol., 351, 2005
1MPF
DownloadVisualize
BU of 1mpf by Molmil
STRUCTURAL AND FUNCTIONAL ALTERATIONS OF A COLICIN RESISTANT MUTANT OF OMPF-PORIN FROM ESCHERICHIA COLI
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, MATRIX PORIN OUTER MEMBRANE PROTEIN F
Authors:Schirmer, T.
Deposit date:1994-08-10
Release date:1995-02-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and functional alterations of a colicin-resistant mutant of OmpF porin from Escherichia coli.
Proc.Natl.Acad.Sci.USA, 91, 1994
1MAL
DownloadVisualize
BU of 1mal by Molmil
STRUCTURAL BASIS FOR SUGAR TRANSLOCATION THROUGH MALTOPORIN CHANNELS AT 3.1 ANGSTROMS RESOLUTION
Descriptor: MALTOPORIN
Authors:Schirmer, T.
Deposit date:1994-11-24
Release date:1995-12-31
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for sugar translocation through maltoporin channels at 3.1 A resolution.
Science, 267, 1995
2WPU
DownloadVisualize
BU of 2wpu by Molmil
Chaperoned ruthenium metallodrugs that recognize telomeric DNA
Descriptor: (3AS,4S,6AR)-4-(5-((3R,4R)-3,4-DIAMINOPYRROLIDIN-1-YL)-5-OXOPENTYL)TETRAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-2(3H)-ONE-P-CYMENE-CHLORO-RUTHENIUM(III), GLYCEROL, STREPTAVIDIN, ...
Authors:Heinisch, T, Schirmer, T, Zimbron, J.M, Sardo, A, Wohlschlager, T, Gradinaru, J, Creus, M, Ward, T.R.
Deposit date:2009-08-10
Release date:2010-10-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Chemo-Genetic Optimization of DNA Recognition by Metallodrugs Using a Presenter-Protein Strategy.
Chemistry, 16, 2010
8BVB
DownloadVisualize
BU of 8bvb by Molmil
Crystal structure of the apo form of SmbA loop deletion mutant.
Descriptor: Aldo_ket_red domain-containing protein
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2022-12-02
Release date:2023-01-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mutant structure of metabolic switch protein in complex with monomeric c-di-GMP reveals a potential mechanism of protein-mediated ligand dimerization.
Sci Rep, 13, 2023
3T9O
DownloadVisualize
BU of 3t9o by Molmil
Regulatory CZB domain of DgcZ
Descriptor: Diguanylate cyclase DgcZ, ZINC ION
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2011-08-03
Release date:2012-09-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
2JK8
DownloadVisualize
BU of 2jk8 by Molmil
Type IV secretion system effector protein BepA complexed with a pyrophosphate moiety
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Palanivelu, D.V, Schirmer, T.
Deposit date:2008-08-22
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Fic Domain Catalyzed Adenylylation: Insight Provided by the Structural Analysis of the Type Iv Secretion System Effector Bepa.
Protein Sci., 20, 2011
7B0E
DownloadVisualize
BU of 7b0e by Molmil
Crystal structure of SmbA loop deletion mutant
Descriptor: 1,2-ETHANEDIOL, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CALCIUM ION, ...
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2020-11-19
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:High-resolution crystal structure of loop deletion mutant SmbA bound to a monomeric c-di-GMP
To Be Published
2WQL
DownloadVisualize
BU of 2wql by Molmil
CRYSTAL STRUCTURE OF THE MAJOR CARROT ALLERGEN DAU C 1
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, MAJOR ALLERGEN DAU C 1, ...
Authors:Markovic-Housley, Z, Basle, A, Padavattan, S, Hoffmann-Sommergruber, K, Schirmer, T.
Deposit date:2009-08-24
Release date:2009-09-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the Major Carrot Allergen Dau C 1.
Acta Crystallogr.,Sect.D, 65, 2009
1HXT
DownloadVisualize
BU of 1hxt by Molmil
OMPF PORIN MUTANT NQAAA
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, OUTER MEMBRANE PROTEIN F
Authors:Phale, P.S, Philippsen, A, Widmer, C, Phale, V.P, Rosenbusch, J.P, Schirmer, T.
Deposit date:2001-01-17
Release date:2001-06-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.
Biochemistry, 40, 2001
1HXX
DownloadVisualize
BU of 1hxx by Molmil
OMPF PORIN MUTANT Y106F
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, OUTER MEMBRANE PROTEIN F
Authors:Phale, P.S, Philippsen, A, Widmer, C, Phale, V.P, Rosenbusch, J.P, Schirmer, T.
Deposit date:2001-01-17
Release date:2001-06-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.
Biochemistry, 40, 2001
1HXU
DownloadVisualize
BU of 1hxu by Molmil
OMPF PORIN MUTANT KK
Descriptor: OUTER MEMBRANE PROTEIN F
Authors:Phale, P.S, Philippsen, A, Widmer, C, Phale, V.P, Rosenbusch, J.P, Schirmer, T.
Deposit date:2001-01-17
Release date:2001-06-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.
Biochemistry, 40, 2001
7PK5
DownloadVisualize
BU of 7pk5 by Molmil
Phosphodiesterase PdeL (EAL domain of crystals comprising full-length protein)
Descriptor: Cyclic di-GMP phosphodiesterase PdeL
Authors:Fadel, J, Schirmer, T.
Deposit date:2021-08-25
Release date:2022-09-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (4.4 Å)
Cite:Phosphodiesterase PdeL (EAL domain of crystals comprising full-length protein)
To Be Published
6ZXM
DownloadVisualize
BU of 6zxm by Molmil
Diguanylate cyclase DgcR in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, Putative GGDEF/response regulator receiver domain protein
Authors:Teixeira, R.D, Schirmer, T.
Deposit date:2020-07-29
Release date:2021-03-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Activation mechanism of a small prototypic Rec-GGDEF diguanylate cyclase.
Nat Commun, 12, 2021
6ZXC
DownloadVisualize
BU of 6zxc by Molmil
Diguanylate cyclase DgcR (I-site mutant) in activated state
Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Putative GGDEF/response regulator receiver domain protein
Authors:Teixeira, R.D, Schirmer, T.
Deposit date:2020-07-29
Release date:2021-03-31
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Activation mechanism of a small prototypic Rec-GGDEF diguanylate cyclase.
Nat Commun, 12, 2021
6ZXB
DownloadVisualize
BU of 6zxb by Molmil
Diguanylate cyclase DgcR (I-site mutant) in native state
Descriptor: 1,2-ETHANEDIOL, 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Teixeira, R.D, Schirmer, T.
Deposit date:2020-07-29
Release date:2021-03-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Activation mechanism of a small prototypic Rec-GGDEF diguanylate cyclase.
Nat Commun, 12, 2021
5NH2
DownloadVisualize
BU of 5nh2 by Molmil
Bartonella henselae BepA Fic domain in complex with its antitoxin homologue BiaA
Descriptor: Adenosine monophosphate-protein transferase, MAGNESIUM ION, Uncharacterized protein
Authors:Dietz, N, Schirmer, T.
Deposit date:2017-03-21
Release date:2018-05-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.321 Å)
Cite:Bartonella henselae BepA Fic domain in complex with its antitoxin homologue BiaA
To Be Published
1AF6
DownloadVisualize
BU of 1af6 by Molmil
MALTOPORIN SUCROSE COMPLEX
Descriptor: MAGNESIUM ION, MALTOPORIN, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Dutzler, R, Schirmer, T.
Deposit date:1997-03-21
Release date:1998-03-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Channel specificity: structural basis for sugar discrimination and differential flux rates in maltoporin.
J.Mol.Biol., 272, 1997
6TNE
DownloadVisualize
BU of 6tne by Molmil
Crystal structure of receiver domain from Hybrid Histidine Kinase CckA
Descriptor: Histidine kinase
Authors:Dubey, B.N, Bruederlin, M, Schirmer, T.
Deposit date:2019-12-06
Release date:2020-12-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of receiver domain from cyclic-di-GMP controlled hybrid histidine kinase
to be published
5IDJ
DownloadVisualize
BU of 5idj by Molmil
Bifunctional histidine kinase CckA (domains DHp-CA) in complex with ADP/Mg2+
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Histidine kinase, MAGNESIUM ION
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2016-02-24
Release date:2016-10-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Cyclic di-GMP mediates a histidine kinase/phosphatase switch by noncovalent domain cross-linking.
Sci Adv, 2, 2016
4XJY
DownloadVisualize
BU of 4xjy by Molmil
Periplasmic repressor protein YfiR
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, L(+)-TARTARIC ACID, YfiR
Authors:Kauer, S, Schirmer, T.
Deposit date:2015-01-09
Release date:2016-01-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Periplasmic repressor protein YfiR at 1.8 Angstroms resolution
To Be Published
6GS8
DownloadVisualize
BU of 6gs8 by Molmil
Crystal structure of SmbA in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, Uncharacterized protein
Authors:Dubey, B.N, Schirmer, T.
Deposit date:2018-06-13
Release date:2019-07-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Reciprocal growth control by competitive binding of nucleotide second messengers to a metabolic switch in Caulobacter crescentus
Nat Microbiol, 2021

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon