Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 46375 results

3F29
DownloadVisualize
BU of 3f29 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with sulfite
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2008-10-29
Release date:2008-12-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of sulfite by the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase
To be Published
2H9M
DownloadVisualize
BU of 2h9m by Molmil
WDR5 in complex with unmodified H3K4 peptide
Descriptor: H3 histone, WD-repeat protein 5
Authors:Min, J.R, Schuetz, A, Allali-Hassani, A, Martin, F, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-06-10
Release date:2006-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for molecular recognition and presentation of histone H3 By WDR5.
Embo J., 25, 2006
3FP5
DownloadVisualize
BU of 3fp5 by Molmil
Crystal structure of ACBP from Moniliophthora perniciosa
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Acyl-CoA Binding Protein, ZINC ION
Authors:Monzani, P.S, Pereira, H.M, Melo, F.A, Meirelles, F.V, Oliva, G, Cascardo, J.C.M.
Deposit date:2009-01-04
Release date:2009-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:A new topology of ACBP from Moniliophthora perniciosa.
Biochim.Biophys.Acta, 1804, 2010
4CBI
DownloadVisualize
BU of 4cbi by Molmil
Pestivirus NS3 helicase
Descriptor: SERINE PROTEASE NS3
Authors:Tortorici, M.A, Duquerroy, S, Kwok, J, Vonrhein, C, Perez, J, Lamp, B, Bricogne, G, Rumenapf, T, Vachette, P, Rey, F.A.
Deposit date:2013-10-14
Release date:2015-01-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:X-Ray Structure of the Pestivirus Ns3 Helicase and its Conformation in Solution.
J.Virol., 89, 2015
5ONQ
DownloadVisualize
BU of 5onq by Molmil
Alzheimer's Amyloid-Beta Peptide Fragment 29-40 in Complex with Cd-substituted Thermolysin
Descriptor: Amyloid-beta A4 protein, CADMIUM ION, CALCIUM ION, ...
Authors:Leite, J.P, Gales, L.
Deposit date:2017-08-04
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Alzheimer's A beta1-40peptide degradation by thermolysin: evidence of inhibition by a C-terminal A beta product.
FEBS Lett., 593, 2019
1URY
DownloadVisualize
BU of 1ury by Molmil
cytoglobin cavities
Descriptor: CYTOGLOBIN, HEXACYANOFERRATE(3-), PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:de Sanctis, D, Dewilde, S, Pesce, A, Moens, L, Ascenzi, P, Hankeln, T, Burmester, T, Bolognesi, M.
Deposit date:2003-11-12
Release date:2004-12-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Cytoglobin Cavities
Biochem.Biophys.Res.Commun., 316, 2004
4C6V
DownloadVisualize
BU of 4c6v by Molmil
Crystal structure of M. tuberculosis KasA in complex with TLM5 (Soak for 5 min)
Descriptor: (5R)-3-acetyl-4-hydroxy-5-methyl-5-[(1Z)-2-methylbuta-1,3-dien-1-yl]thiophen-2(5H)-one, 1,2-ETHANEDIOL, 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 1, ...
Authors:Schiebel, J, Kapilashrami, K, Fekete, A, Bommineni, G.R, Schaefer, C.M, Mueller, M.J, Tonge, P.J, Kisker, C.
Deposit date:2013-09-19
Release date:2013-10-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis for the Recognition of Mycolic Acid Precursors by Kasa, a Condensing Enzyme and Drug Target from Mycobacterium Tuberculosis
J.Biol.Chem., 288, 2013
3F7K
DownloadVisualize
BU of 3f7k by Molmil
X-ray Crystal Structure of an Alvinella pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex
Descriptor: COPPER (I) ION, COPPER (II) ION, Copper,Zinc Superoxide Dismutase, ...
Authors:Shin, D.S, DiDonato, M, Barondeau, D.P, Getzoff, E.D, Tainer, J.A.
Deposit date:2008-11-09
Release date:2009-02-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis.
J.Mol.Biol., 385, 2009
4C3Z
DownloadVisualize
BU of 4c3z by Molmil
Nucleotide-free crystal structure of nucleotide-binding domain 1 from human MRP1 supports a general-base catalysis mechanism for ATP hydrolysis.
Descriptor: MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, SULFATE ION
Authors:Chaptal, V, Gueguen-Chaignon, V, Magnard, S, Falson, P, Di Pietro, A, Baubichon-Cortay, H.
Deposit date:2013-08-28
Release date:2014-09-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Nucleotide-Free Crystal Structure of Nucleotide-Binding Domain 1 from Human Abcc1 Supports a 'General-Base Catalysis' Mechanism for ATP Hydrolysis.
Biochem.Pharm., 3, 2014
3F8F
DownloadVisualize
BU of 3f8f by Molmil
Crystal structure of multidrug binding transcriptional regulator LmrR complexed with Daunomycin
Descriptor: DAUNOMYCIN, Transcriptional regulator, PadR-like family
Authors:Madoori, P.K, Agustiandari, H, Driessen, A.J.M, Thunnissen, A.-M.W.H.
Deposit date:2008-11-12
Release date:2008-12-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the transcriptional regulator LmrR and its mechanism of multidrug recognition.
Embo J., 28, 2009
1UMR
DownloadVisualize
BU of 1umr by Molmil
Crystal structure of the platelet activator convulxin, a disulfide linked a4b4 cyclic tetramer from the venom of Crotalus durissus terrificus
Descriptor: CONVULXIN ALPHA, CONVULXIN BETA
Authors:Murakami, M.T, Zela, S.P, Gava, L.M, Michelan-Duarte, S, Cintra, A.C.O, Arni, R.K.
Deposit date:2003-08-28
Release date:2003-11-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of the Platelet Activator Convulxin, a Disulfide Linked A4B4 Cyclic Tetramer from the Venom of Crotalus Durissus Terrificus
Biochem.Biophys.Res.Commun., 310, 2003
2GVP
DownloadVisualize
BU of 2gvp by Molmil
Solution structure of Human apo Sco1
Descriptor: SCO1 protein homolog, mitochondrial
Authors:Banci, L, Bertini, I, Calderone, V, Ciofi-Baffoni, S, Mangani, S, Paulmaa, P, Martinelli, M, Wang, S, Structural Proteomics in Europe (SPINE)
Deposit date:2006-05-03
Release date:2006-06-06
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A hint for the function of human Sco1 from different structures.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2GNQ
DownloadVisualize
BU of 2gnq by Molmil
Structure of wdr5
Descriptor: CHLORIDE ION, WD-repeat protein 5
Authors:Min, J, Schuetz, A, Allali-Hassani, A, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-04-10
Release date:2006-06-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for molecular recognition and presentation of histone H3 By WDR5.
Embo J., 25, 2006
1UND
DownloadVisualize
BU of 1und by Molmil
Solution structure of the human advillin C-terminal headpiece subdomain
Descriptor: ADVILLIN
Authors:Vermeulen, W, Van Troys, M, Vanhaesebrouck, P, Verschueren, M, Fant, F, Ampe, C, Martins, J, Borremans, F.
Deposit date:2003-09-09
Release date:2004-07-15
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Solution Structures of the C-Terminal Headpiece Subdomains of Human Villin and Advillin, Evaluation of Headpiece F-Actin-Binding Requirements
Protein Sci., 13, 2004
4CBN
DownloadVisualize
BU of 4cbn by Molmil
Crystal structure of Complement Factor D mutant R202A after conventional refinement
Descriptor: COMPLEMENT FACTOR D, GLYCEROL
Authors:Forneris, F, Burnley, B.T, Gros, P.
Deposit date:2013-10-15
Release date:2013-12-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ensemble Refinement Shows Conformational Flexibility in Crystal Structures of Human Complement Factor D
Acta Crystallogr.,Sect.D, 70, 2014
4CAY
DownloadVisualize
BU of 4cay by Molmil
Crystal structure of a human Anp32e-H2A.Z-H2B complex
Descriptor: ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 FAMILY MEMBER E, HISTONE H2A.Z, HISTONE H2B TYPE 1-J
Authors:Obri, A, Ouararhni, K, Papin, C, Diebold, M.-L, Padmanabhan, K, Marek, M, Stoll, I, Roy, L, Reilly, P.T, Mak, T.W, Dimitrov, S, Romier, C, Hamiche, A.
Deposit date:2013-10-09
Release date:2014-01-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Anp32E is a Histone Chaperone that Removes H2A.Z from Chromatin
Nature, 648, 2014
4CBQ
DownloadVisualize
BU of 4cbq by Molmil
Crystal structure of the thioredoxin reductase from Entamoeba histolytica with auranofin Au(I) bound to Cys286
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, GOLD ION, ...
Authors:Parsonage, D, Kells, P.M, Hirata, K, Debnath, A, Poole, L.B, McKerrow, J.H, Reed, S.L, Podust, L.M.
Deposit date:2013-10-16
Release date:2014-11-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:X-Ray Structures of Thioredoxin and Thioredoxin Reductase from Entamoeba Histolytica and Prevailing Hypothesis of the Mechanism of Auranofin Action.
J.Struct.Biol., 194, 2016
4BVV
DownloadVisualize
BU of 4bvv by Molmil
Identification of small molecule inhibitors selective for apo(a) kringles KIV-7, KIV-10 and KV.
Descriptor: 1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIPERAZIN-1-YL-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID, APOLIPOPROTEIN(A), SULFATE ION
Authors:Sandmark, J, Althage, M, Andersson, G.M.K, Antonsson, T, Blaho, S, Bodin, C, Bostrom, J, Chen, Y, Dahlen, A, Eriksson, P.O, Evertsson, E, Fex, T, Fjellstrom, O, Gustafsson, D, Hallberg, C, Hicks, R, Jarkvist, E, Johansson, C, Kalies, I, Kang, D, Svalstedt Karlsson, B, Kartberg, F, Legnehed, A, Lindqvist, A.M, Martinsson, S.A, Moberg, A, Petersson, A.U, Ridderstrom, M, Thelin, A, Tigerstrom, A, Vinblad, J, Xu, B, Knecht, W.
Deposit date:2013-06-28
Release date:2014-07-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Small Molecules Used to Decipher the Pathophysiological Roles of the Kringle Domains Kiv-7, - 10 and Kv of Apolipoprotein(A)
To be Published
4BW7
DownloadVisualize
BU of 4bw7 by Molmil
Calmodulin in complex with strontium
Descriptor: CALMODULIN, STRONTIUM ION
Authors:Kursula, P.
Deposit date:2013-06-30
Release date:2014-01-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystallographic Snapshots of Initial Steps in the Collapse of the Calmodulin Central Helix
Acta Crystallogr.,Sect.D, 70, 2014
2GYV
DownloadVisualize
BU of 2gyv by Molmil
Crystal structure of Mus musculus Acetylcholinesterase in complex with Ortho-7
Descriptor: 1,7-HEPTYLENE-BIS-N,N'-SYN-2-PYRIDINIUMALDOXIME, 2-acetamido-2-deoxy-beta-D-glucopyranose, 3,6,9,12,15-PENTAOXAHEPTADECANE, ...
Authors:Pang, Y.P, Boman, M, Artursson, E, Akfur, C, Lundberg, S.
Deposit date:2006-05-10
Release date:2006-08-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of acetylcholinesterase in complex with HI-6, Ortho-7 and obidoxime: Structural basis for differences in the ability to reactivate tabun conjugates.
Biochem.Pharm., 72, 2006
4BVW
DownloadVisualize
BU of 4bvw by Molmil
Identification of small molecule inhibitors selective for apo(a) kringles KIV-7, KIV-10 and KV.
Descriptor: 1,2,3,4-tetrahydroisoquinoline-6-carboxylic acid, 1,2-ETHANEDIOL, APOLIPOPROTEIN(A), ...
Authors:Sandmark, J, Althage, M, Andersson, G.M.K, Antonsson, T, Blaho, S, Bodin, C, Bostrom, J, Chen, Y, Dahlen, A, Eriksson, P.O, Evertsson, E, Fex, T, Fjellstrom, O, Gustafsson, D, Hallberg, C, Hicks, R, Jarkvist, E, Johansson, C, Kalies, I, Kang, D, Svalstedt Karlsson, B, Kartberg, F, Legnehed, A, Lindqvist, A.M, Martinsson, S.A, Moberg, A, Petersson, A.U, Ridderstrom, M, Thelin, A, Tigerstrom, A, Vinblad, J, Xu, B, Knecht, W.
Deposit date:2013-06-28
Release date:2014-07-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Small Molecules Used to Decipher the Pathophysiological Roles of the Kringle Domains Kiv-7, - 10 and Kv of Apolipoprotein(A)
To be Published
1UZJ
DownloadVisualize
BU of 1uzj by Molmil
Integrin binding cbEGF22-TB4-cbEGF33 fragment of human fibrillin-1, holo form.
Descriptor: CALCIUM ION, FIBRILLIN-1
Authors:Lee, S.S.J, Knott, V, Harlos, K, Handford, P.A, Stuart, D.I.
Deposit date:2004-03-12
Release date:2004-04-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of the Integrin Binding Fragment from Fibrillin-1 Gives New Insights Into Microfibril Organization
Structure, 12, 2004
2L44
DownloadVisualize
BU of 2l44 by Molmil
C-terminal zinc knuckle of the HIVNCp7
Descriptor: C-terminal Zinc Knucle of the HIV-NCP7, ZINC ION
Authors:Quintal, S.M.O, Viegas, A.J.M, Cabrita, E.J, Farrell, N.P, Erhardt, S.
Deposit date:2010-10-01
Release date:2011-10-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Platinated DNA affects zinc finger conformation. Interaction of a platinated single-stranded oligonucleotide and the C-terminal zinc finger of nucleocapsid protein HIVNCp7.
Biochemistry, 51, 2012
1UR1
DownloadVisualize
BU of 1ur1 by Molmil
Xylanase Xyn10B mutant (E262S) from Cellvibrio mixtus in complex with arabinofuranose alpha-1,3 linked to xylobiose
Descriptor: CHLORIDE ION, ENDOXYLANASE, MAGNESIUM ION, ...
Authors:Pell, G, Taylor, E.J, Gloster, T.M, Turkenburg, J.P, Fontes, C.M.G.A, Ferreira, L.M.A, Davies, G.J, Gilbert, H.J.
Deposit date:2003-10-24
Release date:2003-12-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:The Mechanisms by which Family 10 Glycoside Hydrolases Bind Decorated Substrates
J.Biol.Chem., 279, 2004
8SG8
DownloadVisualize
BU of 8sg8 by Molmil
CCT G beta 5 complex closed state 1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Guanine nucleotide-binding protein subunit beta-5, ...
Authors:Wang, S, Sass, M, Willardson, B.M, Shen, P.S.
Deposit date:2023-04-11
Release date:2023-10-25
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Visualizing the chaperone-mediated folding trajectory of the G protein beta 5 beta-propeller.
Mol.Cell, 83, 2023

226262

건을2024-10-16부터공개중

PDB statisticsPDBj update infoContact PDBjnumon