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PDB: 112 results

3ZEC
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BU of 3zec by Molmil
Fic protein from SHEWANELLA ONEIDENSIS (E73G mutant) in complex with AMPPNP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE SOFIC, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Goepfert, A, Schirmer, T.
Deposit date:2012-12-04
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
3ZC7
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BU of 3zc7 by Molmil
VbhT Fic protein from Bartonella schoenbuchensis in complex with VbhA antitoxin and ATP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT, ADENOSINE-5'-TRIPHOSPHATE, ANTITOXIN VBHA
Authors:Goepfert, A, Schirmer, T.
Deposit date:2012-11-19
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
3ZCB
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BU of 3zcb by Molmil
VbhT Fic protein from Bartonella schoenbuchensis in complex with VbhA antitoxin mutant E24G and ATP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT, ADENOSINE-5'-TRIPHOSPHATE, ANTITOXIN VBHA, ...
Authors:Goepfert, A, Schirmer, T.
Deposit date:2012-11-19
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
3SE5
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BU of 3se5 by Molmil
Fic protein from NEISSERIA MENINGITIDIS mutant delta8 in complex with AMPPNP
Descriptor: Cell filamentation protein Fic-related protein, HEXAETHYLENE GLYCOL, MAGNESIUM ION, ...
Authors:Goepfert, A, Stanger, F, Schirmer, T.
Deposit date:2011-06-10
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
Nature, 482, 2012
3SN9
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BU of 3sn9 by Molmil
Fic protein from NEISSERIA MENINGITIDIS mutant S182A/E186A in complex with AMPPNP
Descriptor: Cell filamentation protein Fic-related protein, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Goepfert, A, Stanger, F, Schirmer, T.
Deposit date:2011-06-29
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
Nature, 482, 2012
4HJF
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BU of 4hjf by Molmil
EAL domain of phosphodiesterase PdeA in complex with c-di-GMP and Ca++
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CALCIUM ION, GGDEF family protein
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Massa, C, Schirmer, T, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-10-12
Release date:2012-10-31
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of EAL domain from Caulobacter crescentus in complex with c-di-GMP and Ca
TO BE PUBLISHED
2V0N
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ACTIVATED RESPONSE REGULATOR PLED IN COMPLEX WITH C-DIGMP AND GTP- ALPHA-S
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), BERYLLIUM TRIFLUORIDE ION, CHLORIDE ION, ...
Authors:Wassmann, P, Schirmer, T.
Deposit date:2007-05-15
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structure of Bef3--Modified Response Regulator Pled: Implications for Diguanylate Cyclase Activation, Catalysis, and Feedback Inhibition
Structure, 15, 2007
2WQL
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CRYSTAL STRUCTURE OF THE MAJOR CARROT ALLERGEN DAU C 1
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, MAJOR ALLERGEN DAU C 1, ...
Authors:Markovic-Housley, Z, Basle, A, Padavattan, S, Hoffmann-Sommergruber, K, Schirmer, T.
Deposit date:2009-08-24
Release date:2009-09-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the Major Carrot Allergen Dau C 1.
Acta Crystallogr.,Sect.D, 65, 2009
2YGU
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Crystal structure of fire ant venom allergen, Sol I 2
Descriptor: HEPTANE, VENOM ALLERGEN 2
Authors:Borer, A.S, Wassmann, P, Schirmer, T, Markovic-Housley, Z.
Deposit date:2011-04-20
Release date:2011-11-23
Last modified:2012-02-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Sol I 2, a Major Allergen from Fire Ant Venom
J.Mol.Biol., 415, 2012
3S6A
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BU of 3s6a by Molmil
Fic protein from NEISSERIA MENINGITIDIS in complex with AMPPNP
Descriptor: Cell filamentation protein Fic-related protein, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Stanger, F, Goepfert, A, Schirmer, T.
Deposit date:2011-05-25
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
Nature, 482, 2012
3SHG
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BU of 3shg by Molmil
VBHT Fic protein from BARTONELLA SCHOENBUCHENSIS in complex with VBHA antitoxin
Descriptor: L(+)-TARTARIC ACID, VbhA, VbhT
Authors:Goepfert, A, Schirmer, T.
Deposit date:2011-06-16
Release date:2012-01-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
Nature, 482, 2012
2VZ4
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BU of 2vz4 by Molmil
The N-terminal domain of MerR-like protein TipAL bound to promoter DNA
Descriptor: 5'-D(*CP*TP*CP*CP*TP*CP*AP*CP*GP*TP *CP*AP*CP*GP*TP*GP*AP*GP*GP*TP*G)-3', HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TIPA
Authors:Allan, M.G, Stetefeld, J, Schirmer, T.
Deposit date:2008-07-30
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Transcriptionally Inactive Merr Domain Tipan in Complex with DNA
To be Published
3T9O
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BU of 3t9o by Molmil
Regulatory CZB domain of DgcZ
Descriptor: Diguanylate cyclase DgcZ, ZINC ION
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2011-08-03
Release date:2012-09-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
1BLE
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BU of 1ble by Molmil
PHOSPHOENOLPYRUVATE-DEPENDENT PHOSPHOTRANSFERASE SYSTEM
Descriptor: FRUCTOSE PERMEASE
Authors:Schauder, S, Schirmer, T.
Deposit date:1997-05-15
Release date:1997-09-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the IIB subunit of a fructose permease (IIBLev) from Bacillus subtilis.
J.Mol.Biol., 276, 1998
3U2E
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BU of 3u2e by Molmil
EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++
Descriptor: GGDEF family protein, MAGNESIUM ION, RNA (5'-R(P*GP*G)-3')
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Massa, C, Schirmer, T, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-10-03
Release date:2011-10-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:EAL domain from Caulobacter crescentus in complex with 5'-pGpG and Mg++
To be Published
3S83
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BU of 3s83 by Molmil
EAL domain of phosphodiesterase PdeA
Descriptor: GGDEF family protein, POTASSIUM ION
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Massa, C, Schirmer, T, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-05-27
Release date:2011-06-29
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal structure of EAL domain from Caulobacter crescentus CB15
To be Published
3TVK
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BU of 3tvk by Molmil
Diguanylate cyclase domain of DgcZ
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), D(-)-TARTARIC ACID, Diguanylate cyclase DgcZ, ...
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2011-09-20
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
1HXU
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BU of 1hxu by Molmil
OMPF PORIN MUTANT KK
Descriptor: OUTER MEMBRANE PROTEIN F
Authors:Phale, P.S, Philippsen, A, Widmer, C, Phale, V.P, Rosenbusch, J.P, Schirmer, T.
Deposit date:2001-01-17
Release date:2001-06-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.
Biochemistry, 40, 2001
1K2W
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BU of 1k2w by Molmil
Crystal structure of sorbitol dehydrogenase from R. sphaeroides
Descriptor: SORBITOL DEHYDROGENASE
Authors:Philippsen, A, Schirmer, T, Stetefeld, J.
Deposit date:2001-09-29
Release date:2003-11-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of zinc-independent sorbitol dehydrogenase from Rhodobacter sphaeroides at 2.4 A resolution.
Acta Crystallogr.,Sect.D, 61, 2005
2WB4
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BU of 2wb4 by Molmil
activated diguanylate cyclase PleD in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), BERYLLIUM TRIFLUORIDE ION, DIGUANYLATE CYCLASE, ...
Authors:Wassmann, P, Schirmer, T.
Deposit date:2009-02-20
Release date:2010-04-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Activated Pled, Identification of Dimerization and Catalysis Relevant Regulatory Mechanisms
To be Published
2VY3
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BU of 2vy3 by Molmil
Type IV secretion system effector protein BepA
Descriptor: CELL FILAMENTATION PROTEIN, CHLORIDE ION, NICKEL (II) ION
Authors:Palanivelu, D.V, Schirmer, T.
Deposit date:2008-07-17
Release date:2009-11-17
Last modified:2011-11-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Fic Domain Catalyzed Adenylylation: Insight Provided by the Structural Analysis of the Type Iv Secretion System Effector Bepa.
Protein Sci., 20, 2011
2WJR
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BU of 2wjr by Molmil
NanC porin structure in rhombohedral crystal form.
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-OCTANE, PHOSPHATE ION, ...
Authors:Wirth, C, Condemine, G, Schirmer, T, Peneff, C.M.
Deposit date:2009-05-28
Release date:2009-10-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Nanc Crystal Structure, a Model for Outer Membrane Channels of the Acidic Sugar-Specific Kdgm Porin Family.
J.Mol.Biol., 394, 2009
2VXQ
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BU of 2vxq by Molmil
Crystal structure of the major grass pollen allergen Phl p 2 in complex with its specific IgE-Fab
Descriptor: FAB, POLLEN ALLERGEN PHL P 2
Authors:Padavattan, S, Flicker, S, Schirmer, T, Madritsch, C, Randow, S, Reese, G, Vieths, S, Lupinek, C, Ebner, C, Valenta, R, Markovic-Housley, Z.
Deposit date:2008-07-08
Release date:2009-02-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-Affinity Ige Recognition of a Conformational Epitope of the Major Respiratory Allergen Phl P 2 as Revealed by X-Ray Crystallography.
J.Immunol., 182, 2009
2W27
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BU of 2w27 by Molmil
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL DOMAIN, IN COMPLEX WITH SUBSTRATE C-DI-GMP AND CALCIUM
Descriptor: CALCIUM ION, GUANOSINE-5'-MONOPHOSPHATE, YKUI PROTEIN
Authors:Padavattan, S, AndERSON, W.F, Schirmer, T.
Deposit date:2008-10-24
Release date:2009-02-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structures of Ykui and its Complex with Second Messenger C-Di-Gmp Suggests Catalytic Mechanism of Phosphodiester Bond Cleavage by Eal Domains.
J.Biol.Chem., 284, 2009
2VZA
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BU of 2vza by Molmil
Type IV secretion system effector protein BepA
Descriptor: CELL FILAMENTATION PROTEIN, SULFATE ION
Authors:Meury, M, Schirmer, T.
Deposit date:2008-07-31
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Fic Domain Catalyzed Adenylylation: Insight Provided by the Structural Analysis of the Type Iv Secretion System Effector Bepa.
Protein Sci., 20, 2011

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