2DXF
| Crystal structure of nucleoside diphosphate kinase in complex with GTP analog | 分子名称: | CHLORIDE ION, Nucleoside diphosphate kinase, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | 著者 | Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2006-08-25 | 公開日 | 2007-02-25 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal structure of nucleoside diphosphate kinase in complex with GTP analog To be Published
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2DY9
| Crystal structure of nucleoside diphosphate kinase in complex with ADP | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... | 著者 | Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2006-09-08 | 公開日 | 2007-03-08 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | 主引用文献 | Crystal structure of nucleoside diphosphate kinase in complex with ADP To be Published
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8I5L
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8I8Z
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8I90
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8I94
| Structure of flavone 4'-O-glucoside 7-O-glucosyltransferase from Nemophila menziesii, complex with luteolin | 分子名称: | 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one, Glycosyltransferase, SULFATE ION | 著者 | Murayama, K, Kato-Murayama, M, Shirouzu, M. | 登録日 | 2023-02-06 | 公開日 | 2024-02-14 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (2.43 Å) | 主引用文献 | Molecular basis of ligand recognition specificity of flavone glucosyltransferases in Nemophila menziesii. Arch.Biochem.Biophys., 753, 2024
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7CD1
| Crystal structure of inhibitory Smad, Smad7 | 分子名称: | CHLORIDE ION, Mothers against decapentaplegic homolog 7, SULFATE ION | 著者 | Murayama, K, Kato-Murayama, M, Shirouzu, M. | 登録日 | 2020-06-18 | 公開日 | 2021-03-17 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.89 Å) | 主引用文献 | Structural basis for inhibitory effects of Smad7 on TGF-beta family signaling. J.Struct.Biol., 212, 2020
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2CV8
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2CXA
| Crystal structure of Leucyl/phenylalanyl-tRNA protein transferase from Escherichia coli | 分子名称: | Leucyl/phenylalanyl-tRNA-protein transferase | 著者 | Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2005-06-28 | 公開日 | 2005-12-28 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli Protein Sci., 16, 2007
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7VS9
| Crystal structure of P domain from norovirus GI.9 capsid protein in complex with Lewis x antigen. | 分子名称: | CHLORIDE ION, MAGNESIUM ION, VP1, ... | 著者 | Murayama, K, Kato-Murayama, M, Shirouzu, M. | 登録日 | 2021-10-26 | 公開日 | 2022-08-31 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.26 Å) | 主引用文献 | Lewis fucose is a key moiety for the recognition of histo-blood group antigens by GI.9 norovirus, as revealed by structural analysis. Febs Open Bio, 12, 2022
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7VS8
| Crystal structure of P domain from norovirus GI.9 capsid protein in complex with Lewis b antigen. | 分子名称: | CHLORIDE ION, MAGNESIUM ION, VP1, ... | 著者 | Murayama, K, Kato-Murayama, M, Shirouzu, M. | 登録日 | 2021-10-26 | 公開日 | 2022-08-31 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Lewis fucose is a key moiety for the recognition of histo-blood group antigens by GI.9 norovirus, as revealed by structural analysis. Febs Open Bio, 12, 2022
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7EJL
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7EJN
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7EJM
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1WEK
| Crystal structure of the conserved hypothetical protein TT1465 from Thermus thermophilus HB8 | 分子名称: | PHOSPHATE ION, hypothetical protein TT1465 | 著者 | Kukimoto-Niino, M, Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-05-25 | 公開日 | 2004-11-25 | 最終更新日 | 2014-11-12 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8 Protein Sci., 13, 2004
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1WDV
| Crystal structure of hypothetical protein APE2540 | 分子名称: | hypothetical protein APE2540 | 著者 | Murayama, K, Kato-Murayama, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-05-18 | 公開日 | 2004-11-18 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution. Acta Crystallogr.,Sect.F, 61, 2005
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5Y7Z
| Complex structure of cyclin G-associated kinase with gefitinib | 分子名称: | Cyclin-G-associated kinase, Gefitinib, NANOBODY, ... | 著者 | Ohbayashi, N, Murayama, K, Kato-Murayama, M, Shirouzu, M. | 登録日 | 2017-08-18 | 公開日 | 2018-08-29 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.804 Å) | 主引用文献 | Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib. ChemistryOpen, 7, 2018
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5Y80
| Complex structure of cyclin G-associated kinase with gefitinib | 分子名称: | Cyclin-G-associated kinase, Gefitinib, NANOBODY | 著者 | Ohbayashi, N, Murayama, K, Kato-Murayama, M, Shirouzu, M. | 登録日 | 2017-08-18 | 公開日 | 2018-08-29 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib. ChemistryOpen, 7, 2018
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1UF3
| Crystal structure of TT1561 of thermus thermophilus HB8 | 分子名称: | CALCIUM ION, hypothetical protein TT1561 | 著者 | Kato-Murayama, M, Shirouzu, M, Terada, T, Murayama, K, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-05-23 | 公開日 | 2003-11-23 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystal structure of TT1561 of thermus thermophilus HB8 To be Published
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7N86
| Crystal Structure of Human Protocadherin-24 EC1-2 Form II | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ... | 著者 | Modak, D, Gray, M.E, Sotomayor, M. | 登録日 | 2021-06-13 | 公開日 | 2021-09-01 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (3.175 Å) | 主引用文献 | Heterophilic and homophilic cadherin interactions in intestinal intermicrovillar links are species dependent. Plos Biol., 19, 2021
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4YN3
| Crystal structure of Cucumisin complex with pro-peptide | 分子名称: | CHLORIDE ION, Cucumisin, DI(HYDROXYETHYL)ETHER, ... | 著者 | Murayama, K, Kato-Murayama, M, Yokoyama, S, Arima, K, Shirouzu, M. | 登録日 | 2015-03-09 | 公開日 | 2016-03-09 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | Structural basis of cucumisin protease activity regulation by its propeptide J. Biochem., 161, 2017
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6ZJ3
| Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis | 分子名称: | 18S rRNA, 5.8S rRNA, 5S rRNA, ... | 著者 | Matzov, D, Halfon, H, Zimmerman, E, Rozenberg, H, Bashan, A, Gray, M.W, Yonath, A.E, Shalev-Benami, M. | 登録日 | 2020-06-27 | 公開日 | 2020-10-07 | 最終更新日 | 2024-04-24 | 実験手法 | ELECTRON MICROSCOPY (3.15 Å) | 主引用文献 | Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis. Nucleic Acids Res., 48, 2020
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6MYY
| Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 3 Fabs bound, sharpened map | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 426c DS-SOSIP D3, ... | 著者 | Borst, A.J, Weidle, C.E, Gray, M.D, Frenz, B, Snijder, J, Joyce, M.G, Georgiev, I.S, Stewart-Jones, G.B.E, Kwong, P.D, McGuire, A.T, DiMaio, F, Stamatatos, L, Pancera, M, Veesler, D. | 登録日 | 2018-11-02 | 公開日 | 2018-11-14 | 最終更新日 | 2020-07-29 | 実験手法 | ELECTRON MICROSCOPY (3.8 Å) | 主引用文献 | Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer and a glycosylated HIV-1 gp120 core. Elife, 7, 2018
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6MZJ
| Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 2 Fabs bound, sharpened map | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 426c DS-SOSIP D3, ... | 著者 | Borst, A.J, Weidle, C.E, Gray, M.D, Frenz, B, Snijder, J, Joyce, M.G, Georgiev, I.S, Stewart-Jones, G.B.E, Kwong, P.D, McGuire, A.T, DiMaio, F, Stamatatos, L, Pancera, M, Veesler, D. | 登録日 | 2018-11-05 | 公開日 | 2018-11-14 | 最終更新日 | 2020-07-29 | 実験手法 | ELECTRON MICROSCOPY (4.8 Å) | 主引用文献 | Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer and a glycosylated HIV-1 gp120 core. Elife, 7, 2018
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5C2K
| Crystal structure of the fusion protein linked by RhoA and the GAP domain of MgcRacGAP | 分子名称: | ALUMINUM FLUORIDE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | 著者 | Murayama, K, Kato-Murayama, M, Hosaka, T, Kitamura, T, Yokoyama, S, Shirouzu, M. | 登録日 | 2015-06-16 | 公開日 | 2016-06-22 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.42 Å) | 主引用文献 | Structural basis of G-protein target alternation of MgcRacGAP by phospholylation To Be Published
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