Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45 件
1EQN
DownloadVisualize
BU of 1eqn by Molmil
E.COLI PRIMASE CATALYTIC CORE
分子名称: DNA PRIMASE
著者Podobnik, M, McInerney, P, O'Donnell, M, Kuriyan, J.
登録日2000-04-05
公開日2000-06-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A TOPRIM domain in the crystal structure of the catalytic core of Escherichia coli primase confirms a structural link to DNA topoisomerases.
J.Mol.Biol., 300, 2000
3IB7
DownloadVisualize
BU of 3ib7 by Molmil
Crystal structure of full length Rv0805
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者Podobnik, M, Dermol, U.
登録日2009-07-15
公開日2009-09-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability
J.Biol.Chem., 284, 2009
3IB8
DownloadVisualize
BU of 3ib8 by Molmil
Crystal structure of full length Rv0805 in complex with 5'-AMP
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
著者Podobnik, M, Dermol, U.
登録日2009-07-15
公開日2009-09-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability
J.Biol.Chem., 284, 2009
5EC5
DownloadVisualize
BU of 5ec5 by Molmil
Crystal structure of lysenin pore
分子名称: Lysenin, MERCURIBENZOIC ACID, MERCURY (II) ION
著者Podobnik, M, Savory, P, Rojko, N, Kisovec, M, Bruce, M, Jayasinghe, L, Anderluh, G.
登録日2015-10-20
公開日2016-05-18
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly.
Nat Commun, 7, 2016
1PBH
DownloadVisualize
BU of 1pbh by Molmil
CRYSTAL STRUCTURE OF HUMAN RECOMBINANT PROCATHEPSIN B AT 3.2 ANGSTROM RESOLUTION
分子名称: PROCATHEPSIN B
著者Podobnik, M, Turk, D.
登録日1997-02-14
公開日1998-02-25
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structures of human procathepsin B at 3.2 and 3.3 Angstroms resolution reveal an interaction motif between a papain-like cysteine protease and its propeptide.
FEBS Lett., 384, 1996
2PBH
DownloadVisualize
BU of 2pbh by Molmil
CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN B AT 3.3 ANGSTROM RESOLUTION
分子名称: PROCATHEPSIN B
著者Podobnik, M, Turk, D, Kuhelj, R, Turk, V.
登録日1997-02-14
公開日1998-02-25
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structures of human procathepsin B at 3.2 and 3.3 Angstroms resolution reveal an interaction motif between a papain-like cysteine protease and its propeptide.
FEBS Lett., 384, 1996
3RL3
DownloadVisualize
BU of 3rl3 by Molmil
Rat metallophosphodiesterase MPPED2
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GUANOSINE-5'-MONOPHOSPHATE, ...
著者Podobnik, M, Dermol, U.
登録日2011-04-19
公開日2011-08-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
J.Mol.Biol., 412, 2011
3RL5
DownloadVisualize
BU of 3rl5 by Molmil
Rat metallophosphodiesterase MPPED2 H67R Mutant
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Metallophosphoesterase MPPED2, ...
著者Podobnik, M, Dermol, U.
登録日2011-04-19
公開日2011-08-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.26 Å)
主引用文献Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
J.Mol.Biol., 412, 2011
3RL4
DownloadVisualize
BU of 3rl4 by Molmil
Rat metallophosphodiesterase MPPED2 G252H Mutant
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GUANOSINE-5'-MONOPHOSPHATE, ...
著者Podobnik, M, Dermol, U.
登録日2011-04-19
公開日2011-08-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
J.Mol.Biol., 412, 2011
6HXX
DownloadVisualize
BU of 6hxx by Molmil
Potato virus Y
分子名称: Coat protein, RNA (5'-R(P*UP*UP*UP*UP*U)-3')
著者Podobnik, M, Kezar, A, Novacek, J, Polak, M.
登録日2018-10-18
公開日2019-08-07
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv, 5, 2019
6ZC2
DownloadVisualize
BU of 6zc2 by Molmil
Crystal structure of RahU protein in complex with TRIS molecule
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, RahU protein
著者Podobnik, M, Anderluh, G, Lenarcic, T.
登録日2020-06-09
公開日2021-04-07
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Crystal structure of RahU, an aegerolysin protein from the human pathogen Pseudomonas aeruginosa, and its interaction with membrane ceramide phosphorylethanolamine.
Sci Rep, 11, 2021
6ZC1
DownloadVisualize
BU of 6zc1 by Molmil
Crystal structure of RahU protein from Pseudomonas aeruginosa
分子名称: RahU protein
著者Podobnik, M, Anderluh, G, Lenarcic, T.
登録日2020-06-09
公開日2021-04-07
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Crystal structure of RahU, an aegerolysin protein from the human pathogen Pseudomonas aeruginosa, and its interaction with membrane ceramide phosphorylethanolamine.
Sci Rep, 11, 2021
6HXZ
DownloadVisualize
BU of 6hxz by Molmil
Virus-like Particles based on Potato Virus Y
分子名称: Polyprotein
著者Podobnik, M, Kezar, A, Novacek, J.
登録日2018-10-18
公開日2019-08-07
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv, 5, 2019
5NNW
DownloadVisualize
BU of 5nnw by Molmil
NLPPya in complex with glucosamine
分子名称: 2-amino-2-deoxy-beta-D-glucopyranose, 25 kDa protein elicitor, MAGNESIUM ION
著者Podobnik, M, Anderluh, G, Lenarcic, T.
登録日2017-04-10
公開日2017-12-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins.
Science, 358, 2017
5NO9
DownloadVisualize
BU of 5no9 by Molmil
NLPPya in complex with mannosamine
分子名称: 2-amino-2-deoxy-alpha-D-mannopyranose, 25 kDa protein elicitor, MAGNESIUM ION
著者Podobnik, M, Anderluh, G, Lenarcic, T.
登録日2017-04-11
公開日2017-12-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins.
Science, 358, 2017
1NJG
DownloadVisualize
BU of 1njg by Molmil
Nucleotide-free form of an Isolated E. coli Clamp Loader Gamma Subunit
分子名称: DNA polymerase III subunit gamma, SULFATE ION, ZINC ION
著者Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J.
登録日2002-12-30
公開日2003-04-01
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit
Structure, 11, 2003
1NJF
DownloadVisualize
BU of 1njf by Molmil
Nucleotide bound form of an isolated E. coli clamp loader gamma subunit
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit gamma, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
著者Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J.
登録日2002-12-30
公開日2003-04-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit
Structure, 11, 2003
4ONU
DownloadVisualize
BU of 4onu by Molmil
cAMP-binding acyltransferase from Mycobacterium smegmatis, E234A mutant
分子名称: Acetyltransferase Pat, CALCIUM ION
著者Podobnik, M, Rebolj, K, Visweswariah, S.S.
登録日2014-01-29
公開日2014-04-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Allostery and Conformational Dynamics in cAMP-binding Acyltransferases.
J.Biol.Chem., 289, 2014
4OLL
DownloadVisualize
BU of 4oll by Molmil
cAMP-binding acyltransferase from Mycobacterium smegmatis
分子名称: Acetyltransferase Pat, CALCIUM ION, MERCURY (II) ION
著者Podobnik, M, Rebolj, K, Visweswariah, S.S.
登録日2014-01-24
公開日2014-04-30
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Allostery and Conformational Dynamics in cAMP-binding Acyltransferases.
J.Biol.Chem., 289, 2014
4ORF
DownloadVisualize
BU of 4orf by Molmil
cAMP-binding acyltransferase from Mycobacterium smegmatis, mutant R95K
分子名称: Acetyltransferase Pat, CHLORIDE ION
著者Podobnik, M, Rebolj, K, Visweswariah, S.S.
登録日2014-02-11
公開日2014-04-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Allostery and Conformational Dynamics in cAMP-binding Acyltransferases.
J.Biol.Chem., 289, 2014
3PBH
DownloadVisualize
BU of 3pbh by Molmil
REFINED CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN B AT 2.5 ANGSTROM RESOLUTION
分子名称: PROCATHEPSIN B
著者Podobnik, M, Turk, D, Kuhelj, R, Turk, V.
登録日1997-02-13
公開日1998-02-25
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the wild-type human procathepsin B at 2.5 A resolution reveals the native active site of a papain-like cysteine protease zymogen.
J.Mol.Biol., 271, 1997
1K3B
DownloadVisualize
BU of 1k3b by Molmil
Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to an Endopeptidase Framework Creates the Machine for Activation of Granular Serine Proteases
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, SULFATE ION, ...
著者Turk, D, Janjic, V, Stern, I, Podobnik, M, Lamba, D, Dahl, S.W, Lauritzen, C, Pedersen, J, Turk, V, Turk, B.
登録日2001-10-02
公開日2002-04-02
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure of human dipeptidyl peptidase I (cathepsin C): exclusion domain added to an endopeptidase framework creates the machine for activation of granular serine proteases.
EMBO J., 20, 2001
8CQM
DownloadVisualize
BU of 8cqm by Molmil
Broad-range phospholipase C from Listeria monocytogenes
分子名称: FE (III) ION, GLYCEROL, Phospholipase C, ...
著者Petrisic, N, Podobnik, M.
登録日2023-03-06
公開日2023-10-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for the unique molecular properties of broad-range phospholipase C from Listeria monocytogenes.
Nat Commun, 14, 2023
7PUD
DownloadVisualize
BU of 7pud by Molmil
Bryoporin - actinoporin from moss Physcomitrium patens
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Bryoporin, SULFATE ION
著者Solinc, G, Anderluh, G, Podobnik, M.
登録日2021-09-29
公開日2022-09-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Pore-forming moss protein bryoporin is structurally and mechanistically related to actinoporins from evolutionarily distant cnidarians.
J.Biol.Chem., 298, 2022
1XXI
DownloadVisualize
BU of 1xxi by Molmil
ADP Bound E. coli Clamp Loader Complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit gamma, DNA polymerase III, ...
著者Kazmirski, S.L, Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J.
登録日2004-11-05
公開日2004-12-07
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (4.1 Å)
主引用文献Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex
Proc.Natl.Acad.Sci.USA, 101, 2004

 

12>

221716

件を2024-06-26に公開中

PDB statisticsPDBj update infoContact PDBjnumon