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PDB: 129 results

4W8A
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BU of 4w8a by Molmil
Crystal structure of XEG5B, a GH5 xyloglucan-specific beta-1,4-glucanase from ruminal metagenomic library, in the native form
Descriptor: Exo-xyloglucanase, GLYCEROL, SULFATE ION
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W85
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Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from ruminal metagenomic library, in complex with glucose
Descriptor: MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, beta-D-glucopyranose
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W84
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BU of 4w84 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from ruminal metagenomic library, in the native form
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W86
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BU of 4w86 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from ruminal metagenomic library, in complex with glucose and TRIS
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, ...
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W87
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BU of 4w87 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from metagenomic library, in complex with a xyloglucan oligosaccharide
Descriptor: MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W89
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BU of 4w89 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from metagenomic library, in complex with cellotriose
Descriptor: MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W88
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BU of 4w88 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from ruminal metagenomic library, in complex with a xyloglucan oligosaccharide and TRIS
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, ...
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W8B
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BU of 4w8b by Molmil
Crystal structure of XEG5B, a GH5 xyloglucan-specific beta-1,4-glucanase from ruminal metagenomic library, in complex with XXLG
Descriptor: Exo-xyloglucanase, GLYCEROL, SULFATE ION, ...
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W8O
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BU of 4w8o by Molmil
Structure of the luciferase-like enzyme from the nonluminescent Zophobas morio mealworm
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CHLORIDE ION, luciferase-like enzymeAMP-CoA-ligase
Authors:Santos, C.R, Prado, R.A, Viviani, V, Murakami, M.T.
Deposit date:2014-08-25
Release date:2015-10-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of the luciferase-like enzyme from the nonluminescent Zophobas morio mealworm
To Be Published
5BWF
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BU of 5bwf by Molmil
Crystal structure of the beta-glucosidase from Trichoderma harzianum
Descriptor: Beta-1,4-glucosidase, GLYCEROL, SULFATE ION
Authors:Santos, C.A, Zanphorlin, L.M, Crucello, A, Tonoli, C.C.C, Ruller, R, Souza, A.P, Murakami, M.T.
Deposit date:2015-06-07
Release date:2016-07-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the beta-glucosidase from Trichoderma harzianum
To Be Published
3H79
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BU of 3h79 by Molmil
Crystal structure of Trypanosoma cruzi thioredoxin-like hypothetical protein Q4DV70
Descriptor: THIOCYANATE ION, Thioredoxin-like protein
Authors:Santos, C.R, Fessel, M.R, Vieira, L.C, Krieger, M.A, Goldenberg, S, Guimaraes, B.G, Zanchin, N.I.T, Barbosa, J.A.R.G.
Deposit date:2009-04-24
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Trypanosoma cruzi thioredoxin-like hypothetical protein Q4DV70
TO BE PUBLISHED
3N98
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BU of 3n98 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose and additives
Descriptor: 1,4-DIETHYLENE DIOXIDE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N8T
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BU of 3n8t by Molmil
Native structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis
Descriptor: DI(HYDROXYETHYL)ETHER, TETRAETHYLENE GLYCOL, alpha-amylase, ...
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N92
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BU of 3n92 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose
Descriptor: alpha-amylase, GH57 family, beta-D-glucopyranose
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
4EKJ
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BU of 4ekj by Molmil
Crystal structure of a monomeric beta-xylosidase from Caulobacter crescentus CB15
Descriptor: Beta-xylosidase, SULFATE ION
Authors:Santos, C.R, Polo, C.C, Correa, J.M, Simao, R.C.G, Seixas, F.A.V, Murakami, M.T.
Deposit date:2012-04-09
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The accessory domain changes the accessibility and molecular topography of the catalytic interface in monomeric GH39 beta-xylosidases.
Acta Crystallogr.,Sect.D, 68, 2012
7UFR
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BU of 7ufr by Molmil
Cryo-EM Structure of Bl_Man38A at 2.7 A
Descriptor: Alpha-mannosidase, ZINC ION
Authors:Santos, C.R, Cordeiro, R.L, Domingues, M.N, Borges, A.C, de Farias, M.A, Van Heel, M, Murakami, M.T, Portugal, R.V.
Deposit date:2022-03-23
Release date:2022-11-16
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM Structure of Bl_Man38A at 2.7 A
Nat.Chem.Biol., 2022
7UFU
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BU of 7ufu by Molmil
Cryo-EM Structure of Bl_Man38A nucleophile mutant in complex with mannose at 2.7 A
Descriptor: Alpha-mannosidase, ZINC ION, alpha-D-mannopyranose
Authors:Santos, C.R, Cordeiro, R.L, Domingues, M.N, Borges, A.C, de Farias, M.A, Van Heel, M, Murakami, M.T, Portugal, R.V.
Deposit date:2022-03-23
Release date:2022-11-16
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM Structure of Bl_Man38A nucleophile mutant in complex with mannose at 2.7 A
Nat.Chem.Biol., 2022
7UFS
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BU of 7ufs by Molmil
Cryo-EM Structure of Bl_Man38B at 3.4 A
Descriptor: Alpha-mannosidase, ZINC ION
Authors:Santos, C.R, Cordeiro, R.L, Domingues, M.N, Borges, A.C, de Farias, M.A, Van Heel, M, Murakami, M.T, Portugal, R.V.
Deposit date:2022-03-23
Release date:2022-11-16
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM Structure of Bl_Man38B at 3.4 A
Nat.Chem.Biol., 2022
7UFT
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BU of 7uft by Molmil
Cryo-EM Structure of Bl_Man38C at 2.9 A
Descriptor: Alpha-mannosidase, ZINC ION
Authors:Santos, C.R, Cordeiro, R.L, Domingues, M.N, Borges, A.C, de Farias, M.A, Van Heel, M, Murakami, M.T, Portugal, R.V.
Deposit date:2022-03-23
Release date:2022-11-16
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-EM Structure of Bl_Man38C at 2.9 A
Nat.Chem.Biol., 2022
4D8Y
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BU of 4d8y by Molmil
Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in space group P212121 at pH 5.6
Descriptor: GLYCEROL, Purine nucleoside phosphorylase deoD-type, SULFATE ION
Authors:Santos, C.R, Meza, A.N, Martins, N.H, Giuseppe, P.O, Murakami, M.T.
Deposit date:2012-01-11
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases.
Plos One, 7, 2012
3NIY
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BU of 3niy by Molmil
Crystal structure of native xylanase 10B from Thermotoga petrophila RKU-1
Descriptor: ACETATE ION, Endo-1,4-beta-xylanase, SULFATE ION
Authors:Santos, C.R, Meza, A.N, Trindade, D.M, Ruller, R, Squina, F.M, Prade, R.A, Murakami, M.T.
Deposit date:2010-06-16
Release date:2011-05-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Thermal-induced conformational changes in the product release area drive the enzymatic activity of xylanases 10B: Crystal structure, conformational stability and functional characterization of the xylanase 10B from Thermotoga petrophila RKU-1.
Biochem.Biophys.Res.Commun., 403, 2010
3NJ3
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BU of 3nj3 by Molmil
Crystal structure of xylanase 10B from Thermotoga petrophila RKU-1 in complex with xylobiose
Descriptor: ACETATE ION, Endo-1,4-beta-xylanase, SULFATE ION, ...
Authors:Santos, C.R, Meza, A.N, Trindade, D.M, Ruller, R, Squina, F.M, Prade, R.A, Murakami, M.T.
Deposit date:2010-06-16
Release date:2011-05-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Thermal-induced conformational changes in the product release area drive the enzymatic activity of xylanases 10B: Crystal structure, conformational stability and functional characterization of the xylanase 10B from Thermotoga petrophila RKU-1.
Biochem.Biophys.Res.Commun., 403, 2010
4K68
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BU of 4k68 by Molmil
Structure of a novel GH10 endoxylanase retrieved from sugarcane soil metagenome
Descriptor: GH10 xylanase, GLYCEROL
Authors:Santos, C.R, Polo, C.C, Alvarez, T.M, Paixao, D.A.A, Almeida, R.F, Pereira, I.O, Squina, F.M, Murakami, M.T.
Deposit date:2013-04-15
Release date:2013-10-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Development and biotechnological application of a novel endoxylanase family GH10 identified from sugarcane soil metagenome.
Plos One, 8, 2013
6D25
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BU of 6d25 by Molmil
Crystal structure of the GH51 arabinofuranosidase from Xanthomonas axonopodis pv. citri
Descriptor: Alpha-L-arabinosidase, GLYCEROL
Authors:Santos, C.R, Morais, M.A.B, Tonoli, C.C.C, Giuseppe, P.O, Murakami, M.T.
Deposit date:2018-04-13
Release date:2019-02-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.
Biotechnol Biofuels, 11, 2018
4PMU
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BU of 4pmu by Molmil
Crystal structure of a novel reducing-end xylose-releasing exo-oligoxylanase (XynA) belonging to GH10 family (space group P1211)
Descriptor: Endo-1,4-beta-xylanase A
Authors:Santos, C.R, Martins, V.P.M, Zanphorlin, L.M, Ruller, R, Murakami, M.T.
Deposit date:2014-05-22
Release date:2014-10-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.857 Å)
Cite:Molecular mechanisms associated with xylan degradation by xanthomonas plant pathogens.
J.Biol.Chem., 289, 2014

221716

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