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PDB: 105 results

2GN0
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Crystal structure of dimeric biodegradative threonine deaminase (TdcB) from Salmonella typhimurium at 1.7 A resolution (Triclinic form with one complete subunit built in alternate conformation)
Descriptor: SODIUM ION, Threonine dehydratase catabolic
Authors:Simanshu, D.K, Savithri, H.S, Murthy, M.R.
Deposit date:2006-04-09
Release date:2006-11-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of Salmonella typhimurium biodegradative threonine deaminase and its complex with CMP provide structural insights into ligand-induced oligomerization and enzyme activation.
J.Biol.Chem., 281, 2006
2GN2
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Crystal structure of tetrameric biodegradative threonine deaminase (TdcB) from Salmonella typhimurium in complex with CMP at 2.5A resolution (Hexagonal form)
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, SODIUM ION, Threonine dehydratase catabolic
Authors:Simanshu, D.K, Savithri, H.S, Murthy, M.R.N.
Deposit date:2006-04-09
Release date:2006-11-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of Salmonella typhimurium biodegradative threonine deaminase and its complex with CMP provide structural insights into ligand-induced oligomerization and enzyme activation.
J.Biol.Chem., 281, 2006
1VAK
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T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65
Descriptor: CALCIUM ION, coat protein
Authors:Sangita, V, Lokesh, G.L, Satheshkumer, P.S, Vijay, C.S, Saravanan, V, Savithri, H.S, Murthy, M.R.
Deposit date:2004-02-18
Release date:2004-11-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:T=1 capsid structures of Sesbania mosaic virus coat protein mutants: determinants of T=3 and T=1 capsid assembly
J.Mol.Biol., 342, 2004
1VB4
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T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36
Descriptor: CALCIUM ION, coat protein
Authors:Sangita, V, Lokesh, G.L, Satheshkumar, P.S, Vijay, C.S, Saravanan, V, Savithri, H.S, Murthy, M.R.
Deposit date:2004-02-21
Release date:2004-11-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:T=1 capsid structures of Sesbania mosaic virus coat protein mutants: determinants of T=3 and T=1 capsid assembly
J.Mol.Biol., 342, 2004
1VB2
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T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65-D146N-D149N
Descriptor: coat protein
Authors:Sangita, V, Lokesh, G.L, Satheshkumar, P.S, Vijay, C.S, Saravanan, V, Savithri, H.S, Murthy, M.R.
Deposit date:2004-02-21
Release date:2004-11-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:T=1 capsid structures of Sesbania mosaic virus coat protein mutants: determinants of T=3 and T=1 capsid assembly
J.Mol.Biol., 342, 2004
4XH5
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BU of 4xh5 by Molmil
Crystal structure of Salmonella typhimurium propionate kinase A88G mutant, in complex with AMPPNP and propionate
Descriptor: GLYCEROL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PROPANOIC ACID, ...
Authors:Murthy, A.M, Mathivanan, S, Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2015-01-04
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structures of substrate- and nucleotide-bound propionate kinase from Salmonella typhimurium: substrate specificity and phosphate-transfer mechanism
Acta Crystallogr.,Sect.D, 71, 2015
4XH4
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Crystal structure of Salmonella typhimurium propionate kinase A88V mutant, in complex with AMPPNP and propionate
Descriptor: GLYCEROL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PROPANOIC ACID, ...
Authors:Murthy, A.M.V, Mathivanan, S, Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2015-01-04
Release date:2015-08-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of substrate- and nucleotide-bound propionate kinase from Salmonella typhimurium: substrate specificity and phosphate-transfer mechanism
Acta Crystallogr.,Sect.D, 71, 2015
3R0X
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Crystal structure of Selenomethionine incorporated apo D-serine deaminase from Salmonella tyhimurium
Descriptor: 1,2-ETHANEDIOL, D-serine dehydratase, SODIUM ION, ...
Authors:Bharath, S.R, Shveta, B, Savithri, H.S, Murthy, M.R.N.
Deposit date:2011-03-09
Release date:2011-06-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal structures of open and closed forms of D-serine deaminase from Salmonella typhimurium - implications on substrate specificity and catalysis
Febs J., 2011
4XH1
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Crystal structure of Salmonella typhimurium propionate kinase in complex with AMPPNP and propionate
Descriptor: GLYCEROL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PROPANOIC ACID, ...
Authors:Murthy, A.M.V, Mathivanan, S, Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2015-01-04
Release date:2015-08-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of substrate- and nucleotide-bound propionate kinase from Salmonella typhimurium: substrate specificity and phosphate-transfer mechanism
Acta Crystallogr.,Sect.D, 71, 2015
3R0Z
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Crystal structure of apo D-serine deaminase from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, D-serine dehydratase, SULFATE ION
Authors:Bharath, S.R, Shveta, B, Savithri, H.S, Murthy, M.R.N.
Deposit date:2011-03-09
Release date:2011-06-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of open and closed forms of D-serine deaminase from Salmonella typhimurium - implications on substrate specificity and catalysis
Febs J., 2011
3SK3
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BU of 3sk3 by Molmil
Crystal structure of Salmonella typhimurium acetate kinase (AckA) with citrate bound at the dimeric interface
Descriptor: 1,2-ETHANEDIOL, Acetate kinase, CITRIC ACID
Authors:Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2011-06-22
Release date:2012-08-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and mechanistic investigations on Salmonella typhimurium acetate kinase (AckA): identification of a putative ligand binding pocket at the dimeric interface
Bmc Struct.Biol., 12, 2012
3O8J
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BU of 3o8j by Molmil
Crystal structure of 2-methylcitrate synthase (PrpC) from Salmonella typhimurium
Descriptor: 2-methylcitrate synthase, GLYCEROL
Authors:Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2010-08-03
Release date:2011-04-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Crystal structure of Salmonella typhimurium 2-methylcitrate synthase: Insights on domain movement and substrate specificity
J.Struct.Biol., 174, 2011
2HTA
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Crystal Structure of a putative mutarotase (YeaD) from Salmonella typhimurium in orthorhombic form
Descriptor: GLYCEROL, Putative enzyme related to aldose 1-epimerase, SULFATE ION
Authors:Chittori, S, Simanshu, D.K, Savithri, H.S, Murthy, M.R.N.
Deposit date:2006-07-25
Release date:2007-01-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the putative mutarotase YeaD from Salmonella typhimurium: structural comparison with galactose mutarotases.
Acta Crystallogr.,Sect.D, 63, 2007
2HTB
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BU of 2htb by Molmil
Crystal Structure of a putative mutarotase (YeaD) from Salmonella typhimurium in monoclinic form
Descriptor: Putative enzyme related to aldose 1-epimerase
Authors:Chittori, S, Simanshu, D.K, Savithri, H.S, Murthy, M.R.N.
Deposit date:2006-07-25
Release date:2007-01-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the putative mutarotase YeaD from Salmonella typhimurium: structural comparison with galactose mutarotases.
Acta Crystallogr.,Sect.D, 63, 2007
5YRX
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BU of 5yrx by Molmil
Crystal structure of a hypothetical protein Rv3716c from Mycobacterium tuberculosis
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Nucleoid-associated protein Rv3716c
Authors:Deka, G, Gopalan, A, Prabhavathi, M, Savithri, H.S, Raja, A, Murthy, M.R.N.
Deposit date:2017-11-10
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and biophysical characterization of Rv3716c, a hypothetical protein from Mycobacterium tuberculosis
Biochem. Biophys. Res. Commun., 495, 2018
5ZWB
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BU of 5zwb by Molmil
Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium in complex with ADP, PL-linked to Lys233 via a Schiff base
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Deka, G, Benazir, J.F, Kalyani, J.N, Savithri, H.S, Murthy, M.R.N.
Deposit date:2018-05-14
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and functional studies on Salmonella typhimurium pyridoxal kinase: the first structural evidence for the formation of Schiff base with the substrate.
Febs J., 286, 2019
5ZW9
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Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Deka, G, Benazir, J.F, Kalyani, J.N, Savithri, H.S, Murthy, M.R.N.
Deposit date:2018-05-14
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and functional studies on Salmonella typhimurium pyridoxal kinase: the first structural evidence for the formation of Schiff base with the substrate.
Febs J., 286, 2019
5ZWA
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BU of 5zwa by Molmil
Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium in complex with ADP, PL-linked to Lys233 via Schiff base in protomer A and the product (PLP) in protomer B
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:Deka, G, Benazir, J.F, Kalyani, J.N, Savithri, H.S, Murthy, M.R.N.
Deposit date:2018-05-14
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural and functional studies on Salmonella typhimurium pyridoxal kinase: the first structural evidence for the formation of Schiff base with the substrate.
Febs J., 286, 2019
1X3M
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Crystal structure of ADP bound Propionate kinase (TdcD) from Salmonella typhimurium
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Propionate kinase
Authors:Simanshu, D.K, Savithri, H.S, Murthy, M.R.
Deposit date:2005-05-09
Release date:2005-09-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structures of ADP and AMPPNP-bound Propionate Kinase (TdcD) from Salmonella typhimurium: Comparison with Members of Acetate and Sugar Kinase/Heat Shock Cognate 70/Actin Superfamily.
J.Mol.Biol., 352, 2005
1X35
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Recombinant T=3 capsid of a site specific mutant of SeMV CP
Descriptor: CALCIUM ION, Coat protein
Authors:Sangita, V, Lokesh, G.L, Satheshkumar, P.S, Saravanan, V, Vijay, C.S, Savithri, H.S, Murthy, M.R.
Deposit date:2005-04-29
Release date:2005-10-18
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Structural studies on recombinant T = 3 capsids of Sesbania mosaic virus coat protein mutants.
Acta Crystallogr.,Sect.D, 61, 2005
1X3N
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Crystal structure of AMPPNP bound Propionate kinase (TdcD) from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Propionate kinase
Authors:Simanshu, D.K, Savithri, H.S, Murthy, M.R.
Deposit date:2005-05-10
Release date:2005-09-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of ADP and AMPPNP-bound Propionate Kinase (TdcD) from Salmonella typhimurium: Comparison with Members of Acetate and Sugar Kinase/Heat Shock Cognate 70/Actin Superfamily.
J.Mol.Biol., 352, 2005
1X36
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BU of 1x36 by Molmil
T=1 capsid of an amino-terminal deletion mutant of SeMV CP
Descriptor: CALCIUM ION, Coat protein
Authors:Sangita, V, Satheshkumar, P.S, Savithri, H.S, Murthy, M.R.
Deposit date:2005-04-29
Release date:2005-10-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of a mutant T=1 capsid of Sesbania mosaic virus: role of water molecules in capsid architecture and integrity.
Acta Crystallogr.,Sect.D, 61, 2005
1X33
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BU of 1x33 by Molmil
T=3 recombinant capsid of SeMV CP
Descriptor: CALCIUM ION, Coat protein
Authors:Sangita, V, Lokesh, G.L, Satheshkumar, P.S, Saravanan, V, Vijay, C.S, Savithri, H.S, Murthy, M.R.
Deposit date:2005-04-29
Release date:2005-10-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural studies on recombinant T = 3 capsids of Sesbania mosaic virus coat protein mutants.
Acta Crystallogr.,Sect.D, 61, 2005
4FWR
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BU of 4fwr by Molmil
Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with CMP
Descriptor: 1,2-ETHANEDIOL, CYTIDINE-5'-MONOPHOSPHATE, Propionate kinase
Authors:Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2012-07-01
Release date:2013-06-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mechanistic features of Salmonella typhimurium propionate kinase (TdcD): insights from kinetic and crystallographic studies.
Biochim.Biophys.Acta, 1834, 2013
4FWM
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Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with ATP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, Propionate kinase
Authors:Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2012-07-01
Release date:2013-06-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Mechanistic features of Salmonella typhimurium propionate kinase (TdcD): insights from kinetic and crystallographic studies.
Biochim.Biophys.Acta, 1834, 2013

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