5OGU
 
 | | Structure of DNA-binding HU protein from micoplasma Spiroplasma melliferum | | 分子名称: | DNA-binding protein | | 著者 | Altukhov, D.A, Talyzina, A.A, Agapova, Y.K, Vlaskina, A.V, Korzhenevskiy, D.A, Bocharov, E.V, Rakitina, T.V, Timofeev, V.I. | | 登録日 | 2017-07-13 | | 公開日 | 2017-08-23 | | 最終更新日 | 2024-06-19 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold.
J.Biomol.Struct.Dyn., 36, 2018
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8P3L
 | | The structure of thiocyanate dehydrogenase mutant form with Thr 169 replaced by Ala from Thioalkalivibrio paradoxus | | 分子名称: | COPPER (II) ION, SULFATE ION, Twin-arginine translocation signal domain-containing protein | | 著者 | Varfolomeeva, L.A, Polyakov, K.M, Komolov, A.S, Rakitina, T.V, Dergousova, N.I, Dorovatovskii, P.V, Boyko, K.M, Tikhonova, T.V, Popov, V.O. | | 登録日 | 2023-05-18 | | 公開日 | 2023-05-31 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Improvement of the Diffraction Properties of Thiocyanate Dehydrogenase Crystals
Crystallography Reports, 2023
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8P3M
 | | The structure of thiocyanate dehydrogenase mutant form with Lys 281 replaced by Ala from Thioalkalivibrio paradoxus | | 分子名称: | BORIC ACID, COPPER (II) ION, SODIUM ION, ... | | 著者 | Varfolomeeva, L.A, Polyakov, K.M, Komolov, A.S, Rakitina, T.V, Dergousova, N.I, Dorovatovskii, P.V, Boyko, K.M, Tikhonova, T.V, Popov, V.O. | | 登録日 | 2023-05-18 | | 公開日 | 2023-06-07 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (2.07 Å) | | 主引用文献 | Improvement of the Diffraction Properties of Thiocyanate Dehydrogenase Crystals
Crystallography Reports, 2023
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6UWE
 | | Crystal structure of recombinant thiocyanate dehydrogenase from Thioalkalivibrio paradoxus saturated with copper | | 分子名称: | COPPER (II) ION, UNKNOWN ATOM OR ION, thiocyanate dehydrogenase | | 著者 | Shabalin, I.G, Osipov, E, Tikhonova, T.V, Rakitina, T.V, Boyko, K.M, Popov, V.O. | | 登録日 | 2019-11-05 | | 公開日 | 2019-11-27 | | 最終更新日 | 2023-10-11 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase.
Proc.Natl.Acad.Sci.USA, 117, 2020
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6ERK
 | | Crystal structure of diaminopelargonic acid aminotransferase from Psychrobacter cryohalolentis | | 分子名称: | 1,2-ETHANEDIOL, Aminotransferase, GLYCEROL, ... | | 著者 | Boyko, K.M, Nikolaeva, A.Y, Bezsudnova, E.Y, Stekhanova, T.N, Rakitina, T.V, Popov, V.O. | | 登録日 | 2017-10-18 | | 公開日 | 2018-09-26 | | 最終更新日 | 2024-01-17 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Diaminopelargonic acid transaminase from Psychrobacter cryohalolentis is active towards (S)-(-)-1-phenylethylamine, aldehydes and alpha-diketones.
Appl. Microbiol. Biotechnol., 102, 2018
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7Z79
 | | Crystal structure of aminotransferase-like protein from Variovorax paradoxus | | 分子名称: | Aminotransferase, class 4, DI(HYDROXYETHYL)ETHER, ... | | 著者 | Boyko, K.M, Matyuta, I.O, Nikolaeva, A.Y, Khrenova, M.G, Rakitina, T.V, Popov, V.O, Bezsudnova, E.Y. | | 登録日 | 2022-03-15 | | 公開日 | 2022-04-13 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | A Puzzling Protein from Variovorax paradoxus Has a PLP Fold Type IV Transaminase Structure and Binds PLP without Catalytic Lysine
Crystals, 12, 2022
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4HGX
 | | Crystal structure of xylose isomerase domain containing protein (stm4435) from salmonella typhimurium lt2 with unknown ligand | | 分子名称: | ACETATE ION, Xylose isomerase domain containing protein, ZINC ION | | 著者 | Boyko, K.M, Gorbacheva, M.A, Korzhenevskiy, D.A, Dorovatovsky, P.V, Rakitina, T.V, Lipkin, A.V, Shumilin, I.A, Minor, W, Popov, V.O. | | 登録日 | 2012-10-09 | | 公開日 | 2012-10-24 | | 最終更新日 | 2023-09-20 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Crystal structure of xylose isomerase domain containing protein (stm4435) from salmonella typhimurium lt2 with unknown ligand
To be Published
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7O9U
 | | Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus | | 分子名称: | Cytochrome c552, HEME C | | 著者 | Britikov, V.V, Britikova, E.V, Altukhov, D.A, Timofeev, V.I, Dergousova, N.I, Rakitina, T.V, Tikhonova, T.V, Usanov, S.A, Popov, V.O, Bocharov, E.V. | | 登録日 | 2021-04-17 | | 公開日 | 2021-05-05 | | 最終更新日 | 2023-06-14 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Unusual Cytochrome c 552 from Thioalkalivibrio paradoxus : Solution NMR Structure and Interaction with Thiocyanate Dehydrogenase.
Int J Mol Sci, 23, 2022
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5L8Z
 | | Structure of thermostable DNA-binding HU protein from micoplasma Spiroplasma melliferum | | 分子名称: | DNA-binding protein, SODIUM ION | | 著者 | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korzhenevskiy, D.A, Kamashev, D.E, Vanyushkina, A.A, Lipkin, A.V, Popov, V.O. | | 登録日 | 2016-06-09 | | 公開日 | 2016-06-22 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3.
Sci Rep, 6, 2016
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6Q8E
 | | Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum in PMP-form | | 分子名称: | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Branched-chain-amino-acid aminotransferase, CHLORIDE ION | | 著者 | Boyko, K.M, Bezsudnova, E.Y, Nikolaeva, A.Y, Zeifman, Y.S, Rakitina, T.V, Popov, V.O. | | 登録日 | 2018-12-14 | | 公開日 | 2019-01-02 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum.
Biochimie, 158, 2018
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8BPN
 | | The structure of thiocyanate dehydrogenase mutant form with Phe 436 replaced by Gln from Thioalkalivibrio paradoxus | | 分子名称: | COPPER (II) ION, DI(HYDROXYETHYL)ETHER, Twin-arginine translocation signal domain-containing protein | | 著者 | Varfolomeeva, L.A, Solovieva, A.Y, Shipkov, N.S, Kulikova, O.G, Dergousova, N.I, Rakitina, T.V, Boyko, K.M, Tikhonova, T.V, Popov, V.O. | | 登録日 | 2023-01-09 | | 公開日 | 2023-01-18 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | | 主引用文献 | Probing the Role of a Conserved Phenylalanine in the Active Site of Thiocyanate Dehydrogenase
Crystals, 12, 2022
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7NE5
 | | catalytically non active S532A mutant of oligopeptidase B from S. proteomaculans with modified hinge region | | 分子名称: | Oligopeptidase B, SPERMINE | | 著者 | Petrenko, D.E, Nikolaeva, A.Y, Lazarenko, V.A, Dorovatovskiy, P.V, Vlaskina, A.V, Mikhailova, A.G, Rakitina, T.V, Timofeev, V.I. | | 登録日 | 2021-02-03 | | 公開日 | 2021-03-31 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | | 主引用文献 | First Crystal Structure of Bacterial Oligopeptidase B in an Intermediate State: The Roles of the Hinge Region Modification and Spermine.
Biology (Basel), 10, 2021
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7NEA
 | | Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum (M3 mutant). | | 分子名称: | Branched-chain-amino-acid aminotransferase, CHLORIDE ION, GLYCEROL, ... | | 著者 | Boyko, K.M, Petrova, T, Nikolaeva, A.Y, Zeifman, Y.S, Rakitina, T.V, Suplatov, D.A, Popov, V.O, Bezsudnova, E.Y. | | 登録日 | 2021-02-03 | | 公開日 | 2021-07-07 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Probing the role of the residues in the active site of the transaminase from Thermobaculum terrenum.
Plos One, 16, 2021
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7NEB
 | | Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum (M4 mutant) | | 分子名称: | Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION | | 著者 | Boyko, K.M, Petrova, T, Nikolaeva, A.Y, Zeifman, Y.S, Rakitina, T.V, Suplatov, D.A, Popov, V.O, Bezsudnova, E.Y. | | 登録日 | 2021-02-03 | | 公開日 | 2021-07-07 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Probing the role of the residues in the active site of the transaminase from Thermobaculum terrenum.
Plos One, 16, 2021
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4RGZ
 | | Crystal structure of recombinant prolidase from Thermococcus sibiricus at P21221 spacegroup | | 分子名称: | PHOSPHATE ION, Xaa-Pro aminopeptidase, ZINC ION | | 著者 | Timofeev, V.I, Korgenevsky, D.A, Gorbacheva, M.A, Boyko, K.M, Slutsky, E, Rakitina, T.V, Lipkin, A.V, Popov, V.O. | | 登録日 | 2014-10-01 | | 公開日 | 2015-08-12 | | 最終更新日 | 2024-02-28 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Structure of recombinant prolidase from Thermococcus sibiricus in space group P21221.
Acta Crystallogr.,Sect.F, 71, 2015
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8ONO
 | | Modified oligopeptidase B from S. proteamaculans in intermediate conformation with 5 spermine molecule at 1.65 A resolution | | 分子名称: | Oligopeptidase B, SPERMINE | | 著者 | Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V. | | 登録日 | 2023-04-03 | | 公開日 | 2023-05-31 | | 最終更新日 | 2024-06-19 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 5 spermine molecule at 1.65 A resolution
To Be Published
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6SJI
 | | The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus mutant with His 482 replaced by Gln | | 分子名称: | COPPER (II) ION, SULFATE ION, thiocyanate dehydrogenase | | 著者 | Polyakov, K.M, Tikhonova, T.V, Rakitina, T.V, Osipov, E, Popov, V.O. | | 登録日 | 2019-08-13 | | 公開日 | 2019-09-18 | | 最終更新日 | 2024-01-24 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase.
Proc.Natl.Acad.Sci.USA, 117, 2020
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5EKC
 | | Thermostable aldehyde dehydrogenase from Pyrobaculum sp.1860 complexed with NADP+ | | 分子名称: | Aldehyde dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | 著者 | Petrova, T, Bezsudnova, E.Y, Boyko, K.M, Nikolaeva, A.Y, Rakitina, T.V, Shabalin, I.G, Popov, V.O. | | 登録日 | 2015-11-03 | | 公開日 | 2016-11-16 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (1.895 Å) | | 主引用文献 | Structure of thermostable aldehyde dehydrogenase from Pyrobaculum sp.1860 complexed with NADP+
To Be Published
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7NE7
 | | oligopeptidase B from S. proteomaculans with modified hinge region in complex with N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide | | 分子名称: | N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide, Oligopeptidase B, SPERMINE | | 著者 | Petrenko, D.E, Nikolaeva, A.Y, Lazarenko, V.A, Dorovatovskiy, P.V, Vlaskina, A.V, Mikhailova, A.G, Rakitina, T.V, Timofeev, V.I. | | 登録日 | 2021-02-03 | | 公開日 | 2021-02-17 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | The Crystal Structure of N alpha-p-tosyl-lysyl Chloromethylketone-Bound Oligopeptidase B from Serratia Proteamaculans Revealed a New Type of Inhibitor Binding
Crystals, 11, 2021
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7NE4
 | | E125A mutant of oligopeptidase B from S. proteomaculans with modified hinge region | | 分子名称: | Oligopeptidase B, SPERMINE | | 著者 | Petrenko, D.E, Nikolaeva, A.Y, Lazarenko, V.A, Dorovatovskiy, P.V, Vlaskina, A.V, Mikhailova, A.G, Rakitina, T.V, Timofeev, V.I. | | 登録日 | 2021-02-03 | | 公開日 | 2021-03-03 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (2.717 Å) | | 主引用文献 | First Crystal Structure of Bacterial Oligopeptidase B in an Intermediate State: The Roles of the Hinge Region Modification and Spermine.
Biology (Basel), 10, 2021
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4WWV
 | | Aminopeptidase APDkam598 from the archaeon Desulfurococcus kamchatkensis | | 分子名称: | Aminopeptidase from family M42 | | 著者 | Petrova, T, Boyko, K.M, Rakitina, T.V, Korzhenevskiy, D.A, Gorbacheva, M.A, Popov, V.O. | | 登録日 | 2014-11-12 | | 公開日 | 2015-03-04 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (3.006 Å) | | 主引用文献 | Structure of the dodecamer of the aminopeptidase APDkam598 from the archaeon Desulfurococcus kamchatkensis.
Acta Crystallogr.,Sect.F, 71, 2015
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7YWS
 | | Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 3 spermine molecules at 1.7 A resolution | | 分子名称: | Oligopeptidase B, SPERMINE | | 著者 | Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V. | | 登録日 | 2022-02-14 | | 公開日 | 2023-01-18 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation
Crystals, 12, 2022
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7YX7
 | | Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 1 spermine molecule at 1.72 A resolution | | 分子名称: | Oligopeptidase B, SPERMINE | | 著者 | Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V. | | 登録日 | 2022-02-15 | | 公開日 | 2023-01-18 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (1.72 Å) | | 主引用文献 | Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation
Crystals, 12, 2022
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7YWP
 | | Closed conformation of Oligopeptidase B from Serratia proteomaculans with covalently bound TCK | | 分子名称: | N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-4-methylbenzenesulfonamide, Oligopeptidase B | | 著者 | Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V. | | 登録日 | 2022-02-14 | | 公開日 | 2023-02-22 | | 最終更新日 | 2024-02-07 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Crystal Structure of Inhibitor-Bound Bacterial Oligopeptidase B in the Closed State: Similarity and Difference between Protozoan and Bacterial Enzymes.
Int J Mol Sci, 24, 2023
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7YWZ
 | | Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 4 spermine molecules at 1.75 A resolution | | 分子名称: | GLYCEROL, Oligopeptidase B, SPERMINE | | 著者 | Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V. | | 登録日 | 2022-02-15 | | 公開日 | 2023-02-22 | | 最終更新日 | 2024-02-07 | | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | | 主引用文献 | Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 4 spermine molecules at 1.75 A resolution
To Be Published
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