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PDB: 109 件
4Q4U
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TvNiR in complex with sulfite, low dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2014-04-15
公開日2014-09-03
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
to be published
4Q17
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Free form of TvNiR, middle dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
著者Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2014-04-03
公開日2014-09-10
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be published
4Q0T
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BU of 4q0t by Molmil
Free form of TvNiR, low dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
著者Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2014-04-02
公開日2014-09-10
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
TO BE PUBLISHED
4Q5B
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BU of 4q5b by Molmil
TvNiR in complex with sulfite, high dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
著者Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2014-04-16
公開日2014-09-10
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be Published
4Q1O
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BU of 4q1o by Molmil
Free form of TvNiR, high dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CITRIC ACID, ...
著者Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2014-04-04
公開日2014-09-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be Published
4Q5C
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BU of 4q5c by Molmil
TvNiR in complex with sulfite, middle dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2014-04-16
公開日2014-09-03
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes
To be Published
5F75
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BU of 5f75 by Molmil
Thiocyanate dehydrogenase from Thioalkalivibrio paradoxus
分子名称: COPPER (II) ION, Thiocyanate dehydrogenase
著者Tsallagov, S.I, Polyakov, K.M, Tikhonova, T.V, Trofimov, A.A, Shabalin, I.G, Popov, A.N, Popov, V.O.
登録日2015-12-07
公開日2016-12-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Thiocyanate dehydrogenase from Thioalkalivibrio paradoxus
To Be Published
4R2X
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BU of 4r2x by Molmil
Unique conformation of uridine and asymmetry of the hexameric molecule revealed in the high-resolution structures of Shewanella oneidensis uridine phosphorylase in the free form and in complex with uridine
分子名称: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
著者Safonova, T.N, Mordkovich, N.N, Manuvera, V.A, Veiko, V.P, Popov, V.O, Polyakov, K.M.
登録日2014-08-13
公開日2014-12-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (0.93 Å)
主引用文献High-syn conformation of uridine and asymmetry of the hexameric molecule revealed in the high-resolution structures of Shewanella oneidensis MR-1 uridine phosphorylase in the free form and in complex with uridine.
Acta Crystallogr.,Sect.D, 70, 2014
4X4K
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BU of 4x4k by Molmil
Structure of laccase from Botrytis aclada with full copper content
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, Laccase, ...
著者Osipov, E.M, Polyakov, K.M, Tikhonova, T.V, Kittl, R, Shleev, S.V, Ludwig, R, Popov, V.O.
登録日2014-12-03
公開日2015-12-09
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Incorporation of copper ions into crystals of T2 copper-depleted laccase from Botrytis aclada.
Acta Crystallogr.,Sect.F, 71, 2015
4L3X
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BU of 4l3x by Molmil
Nitrite complex of TvNiR, first middle dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2013-06-07
公開日2014-06-11
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L3Z
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BU of 4l3z by Molmil
Nitrite complex of TvNiR, second middle dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2013-06-07
公開日2014-06-11
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L38
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BU of 4l38 by Molmil
Nitrite complex of TvNiR, low dose data set
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2013-06-05
公開日2014-07-16
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
4L3Y
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BU of 4l3y by Molmil
Nitrite complex of TvNiR, high dose data set (NO complex)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Lazarenko, V.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O.
登録日2013-06-07
公開日2014-06-11
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Investigation of the X-ray-induced nitrite reduction catalysed by cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens
To be Published
2VQX
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BU of 2vqx by Molmil
Precursor of Protealysin, Metalloproteinase from Serratia proteamaculans.
分子名称: METALLOPROTEINASE, ZINC ION
著者Melik-Adamyan, W.R, Kuranova, I.P, Polyakov, K.M, Demidyuk, I.V, Gromova, T.Y, Kostrov, S.V.
登録日2008-03-20
公開日2009-05-26
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.821 Å)
主引用文献Crystal Structure of the Protealysin Precursor: Insights Into Propeptide Function.
J.Biol.Chem., 285, 2010
3RR5
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BU of 3rr5 by Molmil
DNA ligase from the archaeon Thermococcus sp. 1519
分子名称: DNA ligase, MAGNESIUM ION
著者Petrova, T, Bezsudnova, E.Y, Boyko, K.M, Mardanov, A.V, Popov, V.O, Polyakov, K.M, Ravin, N.V, Shabalin, I.G, Skryabin, K.G, Stekhanova, T.N, Kovalchuk, M.V.
登録日2011-04-29
公開日2012-04-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.018 Å)
主引用文献ATP-dependent DNA ligase from Thermococcus sp. 1519 displays a new arrangement of the OB-fold domain.
Acta Crystallogr.,Sect.F, 68, 2012
3OWM
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BU of 3owm by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with hydroxylamine
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
登録日2010-09-20
公開日2011-10-26
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Binding of sulfite by the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase
To be Published
3SCE
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BU of 3sce by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with a covalent bond between the CE1 atom of Tyr303 and the CG atom of Gln360 (TvNiRb)
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Popov, V.O.
登録日2011-06-07
公開日2011-07-06
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
1M38
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BU of 1m38 by Molmil
Structure of Inorganic Pyrophosphatase
分子名称: COBALT (II) ION, INORGANIC PYROPHOSPHATASE, PHOSPHATE ION
著者Kuranova, I.P, Polyakov, K.M, Levdikov, V.M, Smirnova, E.A, Hohne, W.E, Lamzin, V.S, Meijers, R.
登録日2002-06-27
公開日2003-01-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Three-dimensional structure of Saccharomyces cerevisiae inorganic pyrophosphatase complexed with cobalt and phosphate ions
CRYSTALLOGRAPHY REPORTS, 48, 2003
3TN7
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BU of 3tn7 by Molmil
Crystal structure of short-chain alcohol dehydrogenase from hyperthermophilic archaeon Thermococcus sibiricus complexed with 5-hydroxy-NADP
分子名称: 5-hydroxy-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, GLYCEROL, Short-chain alcohol dehydrogenase
著者Boyko, K.M, Polyakov, K.M, Bezsudnova, E.Y, Stekhanova, T.N, Gumerov, V.M, Mardanov, A.V, Ravin, N.V, Skryabin, K.G, Kovalchuk, M.V, Popov, V.O.
登録日2011-09-01
公開日2012-08-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structural insight into the molecular basis of polyextremophilicity of short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus.
Biochimie, 94, 2012
2GSD
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BU of 2gsd by Molmil
NAD-dependent formate dehydrogenase from bacterium Moraxella sp.C2 in complex with NAD and azide
分子名称: AZIDE ION, NAD-dependent formate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Filippova, E.V, Polyakov, K.M, Tikhonova, T.V, Sadykhov, I.G, Shabalin, I.G, Tishkov, V.I, Popov, V.O.
登録日2006-04-26
公開日2006-05-09
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structures of the apo and holo forms of formate dehydrogenase from the bacterium Moraxella sp. C-1: towards understanding the mechanism of the closure of the interdomain cleft.
Acta Crystallogr.,Sect.D, 65, 2009
4YJK
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BU of 4yjk by Molmil
Crystal structure of C212S mutant of Shewanella oneidensis MR-1 uridine phosphorylase
分子名称: SULFATE ION, URACIL, Uridine phosphorylase
著者Safonova, T.N, Mordkovich, N.N, Manuvera, V.A, Dorovatovsky, P.V, Veiko, V.P, Popov, V.O, Polyakov, K.M.
登録日2015-03-03
公開日2015-03-11
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Concerted action of two subunits of the functional dimer of Shewanella oneidensis MR-1 uridine phosphorylase derived from a comparison of the C212S mutant and the wild-type enzyme.
Acta Crystallogr D Struct Biol, 72, 2016
3SQR
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BU of 3sqr by Molmil
Crystal structure of laccase from Botrytis aclada at 1.67 A resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, SULFATE ION, ...
著者Osipov, E.M, Polyakov, K.M, Tikhonova, T.V, Dorovatovsky, P.V, Ludwig, R, Kittl, R, Shleev, S.V, Popov, V.O.
登録日2011-07-06
公開日2012-07-11
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Effect of the L499M mutation of the ascomycetous Botrytis aclada laccase on redox potential and catalytic properties.
Acta Crystallogr.,Sect.D, 70, 2014
3V9E
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BU of 3v9e by Molmil
Structure of the L499M mutant of the laccase from B.aclada
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, GLYCEROL, ...
著者Osipov, E.M, Polyakov, K.M, Tikhonova, T.V, Dorovatovsky, P.V, Ludwig, R, Kittl, R, Shleev, S.V, Popov, V.O.
登録日2011-12-27
公開日2013-01-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Effect of the L499M mutation of the ascomycetous Botrytis aclada laccase on redox potential and catalytic properties.
Acta Crystallogr.,Sect.D, 70, 2014
3RKH
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BU of 3rkh by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with nitrite (full occupancy)
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O.
登録日2011-04-18
公開日2011-06-15
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3S7W
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BU of 3s7w by Molmil
Structure of the TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with an oxidized Gln360 in a complex with hydroxylamine
分子名称: AZIDE ION, CALCIUM ION, Eight-heme nitrite reductase, ...
著者Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Popov, V.O.
登録日2011-05-27
公開日2011-07-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structure of the TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with an oxidized Gln360 in a complex with hydroxylamine
To be Published

226707

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