5GZ1
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![BU of 5gz1 by Molmil](/molmil-images/mine/5gz1) | Structure of substrate/cofactor-free D-amino acid dehydrogenase | Descriptor: | Meso-diaminopimelate D-dehydrogenase | Authors: | Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T. | Deposit date: | 2016-09-26 | Release date: | 2017-04-12 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.78 Å) | Cite: | Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase Appl. Environ. Microbiol., 83, 2017
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8KAR
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![BU of 8kar by Molmil](/molmil-images/mine/8kar) | Glutamate dehydrogenase-AKG | Descriptor: | 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, ... | Authors: | Sakuraba, H, Ohshima, T. | Deposit date: | 2023-08-03 | Release date: | 2024-08-07 | Method: | X-RAY DIFFRACTION (1.73 Å) | Cite: | Structure of glutamate dehydrogenase-AKG To be published
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8KAO
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![BU of 8kao by Molmil](/molmil-images/mine/8kao) | Glutamate dehydrogenase-69O | Descriptor: | 2-oxopentanoic acid, Glutamate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Sakuraba, H, Ohshima, T. | Deposit date: | 2023-08-03 | Release date: | 2024-08-07 | Method: | X-RAY DIFFRACTION (2.55 Å) | Cite: | Structure of glutamate dehydrogenase-69O To be published
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6K5Z
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![BU of 6k5z by Molmil](/molmil-images/mine/6k5z) | Structure of uridylyltransferase | Descriptor: | FE (III) ION, Galactose-1-phosphate uridylyltransferase, PHOSPHATE ION, ... | Authors: | Sakuraba, H, Ohshida, T, Yoneda, K, Ohshima, T. | Deposit date: | 2019-05-31 | Release date: | 2019-12-18 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.33 Å) | Cite: | Unique active site formation in a novel galactose 1-phosphate uridylyltransferase from the hyperthermophilic archaeon Pyrobaculum aerophilum. Proteins, 88, 2020
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7VNO
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![BU of 7vno by Molmil](/molmil-images/mine/7vno) | Structure of aminotransferase | Descriptor: | 1,2-ETHANEDIOL, 454aa long hypothetical 4-aminobutyrate aminotransferase, GLYCEROL, ... | Authors: | Sakuraba, H, Ohshida, T, Ohshima, T. | Deposit date: | 2021-10-11 | Release date: | 2022-03-30 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii. Int.J.Biol.Macromol., 208, 2022
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7VNT
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![BU of 7vnt by Molmil](/molmil-images/mine/7vnt) | Structure of aminotransferase-substrate complex | Descriptor: | 1,2-ETHANEDIOL, 454aa long hypothetical 4-aminobutyrate aminotransferase, GLYCEROL, ... | Authors: | Sakuraba, H, Ohshida, T, Ohshima, T. | Deposit date: | 2021-10-12 | Release date: | 2022-03-30 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.92 Å) | Cite: | Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii. Int.J.Biol.Macromol., 208, 2022
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1VCV
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![BU of 1vcv by Molmil](/molmil-images/mine/1vcv) | |
7VO1
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![BU of 7vo1 by Molmil](/molmil-images/mine/7vo1) | Structure of aminotransferase-substrate complex | Descriptor: | 454aa long hypothetical 4-aminobutyrate aminotransferase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid | Authors: | Sakuraba, H, Ohshida, T, Ohshima, T. | Deposit date: | 2021-10-12 | Release date: | 2022-03-30 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.99 Å) | Cite: | Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii. Int.J.Biol.Macromol., 208, 2022
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8HYE
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![BU of 8hye by Molmil](/molmil-images/mine/8hye) | Structure of amino acid dehydrogenase-2752 with ligand | Descriptor: | 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Alanine dehydrogenase, ... | Authors: | Sakuraba, H, Ohshima, T. | Deposit date: | 2023-01-06 | Release date: | 2023-04-05 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores. Biochim Biophys Acta Proteins Proteom, 1871, 2023
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8J1C
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8J1G
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![BU of 8j1g by Molmil](/molmil-images/mine/8j1g) | Structure of amino acid dehydrogenase in complex with NADPH | Descriptor: | 1,2-ETHANEDIOL, ARGININE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | Authors: | Sakuraba, H, Ohshima, T. | Deposit date: | 2023-04-12 | Release date: | 2023-08-16 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | First crystal structure of an NADP + -dependent l-arginine dehydrogenase belonging to the mu-crystallin family. Int.J.Biol.Macromol., 249, 2023
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5GZ6
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![BU of 5gz6 by Molmil](/molmil-images/mine/5gz6) | Structure of D-amino acid dehydrogenase in complex with NADPH and 2-keto-6-aminocapronic acid | Descriptor: | 6-azanyl-2-oxidanylidene-hexanoic acid, ACETATE ION, Meso-diaminopimelate D-dehydrogenase, ... | Authors: | Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T. | Deposit date: | 2016-09-26 | Release date: | 2017-04-12 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.74 Å) | Cite: | Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase Appl. Environ. Microbiol., 83, 2017
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5GZ3
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![BU of 5gz3 by Molmil](/molmil-images/mine/5gz3) | Structure of D-amino acid dehydrogenase in complex with NADP | Descriptor: | 1,2-ETHANEDIOL, Meso-diaminopimelate D-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T. | Deposit date: | 2016-09-26 | Release date: | 2017-04-12 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.59 Å) | Cite: | Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase Appl. Environ. Microbiol., 83, 2017
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3ICP
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![BU of 3icp by Molmil](/molmil-images/mine/3icp) | |
3KO8
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![BU of 3ko8 by Molmil](/molmil-images/mine/3ko8) | Crystal Structure of UDP-galactose 4-epimerase | Descriptor: | NAD-dependent epimerase/dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION | Authors: | Sakuraba, H, Kawai, T, Yoneda, K, Ohshima, T. | Deposit date: | 2009-11-13 | Release date: | 2010-11-17 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of UDP-galactose 4-epimerase from the hyperthermophilic archaeon Pyrobaculum calidifontis Arch.Biochem.Biophys., 512, 2011
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1WZU
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![BU of 1wzu by Molmil](/molmil-images/mine/1wzu) | Crystal structure of quinolinate synthase (nadA) | Descriptor: | D-MALATE, Quinolinate synthetase A | Authors: | Sakuraba, H. | Deposit date: | 2005-03-09 | Release date: | 2005-06-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure of the NAD Biosynthetic Enzyme Quinolinate Synthase J.Biol.Chem., 280, 2005
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5FB3
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![BU of 5fb3 by Molmil](/molmil-images/mine/5fb3) | Structure of glycerophosphate dehydrogenase in complex with NADPH | Descriptor: | Glycerol-1-phosphate dehydrogenase [NAD(P)+], NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PYROPHOSPHATE, ... | Authors: | Sakuraba, H, Hayashi, J, Yamamoto, K, Yoneda, K, Ohshima, T. | Deposit date: | 2015-12-14 | Release date: | 2016-10-12 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Unique coenzyme binding mode of hyperthermophilic archaeal sn-glycerol-1-phosphate dehydrogenase from Pyrobaculum calidifontis Proteins, 84, 2016
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8HYH
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![BU of 8hyh by Molmil](/molmil-images/mine/8hyh) | Structure of amino acid dehydrogenase3448 | Descriptor: | 1,2-ETHANEDIOL, Alanine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | Authors: | Sakuraba, H, Ohshima, T. | Deposit date: | 2023-01-06 | Release date: | 2023-04-05 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.39 Å) | Cite: | Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores. Biochim Biophys Acta Proteins Proteom, 1871, 2023
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4XB2
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![BU of 4xb2 by Molmil](/molmil-images/mine/4xb2) | Hyperthermophilic archaeal homoserine dehydrogenase mutant in complex with NADPH | Descriptor: | 319aa long hypothetical homoserine dehydrogenase, L-HOMOSERINE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | Authors: | Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T. | Deposit date: | 2014-12-16 | Release date: | 2015-07-15 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.43 Å) | Cite: | Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases. Sci Rep, 5, 2015
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4XB1
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![BU of 4xb1 by Molmil](/molmil-images/mine/4xb1) | Hyperthermophilic archaeal homoserine dehydrogenase in complex with NADPH | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 319aa long hypothetical homoserine dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | Authors: | Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T. | Deposit date: | 2014-12-16 | Release date: | 2015-07-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases. Sci Rep, 5, 2015
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5WYA
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![BU of 5wya by Molmil](/molmil-images/mine/5wya) | Structure of amino acid racemase, 2.65 A | Descriptor: | (2S,3S)-3-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanoic acid, DIMETHYL SULFOXIDE, Isoleucine 2-epimerase | Authors: | Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T. | Deposit date: | 2017-01-11 | Release date: | 2017-04-19 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri. Acta Crystallogr D Struct Biol, 73, 2017
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5WYF
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![BU of 5wyf by Molmil](/molmil-images/mine/5wyf) | Structure of amino acid racemase, 2.12 A | Descriptor: | CADMIUM ION, Isoleucine 2-epimerase, N-[O-PHOSPHONO-PYRIDOXYL]-ISOLEUCINE | Authors: | Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T. | Deposit date: | 2017-01-12 | Release date: | 2017-04-19 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.12 Å) | Cite: | Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri. Acta Crystallogr D Struct Biol, 73, 2017
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4YSN
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![BU of 4ysn by Molmil](/molmil-images/mine/4ysn) | Structure of aminoacid racemase in complex with PLP | Descriptor: | PYRIDOXAL-5'-PHOSPHATE, Putative 4-aminobutyrate aminotransferase | Authors: | Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T. | Deposit date: | 2015-03-17 | Release date: | 2016-04-20 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri. Acta Crystallogr D Struct Biol, 73, 2017
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6K3D
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![BU of 6k3d by Molmil](/molmil-images/mine/6k3d) | Structure of multicopper oxidase mutant | Descriptor: | COPPER (II) ION, CU-O-CU LINKAGE, Multicopper oxidase | Authors: | Sakuraba, H, Ohshida, T, Satomura, T, Yoneda, K, Ohshima, T. | Deposit date: | 2019-05-17 | Release date: | 2020-05-20 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.919 Å) | Cite: | Activity enhancement of multicopper oxidase from a hyperthermophile via directed evolution, and its application as the element of a high performance biocathode. J.Biotechnol., 325, 2021
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6K9Z
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![BU of 6k9z by Molmil](/molmil-images/mine/6k9z) | STRUCTURE OF URIDYLYLTRANSFERASE MUTANT | Descriptor: | ACETATE ION, FE (III) ION, Galactose-1-phosphate uridylyltransferase, ... | Authors: | Sakuraba, H, Ohshida, T, Yoneda, K, Ohshima, T. | Deposit date: | 2019-06-19 | Release date: | 2019-12-18 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.78 Å) | Cite: | Unique active site formation in a novel galactose 1-phosphate uridylyltransferase from the hyperthermophilic archaeon Pyrobaculum aerophilum. Proteins, 88, 2020
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