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PDB: 27265 results

5YUL
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BU of 5yul by Molmil
Native Structure of hSOD1 in P6322 space group
Descriptor: Dihydrogen tetrasulfide, GLYCEROL, Superoxide dismutase [Cu-Zn], ...
Authors:Manjula, R, Padmanabhan, B.
Deposit date:2017-11-22
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Assessment of ligand binding at a site relevant to SOD1 oxidation and aggregation
FEBS Lett., 592, 2018
4LVK
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BU of 4lvk by Molmil
MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Phosphate). Mn-bound crystal structure at pH 4.6
Descriptor: ACTTTAT oligonucleotide, ATAAAGTATAGTGTGpo oligonucleotide, MANGANESE (II) ION, ...
Authors:Pluta, R, Boer, D.R, Coll, M.
Deposit date:2013-07-26
Release date:2014-09-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6YTZ
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BU of 6ytz by Molmil
Crystal structure of Malus domestica Double Bond Reductase (MdDBR) in complex with NADPH
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, Double Bond Reductase, ...
Authors:Caliandro, R, Polsinelli, I, Demitri, N, Benini, S.
Deposit date:2020-04-25
Release date:2021-02-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The structural and functional characterization of Malus domestica double bond reductase MdDBR provides insights towards the identification of its substrates.
Int.J.Biol.Macromol., 171, 2021
6YU3
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BU of 6yu3 by Molmil
Crystal structure of MhsT in complex with L-phenylalanine
Descriptor: DODECYL-BETA-D-MALTOSIDE, GLYCEROL, PHENYLALANINE, ...
Authors:Focht, D, Neumann, C, Lyons, J, Eguskiza Bilbao, A, Blunck, R, Malinauskaite, L, Schwarz, I.O, Javitch, J.A, Quick, M, Nissen, P.
Deposit date:2020-04-25
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A non-helical region in transmembrane helix 6 of hydrophobic amino acid transporter MhsT mediates substrate recognition.
Embo J., 40, 2021
6YV9
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BU of 6yv9 by Molmil
Mannosyltransferase PcManGT from Pyrobaculum calidifontis in complex with GDP-Man and Mn2+
Descriptor: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, Glycosyl transferase, family 2, ...
Authors:Divne, C, Gandini, R.
Deposit date:2020-04-28
Release date:2020-07-22
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A Transmembrane Crenarchaeal Mannosyltransferase Is Involved in N-Glycan Biosynthesis and Displays an Unexpected Minimal Cellulose-Synthase-like Fold.
J.Mol.Biol., 432, 2020
6YWO
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BU of 6ywo by Molmil
CutA in complex with A3 RNA
Descriptor: CHLORIDE ION, CutA, MAGNESIUM ION, ...
Authors:Malik, D, Kobylecki, K, Krawczyk, P, Poznanski, J, Jakielaszek, A, Napiorkowska, A, Dziembowski, A, Tomecki, R, Nowotny, M.
Deposit date:2020-04-29
Release date:2020-08-05
Last modified:2020-09-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and mechanism of CutA, RNA nucleotidyl transferase with an unusual preference for cytosine.
Nucleic Acids Res., 48, 2020
6YZ1
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BU of 6yz1 by Molmil
The crystal structure of SARS-CoV-2 nsp10-nsp16 methyltransferase complex with Sinefungin
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SINEFUNGIN, ZINC ION, ...
Authors:Krafcikova, P, Silhan, J, Nencka, R, Boura, E.
Deposit date:2020-05-06
Release date:2020-05-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural analysis of the SARS-CoV-2 methyltransferase complex involved in RNA cap creation bound to sinefungin.
Nat Commun, 11, 2020
4KXW
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BU of 4kxw by Molmil
Human transketolase in covalent complex with donor ketose D-xylulose-5-phosphate, crystal 2
Descriptor: 1,2-ETHANEDIOL, D-XYLITOL-5-PHOSPHATE, MAGNESIUM ION, ...
Authors:Neumann, P, Luedtke, S, Ficner, R, Tittmann, K.
Deposit date:2013-05-28
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Sub-angstrom-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate.
Nat Chem, 5, 2013
6Z1Q
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BU of 6z1q by Molmil
MAP3K14 (NIK) in complex with DesF-3R/4076
Descriptor: DesF-3R/4076, Mitogen-activated protein kinase kinase kinase 14
Authors:Jacoby, E, van Vlijmen, H, Querolle, O, Stansfield, I, Meerpoel, L, Versele, M, Hynd, G, Attar, R.
Deposit date:2020-05-14
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:FEP+ calculations predict a stereochemical SAR switch for first-in-class indoline NIK inhibitors for multiple myeloma
Future Drug Discov, 2, 2020
6YUS
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BU of 6yus by Molmil
Capsule O-acetyltransferase of Neisseria meningitidis serogroup A H228A mutant in complex with CoA
Descriptor: 1,2-ETHANEDIOL, COENZYME A, DI(HYDROXYETHYL)ETHER, ...
Authors:Cramer, J.T, Fiebig, T, Fedorov, R, Muehlenhoff, M.
Deposit date:2020-04-27
Release date:2020-08-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and mechanistic basis of capsule O-acetylation in Neisseria meningitidis serogroup A.
Nat Commun, 11, 2020
4L4T
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BU of 4l4t by Molmil
Structure of human MAIT TCR in complex with human MR1-6-FP
Descriptor: 2-amino-4-oxo-3,4-dihydropteridine-6-carbaldehyde, Beta-2-microglobulin, MAIT T-cell receptor alpha chain, ...
Authors:Patel, O, Kjer-Nielsen, L, Le Nours, J, Eckle, S.B.G, Birkinshaw, R.W, Beddoe, T, Corbett, A.J, Liu, L, Miles, J.J, Meehan, B, Reantragoon, R, Sandoval-Romero, M.L, Sullivan, L.C, Brooks, A.G, Chen, Z, Fairlie, D.P, McCluskey, J, Rossjohn, J.
Deposit date:2013-06-09
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recognition of vitamin B metabolites by mucosal-associated invariant T cells.
Nat Commun, 4, 2013
7NUK
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BU of 7nuk by Molmil
Crystal structure of SARS CoV2 main protease in complex with EG009 (modelled using PanDDA event map)
Descriptor: 2-[2-chloranylethanoyl(propyl)amino]-~{N}-(2-methoxyphenyl)ethanamide, 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Oerlemans, R, Eris, D, Wang, M, Sharpe, M, Domling, A, Groves, M.R.
Deposit date:2021-03-12
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Combining High-Throughput Synthesis and High-Throughput Protein Crystallography for Accelerated Hit Identification.
Angew.Chem.Int.Ed.Engl., 60, 2021
7NT3
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BU of 7nt3 by Molmil
Crystal structure of SARS CoV2 main protease in complex with FSCU015
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE, ~{N}-[(1~{S})-2-(1,3-benzodioxol-5-ylmethylamino)-1-(3-hydroxyphenyl)-2-oxidanylidene-ethyl]-~{N}-propyl-prop-2-enamide
Authors:Oerlemans, R, Eris, D, Wang, M, Sharpe, M, Domling, A, Groves, M.R.
Deposit date:2021-03-08
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.325 Å)
Cite:Combining High-Throughput Synthesis and High-Throughput Protein Crystallography for Accelerated Hit Identification.
Angew.Chem.Int.Ed.Engl., 60, 2021
7OF7
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BU of 7of7 by Molmil
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).
Descriptor: 16S ribosomal RNA, 39S ribosomal protein L10, mitochondrial, ...
Authors:Hillen, H.S, Lavdovskaia, E, Nadler, F, Hanitsch, E, Linden, A, Bohnsack, K.E, Urlaub, H, Richter-Dennerlein, R.
Deposit date:2021-05-04
Release date:2021-06-23
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis of GTPase-mediated mitochondrial ribosome biogenesis and recycling.
Nat Commun, 12, 2021
5YU7
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BU of 5yu7 by Molmil
CRYSTAL STRUCTURE OF EXPORTIN-5
Descriptor: Exportin-5
Authors:Yamazawa, R, Jiko, C, Lee, S.J, Yamashita, E.
Deposit date:2017-11-20
Release date:2018-08-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:Structural Basis for Selective Binding of Export Cargoes by Exportin-5
Structure, 26, 2018
7O9S
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BU of 7o9s by Molmil
Hantaan virus Gn in complex with Fab nnHTN-Gn2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope polyprotein, Fab nnHTN-Gn2 Heavy chain, ...
Authors:Rissanen, I, Bowden, T.A, Huiskonen, J.T, Stass, R.
Deposit date:2021-04-16
Release date:2021-06-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis for a Neutralizing Antibody Response Elicited by a Recombinant Hantaan Virus Gn Immunogen.
Mbio, 12, 2021
6XUS
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BU of 6xus by Molmil
RNA dodecamer with a 6-hydrazino-2-aminopurine modified base
Descriptor: MAGNESIUM ION, RNA dodecamer with a 6-hydrazino-2-aminopurine modified base, SODIUM ION
Authors:Ennifar, E, Micura, R, Gasser, C, Brillet, K.
Deposit date:2020-01-21
Release date:2021-02-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL).
Angew.Chem.Int.Ed.Engl., 59, 2020
7UL8
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BU of 7ul8 by Molmil
[T:Au+:T--pH 11] Metal-mediated DNA base pair in tensegrity triangle
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ...
Authors:Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P.
Deposit date:2022-04-04
Release date:2023-04-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (4.22 Å)
Cite:Metal-Mediated DNA Nanotechnology in 3D: Structural Library by Templated Diffraction.
Adv Mater, 35, 2023
7NRH
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BU of 7nrh by Molmil
Hantaan virus glycoprotein (Gn) in complex with Fab fragment HTN-Gn1.
Descriptor: Envelope polyprotein, Fab fragment HTN-Gn1 Heavy chain, Fab fragment HTN-Gn1 Light chain, ...
Authors:Stass, R, Rissanen, I, Bowden, T.A, Huiskonen, J.T.
Deposit date:2021-03-03
Release date:2021-06-23
Last modified:2021-09-15
Method:ELECTRON MICROSCOPY (19 Å)
Cite:Structural Basis for a Neutralizing Antibody Response Elicited by a Recombinant Hantaan Virus Gn Immunogen.
Mbio, 12, 2021
5ZK8
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BU of 5zk8 by Molmil
Crystal structure of M2 muscarinic acetylcholine receptor bound with NMS
Descriptor: Muscarinic acetylcholine receptor M2,Redesigned apo-cytochrome b562,Muscarinic acetylcholine receptor M2, N-methyl scopolamine
Authors:Suno, R, Maeda, S, Yasuda, S, Yamashita, K, Hirata, K, Horita, S, Tawaramoto, M.S, Tsujimoto, H, Murata, T, Kinoshita, M, Yamamoto, M, Kobilka, B.K, Iwata, S, Kobayashi, T.
Deposit date:2018-03-23
Release date:2018-11-21
Last modified:2022-03-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insights into the subtype-selective antagonist binding to the M2muscarinic receptor
Nat. Chem. Biol., 14, 2018
5YZA
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BU of 5yza by Molmil
Crystal Structure of Human CRMP-2 with S522D mutation
Descriptor: Dihydropyrimidinase-related protein 2
Authors:Sumi, T, Imasaki, T, Aoki, M, Sakai, N, Nitta, E, Shirouzu, M, Nitta, R.
Deposit date:2017-12-13
Release date:2018-03-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Insights into the Altering Function of CRMP2 by Phosphorylation.
Cell Struct. Funct., 43, 2018
1NU7
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BU of 1nu7 by Molmil
Staphylocoagulase-Thrombin Complex
Descriptor: IMIDAZOLE, MERCURY (II) ION, N-(sulfanylacetyl)-D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, ...
Authors:Friedrich, R, Bode, W, Fuentes-Prior, P, Panizzi, P, Bock, P.E.
Deposit date:2003-01-31
Release date:2003-10-07
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Staphylocoagulase is a prototype for the mechanism of cofactor-induced zymogen activation
NATURE, 425, 2003
5YYB
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BU of 5yyb by Molmil
Crystal structure of Sialic acid Binding protein from Haemophilus ducreyi with Neu5Gc
Descriptor: N-glycolyl-beta-neuraminic acid, Putative ABC transporter periplasmic binding protein
Authors:Subramanian, R, Setty, T.G.
Deposit date:2017-12-08
Release date:2018-10-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.484 Å)
Cite:Molecular characterization of the interaction of sialic acid with the periplasmic binding protein fromHaemophilus ducreyi.
J. Biol. Chem., 293, 2018
5YZ5
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BU of 5yz5 by Molmil
Crystal Structure of Human CRMP-2 with T509D-T514D-S518D-S522D mutations
Descriptor: Dihydropyrimidinase-related protein 2, SULFATE ION
Authors:Imasaki, T, Sumi, T, Aoki, M, Sakai, N, Nitta, E, Shirouzu, M, Nitta, R.
Deposit date:2017-12-13
Release date:2018-03-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Insights into the Altering Function of CRMP2 by Phosphorylation.
Cell Struct. Funct., 43, 2018
6XX7
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BU of 6xx7 by Molmil
Arabidopsis thaliana Casein Kinase 2 (CK2) alpha-1 crystal in complex with ANP
Descriptor: CHLORIDE ION, Casein kinase II subunit alpha-1, MAGNESIUM ION, ...
Authors:Demulder, M, De Veylder, L, Loris, R.
Deposit date:2020-01-27
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of Arabidopsis thaliana casein kinase 2 alpha 1.
Acta Crystallogr.,Sect.F, 76, 2020

223790

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