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PDB: 54 results

6M6W
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Crystal structure the toxin-antitoxin MntA-HpeT mutant-Y104A
Descriptor: Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-03-16
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.611 Å)
Cite:Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
6M6V
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BU of 6m6v by Molmil
Crystal structure the toxin-antitoxin MntA-HepT
Descriptor: RNA (5'-R(P*AP*AP*A)-3'), Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-03-16
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
7BU0
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BU of 7bu0 by Molmil
Crystal structure of a OTU deubiquitinase in complex with Ub-PA
Descriptor: Polyubiquitin-B, Uncharacterized protein, prop-2-en-1-amine
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-04-03
Release date:2020-11-18
Last modified:2023-04-05
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes.
Elife, 9, 2020
7BXO
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BU of 7bxo by Molmil
Crystal structure of the toxin-antitoxin with AMP-PNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Toxin-antitoxin system antidote Mnt family, ...
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-04-20
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
6L00
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BU of 6l00 by Molmil
Crystal structure of the cell-wall binding domain (CBD) of endolysin LysIME-EF1
Descriptor: Lysin
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2019-09-25
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and functional insights into a novel two-component endolysin encoded by a single gene in Enterococcus faecalis phage.
Plos Pathog., 16, 2020
6M6U
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BU of 6m6u by Molmil
Crystal structure the toxin-antitoxin MntA-HpeT mutant-D39ED41E
Descriptor: Toxin-antitoxin system antitoxin MntA family, Toxin-antitoxin system toxin HepN family
Authors:Ouyang, S.Y, Zhen, X.K.
Deposit date:2020-03-16
Release date:2020-09-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.349 Å)
Cite:Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
7XVG
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BU of 7xvg by Molmil
Cryo-EM structure of binary complex of plant NLR Sr35 and effector AvrSr35
Descriptor: AvrSr35, Sr35
Authors:Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
Deposit date:2022-05-23
Release date:2022-09-28
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7XX2
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BU of 7xx2 by Molmil
Cryo-EM structure of Sr35 resistosome induced by AvrSr35 R381A
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AvrSr35, CNL9
Authors:Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
Deposit date:2022-05-28
Release date:2022-11-02
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
8I3Q
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BU of 8i3q by Molmil
Cryo-EM structure of Cas12g-sgRNA binary complex
Descriptor: Cas12g, RNA (139-MER), ZINC ION
Authors:Ouyang, S.Y, Liu, M.X, Li, Z.K.
Deposit date:2023-01-17
Release date:2023-09-06
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural transitions upon guide RNA binding and their importance in Cas12g-mediated RNA cleavage.
Plos Genet., 19, 2023
7WCF
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BU of 7wcf by Molmil
Crystal structure of the kinase with AMP-PNP
Descriptor: HipA_C domain-containing protein, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Ouyang, S.Y, Zhen, X.
Deposit date:2021-12-20
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3636 Å)
Cite:Molecular mechanism of toxin neutralization in the HipBST toxin-antitoxin system of Legionella pneumophila.
Nat Commun, 13, 2022
7XDS
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BU of 7xds by Molmil
Crystal structure of wheat stem rust effector AvrSr35
Descriptor: AvrSr35
Authors:Ouyang, S.Y, Zhao, Y.B.
Deposit date:2022-03-28
Release date:2022-09-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7XE0
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BU of 7xe0 by Molmil
Cryo-EM structure of plant NLR Sr35 resistosome
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AvrSr35, Sr35
Authors:Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
Deposit date:2022-03-29
Release date:2022-09-28
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7CNB
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BU of 7cnb by Molmil
Crystal structure of Gp16 C-terminal domain from Bacillus virus phi29
Descriptor: DNA packaging protein
Authors:Ouyang, S.Y, Saeed, A.F.U.H.
Deposit date:2020-07-30
Release date:2021-03-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structural Insights into gp16 ATPase in the Bacteriophage φ29 DNA Packaging Motor.
Biochemistry, 60, 2021
6IM4
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BU of 6im4 by Molmil
Structural basis of AimP signaling molecule recognition by AimR in Spbeta group of bacteriophages
Descriptor: AimR transcriptional regulator, GLY-MET-PRO-ARG-GLY-ALA
Authors:Ouyang, S.Y.
Deposit date:2018-10-22
Release date:2019-01-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural basis of AimP signaling molecule recognition by AimR in Spbeta group of bacteriophages.
Protein Cell, 10, 2019
6JKY
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BU of 6jky by Molmil
Crystal structure of MvcA-UBE2N-Ub complex from Legionella pneumophila
Descriptor: MvcA, Ub, Ubiquitin-conjugating enzyme E2 N
Authors:Ouyang, S.Y, Guan, H.
Deposit date:2019-03-03
Release date:2019-12-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.454 Å)
Cite:Legionella pneumophila regulates the activity of UBE2N by deamidase-mediated deubiquitination.
Embo J., 39, 2020
6K4R
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BU of 6k4r by Molmil
Crystal structure of SidJ-CaM-AMP ternary complex at 3.11 A
Descriptor: ADENOSINE MONOPHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
Authors:Ouyang, S.Y.
Deposit date:2019-05-26
Release date:2019-07-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.109 Å)
Cite:Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature, 572, 2019
6IST
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BU of 6ist by Molmil
Crystal structure of a wild type endolysin LysIME-EF1
Descriptor: CALCIUM ION, Lysin
Authors:Ouyang, S.Y.
Deposit date:2018-11-19
Release date:2019-11-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and functional insights into a novel two-component endolysin encoded by a single gene in Enterococcus faecalis phage.
Plos Pathog., 16, 2020
6K4K
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BU of 6k4k by Molmil
Crystal structure of SidJ-CaM binary complex at 2.71 A
Descriptor: CALCIUM ION, Calmodulin-1, SidJ
Authors:Ouyang, S.Y.
Deposit date:2019-05-24
Release date:2019-07-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.715 Å)
Cite:Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature, 572, 2019
6K4L
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BU of 6k4l by Molmil
Crystal structure of Se-labelled SidJ complex with CaM at 2.95 A
Descriptor: CALCIUM ION, CHLORIDE ION, Calmodulin-1, ...
Authors:Ouyang, S.Y.
Deposit date:2019-05-24
Release date:2019-07-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.949 Å)
Cite:Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature, 572, 2019
7XPN
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BU of 7xpn by Molmil
Structure of the Spring Viraemia of Carp Virus Nucleoprotein
Descriptor: Nucleoprotein
Authors:Wang, Z.X, Liu, B, Zhang, Y.A, Ouyang, S.Y.
Deposit date:2022-05-04
Release date:2023-05-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.98 Å)
Cite:Structure of the Spring Viraemia of Carp Virus Ribonucleoprotein Complex Reveals Its Assembly Mechanism and Application in Antiviral Drug Screening.
J.Virol., 97, 2023
9J4L
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BU of 9j4l by Molmil
Crystal structure of GH9l Inulin fructotransferases (IFTase)
Descriptor: DFA-III-forming inulin fructotransferase
Authors:Chen, G, Wang, Z.X, Yang, Y.Q, Li, Y.G, Zhang, T, Ouyang, S.Y, Zhang, L, Chen, Y, Ruan, X.L, Miao, M.
Deposit date:2024-08-09
Release date:2024-09-04
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Elucidation of the mechanism underlying the sequential catalysis of inulin by fructotransferase.
Int.J.Biol.Macromol., 277, 2024
9J4I
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BU of 9j4i by Molmil
Crystal structure of GH9l Inulin fructotransferases (IFTase) in compex with fruetosyl nystose (GF4)
Descriptor: DFA-III-forming inulin fructotransferase, beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-[alpha-D-glucopyranose-(1-2)]beta-D-fructofuranose, beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-[alpha-D-glucopyranose-(1-2)]beta-D-fructofuranose
Authors:Chen, G, Wang, Z.X, Yang, Y.Q, Li, Y.G, Zhang, T, Ouyang, S.Y, Zhang, L, Chen, Y, Ruan, X.L, Miao, M.
Deposit date:2024-08-09
Release date:2024-09-04
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Elucidation of the mechanism underlying the sequential catalysis of inulin by fructotransferase.
Int.J.Biol.Macromol., 277, 2024
9J4J
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BU of 9j4j by Molmil
Crystal structure of GH9l Inulin fructotransferases(IFTase)incomplex with nystose(F3)
Descriptor: DFA-III-forming inulin fructotransferase, beta-D-fructofuranose, beta-D-fructofuranose-(1-1)-beta-D-fructofuranose, ...
Authors:Chen, G, Wang, Z.X, Yang, Y.Q, Li, Y.G, Zhang, T, Ouyang, S.Y, Zhang, L, Chen, Y, Ruan, X.L, Miao, M.
Deposit date:2024-08-09
Release date:2024-09-04
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (2.803 Å)
Cite:Elucidation of the mechanism underlying the sequential catalysis of inulin by fructotransferase.
Int.J.Biol.Macromol., 277, 2024
9J4K
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BU of 9j4k by Molmil
Crystal structure of GH9l Inulinfructotransferases (IFTase) in complex with GF2
Descriptor: DFA-III-forming inulin fructotransferase, beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Chen, G, Wang, Z.X, Yang, Y.Q, Li, Y.G, Zhang, T, Ouyang, S.Y, Zhang, L, Chen, Y, Ruan, X.L, Miao, M.
Deposit date:2024-08-09
Release date:2024-09-04
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Elucidation of the mechanism underlying the sequential catalysis of inulin by fructotransferase.
Int.J.Biol.Macromol., 277, 2024
7YG3
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BU of 7yg3 by Molmil
Crystal structure of HLA-B*13:01
Descriptor: ARG-GLN-ASP-ILE-LEU-ASP-LEU-TRP-ILE, Beta-2-microglobulin, MHC class I antigen
Authors:Wang, H.S, Ouyang, S.Y.
Deposit date:2022-07-11
Release date:2023-07-26
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Functional and structural characteristics of HLA-B*13:01-mediated specific T cells reaction in dapsone-induced drug hypersensitivity.
J.Biomed.Sci., 29, 2022

 

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