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PDB: 2308 results

1Z7Z
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BU of 1z7z by Molmil
Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Intercellular adhesion molecule-1, human coxsackievirus A21
Authors:Xiao, C, Bator-Kelly, C.M, Rieder, E, Chipman, P.R, Craig, A, Kuhn, R.J, Wimmer, E, Rossmann, M.G.
Deposit date:2005-03-28
Release date:2005-08-02
Last modified:2021-10-20
Method:ELECTRON MICROSCOPY (8 Å)
Cite:The crystal structure of coxsackievirus a21 and its interaction with icam-1.
Structure, 13, 2005
1ZBI
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BU of 1zbi by Molmil
Bacillus halodurans RNase H catalytic domain mutant D132N in complex with 12-mer RNA/DNA hybrid
Descriptor: 5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3', 5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3', MAGNESIUM ION, ...
Authors:Nowotny, M, Gaidamakov, S.A, Crouch, R.J, Yang, W.
Deposit date:2005-04-08
Release date:2005-07-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis.
Cell(Cambridge,Mass.), 121, 2005
1NQH
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BU of 1nqh by Molmil
OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM AND CYANOCOBALAMIN (VITAMIN B12) SUBSTRATE
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, CALCIUM ION, CYANOCOBALAMIN, ...
Authors:Chimento, D.P, Mohanty, A.K, Kadner, R.J, Wiener, M.C.
Deposit date:2003-01-21
Release date:2003-04-29
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Substrate-induced transmembrane signaling in the cobalamin transporter BtuB
Nat.Struct.Biol., 10, 2003
3DV4
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BU of 3dv4 by Molmil
Crystal structure of SAG506-01, tetragonal, crystal 1
Descriptor: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid, Ig-like protein, MAGNESIUM ION, ...
Authors:Brooks, C.L, Blackler, R.J, Gerstenbruch, S, Kosma, P, Muller-Loennies, S, Brade, H, Evans, S.V.
Deposit date:2008-07-18
Release date:2008-12-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Pseudo-symmetry and twinning in crystals of homologous antibody Fv fragments.
Acta Crystallogr.,Sect.D, 64, 2008
1ZBF
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BU of 1zbf by Molmil
Crystal structure of B. halodurans RNase H catalytic domain mutant D132N
Descriptor: SULFATE ION, ribonuclease H-related protein
Authors:Nowotny, M, Gaidamakov, S.A, Crouch, R.J, Yang, W.
Deposit date:2005-04-08
Release date:2005-07-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis.
Cell(Cambridge,Mass.), 121, 2005
7JI2
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BU of 7ji2 by Molmil
Crystal Structure of H2-Kb in complex with a OVA mutant peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, H-2 class I histocompatibility antigen, ...
Authors:Li, X, Mallis, R.J, Mizsei, R, Tan, K, Reinherz, E.L, Wang, J.
Deposit date:2020-07-22
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Pre-T cell receptors topologically sample self-ligands during thymocyte beta-selection.
Science, 371, 2021
3DGG
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BU of 3dgg by Molmil
Crystal structure of FabOX108
Descriptor: FabOX108 Heavy Chain Fragment, FabOX108 Light Chain Fragment, MAGNESIUM ION
Authors:Ren, J, Nettleship, J.E, Owens, R.J, Oxford Protein Production Facility (OPPF)
Deposit date:2008-06-13
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A pipeline for the production of antibody fragments for structural studies using transient expression in HEK 293T cells.
Protein Expr.Purif., 62, 2008
3DH9
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BU of 3dh9 by Molmil
Crystal Structure of Drosophila Thioredoxin Reductase, wild-type
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Thioredoxin reductase 1
Authors:Eckenroth, B.E, Hondal, R.J, Everse, S.J.
Deposit date:2008-06-17
Release date:2009-06-16
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of Drosophila Thioredoxin Reductase, wild-type
To be Published
6BAU
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BU of 6bau by Molmil
Crystal Structure of GltPh R397C in complex with L-Cysteine
Descriptor: CYSTEINE, Glutamate transporter homolog, SODIUM ION
Authors:Font, J, Scopelliti, A.J, Vandenberg, R.J, Boudker, O, Ryan, R.M.
Deposit date:2017-10-15
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural characterisation reveals insights into substrate recognition by the glutamine transporter ASCT2/SLC1A5.
Nat Commun, 9, 2018
4CGN
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BU of 4cgn by Molmil
Leishmania major N-myristoyltransferase in complex with a piperidinylindole inhibitor
Descriptor: 2-(4-fluorophenyl)-N-(3-piperidin-4-yl-1H-indol-5-yl)ethanamide, GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE, MAGNESIUM ION, ...
Authors:Brannigan, J.A, Roberts, S.M, Bell, A.S, Hutton, J.A, Smith, D.F, Tate, E.W, Leatherbarrow, R.J, Wilkinson, A.J.
Deposit date:2013-11-25
Release date:2014-07-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Diverse Modes of Binding in Structures of Leishmania Major N-Myristoyltransferase with Selective Inhibitors
Iucrj, 1, 2014
7N69
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BU of 7n69 by Molmil
Pre-fusion state 2 of EEEV with localized reconstruction
Descriptor: Spike glycoprotein E1, Spike glycoprotein E2
Authors:Chen, C.-L, Kuhn, R.J, Klose, T.
Deposit date:2021-06-07
Release date:2022-06-22
Last modified:2022-08-03
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Cryo-EM structures of alphavirus conformational intermediates in low pH-triggered prefusion states.
Proc.Natl.Acad.Sci.USA, 119, 2022
7N6A
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BU of 7n6a by Molmil
Pre-fusion state 1 of EEEV with localized reconstruction
Descriptor: Spike glycoprotein E1, Spike glycoprotein E2
Authors:Chen, C.-L, Kuhn, R.J, Klose, T.
Deposit date:2021-06-07
Release date:2022-06-22
Last modified:2022-08-03
Method:ELECTRON MICROSCOPY (14.3 Å)
Cite:Cryo-EM structures of alphavirus conformational intermediates in low pH-triggered prefusion states.
Proc.Natl.Acad.Sci.USA, 119, 2022
3FOO
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BU of 3foo by Molmil
A Triangular Cytochrome b562 Superstructure Mediated by Ni Coordination - Monoclinic Form
Descriptor: N-1,10-phenanthrolin-5-ylacetamide, NICKEL (II) ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Radford, R.J, Tezcan, F.A.
Deposit date:2008-12-30
Release date:2009-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A superprotein triangle driven by nickel(II) coordination: exploiting non-natural metal ligands in protein self-assembly
J.Am.Chem.Soc., 131, 2009
1YKS
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BU of 1yks by Molmil
Crystal structure of yellow fever virus NS3 helicase
Descriptor: Genome polyprotein [contains: Flavivirin protease NS3 catalytic subunit]
Authors:Wu, J, Bera, A.K, Kuhn, R.J, Smith, J.L.
Deposit date:2005-01-18
Release date:2005-08-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the flavivirus helicase: implications for catalytic activity, protein interactions, and proteolytic processing.
J.Virol., 79, 2005
6BAT
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BU of 6bat by Molmil
Crystal Structure of Wild-Type GltPh in complex with L-aspartate
Descriptor: ASPARTIC ACID, Glutamate transporter homolog, SODIUM ION
Authors:Font, J, Scopelliti, A.J, Vandenberg, R.J, Boudker, O, Ryan, R.M.
Deposit date:2017-10-15
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural characterisation reveals insights into substrate recognition by the glutamine transporter ASCT2/SLC1A5.
Nat Commun, 9, 2018
3CL2
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BU of 3cl2 by Molmil
N1 Neuraminidase N294S + Oseltamivir
Descriptor: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, Neuraminidase
Authors:Collins, P, Haire, L.F, Lin, Y.P, Liu, J, Russell, R.J, Walker, P.A, Skehel, J.J, Martin, S.R, Hay, A.J, Gamblin, S.J.
Deposit date:2008-03-18
Release date:2008-05-20
Last modified:2018-08-22
Method:X-RAY DIFFRACTION (2.538 Å)
Cite:Crystal structures of oseltamivir-resistant influenza virus neuraminidase mutants.
Nature, 453, 2008
3COB
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BU of 3cob by Molmil
Structural Dynamics of the Microtubule binding and regulatory elements in the Kinesin-like Calmodulin binding protein
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin heavy chain-like protein, MAGNESIUM ION
Authors:Vinogradova, M.V, Malanina, G.G, Reddy, V, Reddy, A.S.N, Fletterick, R.J.
Deposit date:2008-03-27
Release date:2008-06-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural dynamics of the microtubule binding and regulatory elements in the kinesin-like calmodulin binding protein.
J.Struct.Biol., 163, 2008
7O39
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BU of 7o39 by Molmil
Crystal structure of S. aureus DivIVA N terminal domain
Descriptor: DivIVA
Authors:Rao, V.A, Booth, S, Lewis, R.J.
Deposit date:2021-04-01
Release date:2021-04-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of S. aureus DivIVA N terminal domain
To Be Published
6BDY
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BU of 6bdy by Molmil
Crystal Structure of the MetH Reactivation Domain bound to Sinefungin
Descriptor: Methionine synthase, SINEFUNGIN
Authors:Fick, R.J, Vander Lee, L.P, Trievel, R.C.
Deposit date:2017-10-24
Release date:2018-05-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.512 Å)
Cite:Water-Mediated Carbon-Oxygen Hydrogen Bonding Facilitates S-Adenosylmethionine Recognition in the Reactivation Domain of Cobalamin-Dependent Methionine Synthase.
Biochemistry, 57, 2018
2JIW
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BU of 2jiw by Molmil
Bacteroides thetaiotaomicron GH84 O-GlcNAcase in complex with 2- Acetylamino-2-deoxy-1-epivalienamine
Descriptor: N-[(1S,2R,5R,6R)-2-AMINO-5,6-DIHYDROXY-4-(HYDROXYMETHYL)CYCLOHEX-3-EN-1-YL]ACETAMIDE, O-GLCNACASE BT_4395
Authors:Dennis, R.J, Davies, G.J.
Deposit date:2007-07-02
Release date:2007-08-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A 1-Acetamido Derivative of 6-Epi-Valienamine: An Inhibitor of a Diverse Group of Beta-N-Acetylglucosaminidases.
Org.Biomol.Chem., 5, 2007
1YS1
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BU of 1ys1 by Molmil
Burkholderia cepacia lipase complexed with hexylphosphonic acid (R)-2-methyl-3-phenylpropyl ester
Descriptor: CALCIUM ION, HEXYLPHOSPHONIC ACID (R)-2-METHYL-3-PHENYLPROPYL ESTER, Lipase
Authors:Mezzetti, A, Schrag, J.D, Cheong, C.S, Kazlauskas, R.J.
Deposit date:2005-02-06
Release date:2005-05-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Mirror-Image Packing in Enantiomer Discrimination Molecular Basis for the Enantioselectivity of B.cepacia Lipase toward 2-Methyl-3-Phenyl-1-Propanol.
Chem.Biol., 12, 2005
1YP6
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BU of 1yp6 by Molmil
Van der Waals Interactions Dominate Hydrophobic Association in a Protein Binding Site Occluded From Solvent Water
Descriptor: 2-ISOBUTYL-3-METHOXYPYRAZINE, CADMIUM ION, CHLORIDE ION, ...
Authors:Barratt, E, Bingham, R.J, Warner, D.J, Laughton, C.A, Phillips, S.E.V, Homans, S.W.
Deposit date:2005-01-30
Release date:2005-08-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Van der Waals Interactions Dominate Ligand-Protein Association in a Protein Binding Site Occluded from Solvent Water
J.Am.Chem.Soc., 127, 2005
7KCR
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BU of 7kcr by Molmil
Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADI30056 Fab heavy chain variable region, ADI30056 Fab light chain variable region, ...
Authors:Sevvana, M, Rogers, T.F, Miller, A.S, Long, F, Klose, T, Beutler, N, Lai, Y.C, Parren, M, Walker, L.M, Buda, G, Burton, D.R, Rossmann, M.G, Kuhn, R.J.
Deposit date:2020-10-07
Release date:2020-12-16
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural Basis of Zika Virus Specific Neutralization in Subsequent Flavivirus Infections.
Viruses, 12, 2020
2J92
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BU of 2j92 by Molmil
3C PROTEASE FROM TYPE A10(61) FOOT-AND-MOUTH DISEASE VIRUS - Crystal packing mutant (K51Q)
Descriptor: PICORNAIN 3C
Authors:Sweeney, T.R, Birtley, J.R, Leatherbarrow, R.J, Curry, S.
Deposit date:2006-11-01
Release date:2006-12-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Mutagenic Analysis of Foot-and-Mouth Disease Virus 3C Protease Reveals the Role of the {Beta}-Ribbon in Proteolysis.
J.Virol., 81, 2007
3D1Q
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BU of 3d1q by Molmil
Structure of the PTP-Like Phytase Expressed by Selenomonas Ruminantium at an Ionic Strength of 400 mM
Descriptor: CHLORIDE ION, GLYCEROL, Myo-inositol hexaphosphate phosphohydrolase
Authors:Gruninger, R.J, Selinger, L.B, Mosimann, S.C.
Deposit date:2008-05-06
Release date:2008-06-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Effect of ionic strength and oxidation on the P-loop conformation of the protein tyrosine phosphatase-like phytase, PhyAsr.
Febs J., 275, 2008

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