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PDB: 126 件
7F5Y
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Crystal structure of the single-stranded dna-binding protein from Mycobacterium tuberculosis- Form III
分子名称: FORMIC ACID, Single-stranded DNA-binding protein
著者Srikalaivani, R, Paul, A, Sriram, R, Narayanan, S, Gopal, B, Vijayan, M.
登録日2021-06-23
公開日2022-05-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structural variability of Mycobacterium tuberculosis SSB and susceptibility to inhibition.
Curr.Sci., 122, 2022
7F5Z
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Crystal structure of the single-stranded dna-binding protein from Mycobacterium tuberculosis- Form III
分子名称: Single-stranded DNA-binding protein
著者Srikalaivani, R, Paul, A, Sriram, R, Narayanan, S, Gopal, B, Vijayan, M.
登録日2021-06-23
公開日2022-05-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural variability of Mycobacterium tuberculosis SSB and susceptibility to inhibition.
Curr.Sci., 122, 2022
5JFE
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Flavin-dependent thymidylate synthase with H2-dUMP
分子名称: 1,2-ETHANEDIOL, 2'-deoxy-5'-uridylic acid, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Sapra, A, Stuckey, J, Palfey, B.
登録日2016-04-19
公開日2017-04-26
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Evaluating H2-dUMP as an Intermediate in the oxidation of Flavin-dependent Thymidylate Synthase
To Be Published
5J5D
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Crystal structure of Dihydrodipicolinate Synthase from Mycobacterium tuberculosis in complex with alpha-ketopimelic acid
分子名称: 2-oxoheptanedioic acid, 4-hydroxy-tetrahydrodipicolinate synthase, SODIUM ION
著者Navratna, V, Gopal, B.
登録日2016-04-02
公開日2016-08-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Inhibition of Mycobacterium tuberculosis dihydrodipicolinate synthase by alpha-ketopimelic acid and its other structural analogues
Sci Rep, 6, 2016
8QLP
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CryoEM structure of the RNA/DNA bound SPARTA (BabAgo/TIR-APAZ) tetrameric complex
分子名称: DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*C)-3'), MAGNESIUM ION, RNA (5'-R(*AP*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3'), ...
著者Finocchio, G, Koopal, B, Potocnik, A, Heijstek, C, Jinek, M, Swarts, D.
登録日2023-09-20
公開日2024-01-31
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA.
Nucleic Acids Res., 52, 2024
4PG4
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Crystal structure of S. aureus Homoserine Dehydrogenase at pH6.0
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
著者Navratna, V, Gopal, B.
登録日2014-05-01
公開日2015-05-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the catalytic mechanism of homoserine dehydrogenase.
Acta Crystallogr.,Sect.D, 71, 2015
4PG6
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Crystal structure of S. aureus Homoserine Dehydrogenase at pH7.0
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
著者Navratna, V, Gopal, B.
登録日2014-05-01
公開日2015-05-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the catalytic mechanism of homoserine dehydrogenase.
Acta Crystallogr.,Sect.D, 71, 2015
4PG5
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Crystal structure of S. aureus Homoserine Dehydrogenase at pH6.5
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
著者Navratna, V, Gopal, B.
登録日2014-05-01
公開日2015-05-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the catalytic mechanism of homoserine dehydrogenase.
Acta Crystallogr.,Sect.D, 71, 2015
8QLO
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BU of 8qlo by Molmil
CryoEM structure of the apo SPARTA (BabAgo/TIR-APAZ) complex
分子名称: Short prokaryotic Argonaute, Toll/interleukin-1 receptor domain-containing protein
著者Finocchio, G, Koopal, B, Potocnik, A, Heijstek, C, Jinek, M, Swarts, D.
登録日2023-09-20
公開日2024-01-31
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.57 Å)
主引用文献Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA.
Nucleic Acids Res., 52, 2024
4PG8
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Crystal structure of S. aureus Homoserine Dehydrogenase at pH8.5
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
著者Navratna, V, Gopal, B.
登録日2014-05-01
公開日2015-05-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the catalytic mechanism of homoserine dehydrogenase.
Acta Crystallogr.,Sect.D, 71, 2015
3S3E
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Crystal structure of the catalytic domain of PTP10D from Drosophila melanogaster
分子名称: 1,4-BUTANEDIOL, 1-BUTANOL, ISOPROPYL ALCOHOL, ...
著者Madan, L.L, Gopal, B.
登録日2011-05-18
公開日2011-11-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Conformational basis for substrate recruitment in protein tyrosine phosphatase 10D
Biochemistry, 50, 2011
4PG7
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Crystal structure of S. aureus Homoserine Dehydrogenase at pH7.5
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Navratna, V, Gopal, B.
登録日2014-05-01
公開日2015-05-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for the catalytic mechanism of homoserine dehydrogenase.
Acta Crystallogr.,Sect.D, 71, 2015
1DOD
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BU of 1dod by Molmil
THE MOBIL FLAVIN OF 4-OH BENZOATE HYDROXYLASE: MOTION OF A PROSTHETIC GROUP REGULATES CATALYSIS
分子名称: 2,4-DIHYDROXYBENZOIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, P-HYDROXYBENZOATE HYDROXYLASE
著者Gatti, D.L, Palfey, B.A, Lah, M.S, Entsch, B, Massey, V, Ballou, D.P, Ludwig, M.L.
登録日1994-09-06
公開日1994-11-30
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The mobile flavin of 4-OH benzoate hydroxylase.
Science, 266, 1994
1DOC
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THE MOBIL FLAVIN OF 4-OH BENZOATE HYDROXYLASE: MOTION OF A PROSTHETIC GROUP REGULATES CATALYSIS
分子名称: BROMIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, P-HYDROXYBENZOATE HYDROXYLASE, ...
著者Gatti, D.L, Palfey, B.A, Lah, M.S, Entsch, B, Massey, V, Ballou, D.P, Ludwig, M.L.
登録日1994-09-06
公開日1994-11-30
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The mobile flavin of 4-OH benzoate hydroxylase.
Science, 266, 1994
1DOE
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BU of 1doe by Molmil
THE MOBIL FLAVIN OF 4-OH BENZOATE HYDROXYLASE: MOTION OF A PROSTHETIC GROUP REGULATES CATALYSIS
分子名称: 2,4-DIHYDROXYBENZOIC ACID, BROMIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Gatti, D.L, Palfey, B.A, Lah, M.S, Entsch, B, Massey, V, Ballou, D.P, Ludwig, M.L.
登録日1994-09-06
公開日1994-11-30
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The mobile flavin of 4-OH benzoate hydroxylase.
Science, 266, 1994
1DOB
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BU of 1dob by Molmil
THE MOBIL FLAVIN OF 4-OH BENZOATE HYDROXYLASE: MOTION OF A PROSTHETIC GROUP REGULATES CATALYSIS
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, P-HYDROXYBENZOATE HYDROXYLASE, P-HYDROXYBENZOIC ACID
著者Gatti, D.L, Palfey, B.A, Lah, M.S, Entsch, B, Massey, V, Ballou, D.P, Ludwig, M.L.
登録日1994-09-06
公開日1994-11-30
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The mobile flavin of 4-OH benzoate hydroxylase.
Science, 266, 1994
3W8X
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The complex structure of EncM with trifluorotriketide
分子名称: 6,6,6-trifluoro-1-phenylhexane-1,3,5-trione, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Teufel, R, Miyanaga, A, Stull, F, Michaudel, Q, Louie, G, Noel, J.P, Baran, P.S, Palfey, B, Moore, B.S.
登録日2013-03-22
公開日2013-10-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement.
Nature, 503, 2013
3H7Y
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Crystal structure of BacB, an enzyme involved in Bacilysin synthesis, in tetragonal form
分子名称: 3-PHENYLPYRUVIC ACID, Bacilysin biosynthesis protein bacB, COBALT (II) ION, ...
著者Rajavel, M, Gopal, B.
登録日2009-04-28
公開日2009-09-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Role of Bacillus subtilis BacB in the synthesis of bacilysin
J.Biol.Chem., 284, 2009
4BXI
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Crystal structure of ATP binding domain of AgrC from Staphylococcus aureus
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACCESSORY GENE REGULATOR PROTEIN C, ACETATE ION, ...
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2013-07-12
公開日2014-06-04
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Influence of the Agrc-Agra Complex in the Response Time of Staphylococcus Aureus Quorum Sensing
J.Bacteriol., 196, 2014
3VFZ
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Crystal structure of -35 promoter binding domain of SigD of Mycobacterium tuberculosis
分子名称: Probable RNA polymerase sigma-D factor
著者Jaiswal, R.K, Thakur, K.G, Gopal, B.
登録日2012-01-10
公開日2013-02-13
最終更新日2013-10-09
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of sigma-factor activity by proteolysis
Nucleic Acids Res., 41, 2013
2O8X
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Crystal structure of the "-35 element" promoter recognition domain of Mycobacterium tuberculosis SigC
分子名称: Probable RNA polymerase sigma-C factor, SULFATE ION
著者Thakur, K.G, Joshi, A.M, Gopal, B.
登録日2006-12-12
公開日2006-12-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function sigma factor sigma(C) from Mycobacterium tuberculosis.
J.Biol.Chem., 282, 2007
3W8W
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The crystal structure of EncM
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Putative FAD-dependent oxygenase EncM
著者Teufel, R, Miyanaga, A, Stull, F, Michaudel, Q, Louie, G, Noel, J.P, Baran, P.S, Palfey, B, Moore, B.S.
登録日2013-03-22
公開日2013-10-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement.
Nature, 503, 2013
3W8Z
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The complex structure of EncM with hydroxytetraketide
分子名称: (7S)-7-hydroxy-1-phenyloctane-1,3,5-trione, FLAVIN-ADENINE DINUCLEOTIDE, Putative FAD-dependent oxygenase EncM
著者Teufel, R, Miyanaga, A, Stull, F, Michaudel, Q, Louie, G, Noel, J.P, Baran, P.S, Palfey, B, Moore, B.S.
登録日2013-03-22
公開日2013-10-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement.
Nature, 503, 2013
3KHZ
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Crystal Structure of R350A mutant of Staphylococcus aureus metallopeptidase (Sapep/DapE) in the apo-form
分子名称: Putative dipeptidase SACOL1801
著者Girish, T.S, Gopal, B.
登録日2009-10-31
公開日2010-07-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of Staphylococcus aureus metallopeptidase (Sapep) reveals large domain motions between the manganese-bound and apo-states
J.Biol.Chem., 285, 2010
3S3F
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Crystal Structure of the catalytic domain of PTP10D from Drosophila melanogaster with a small molecule inhibitor Vanadate
分子名称: 1,4-BUTANEDIOL, 1-BUTANOL, ISOPROPYL ALCOHOL, ...
著者Madan, L.L, Gopal, B.
登録日2011-05-18
公開日2011-11-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Conformational basis for substrate recruitment in protein tyrosine phosphatase 10D
Biochemistry, 50, 2011

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