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PDB: 56 件
3GNE
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BU of 3gne by Molmil
Crystal structure of alginate lyase vAL-1 from Chlorella virus
分子名称: CITRATE ANION, GLYCEROL, VAL-1
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-03-17
公開日2009-10-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
2YZ0
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BU of 2yz0 by Molmil
Solution Structure of RWD/GI domain of Saccharomyces cerevisiae GCN2
分子名称: Serine/threonine-protein kinase GCN2
著者Ogura, K, Torikai, S, Kumeta, H, Inagaki, F.
登録日2007-05-02
公開日2008-05-06
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of RWD/GI domain of Saccharomyces cerevisiae GCN2
to be published
3IM0
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BU of 3im0 by Molmil
Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0)
分子名称: VAL-1, beta-D-glucopyranuronic acid
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-08-08
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
1K1Z
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BU of 1k1z by Molmil
Solution structure of N-terminal SH3 domain mutant(P33G) of murine Vav
分子名称: vav
著者Ogura, K, Nagata, K, Horiuchi, M, Ebisui, E, Hasuda, T, Yuzawa, S, Nishida, M, Hatanaka, H, Inagaki, F.
登録日2001-09-26
公開日2001-10-10
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of N-terminal SH3 domain of Vav and the recognition site for Grb2 C-terminal SH3 domain
J.BIOMOL.NMR, 22, 2002
1QG1
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BU of 1qg1 by Molmil
GROWTH FACTOR RECEPTOR BINDING PROTEIN SH2 DOMAIN COMPLEXED WITH AN SHC-DERIVED PEPTIDE
分子名称: PROTEIN (GROWTH FACTOR RECEPTOR BINDING PROTEIN), PROTEIN (SHC-DERIVED PEPTIDE)
著者Ogura, K.
登録日1999-04-19
公開日1999-04-27
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the SH2 domain of Grb2 complexed with the Shc-derived phosphotyrosine-containing peptide.
J.Mol.Biol., 289, 1999
1WLP
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BU of 1wlp by Molmil
Solution Structure Of The P22Phox-P47Phox Complex
分子名称: Cytochrome b-245 light chain, Neutrophil cytosol factor 1
著者Ogura, K, Torikai, S, Saikawa, K, Yuzawa, S, Sumimoto, H, Inagaki, F.
登録日2004-06-29
公開日2005-10-04
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR solution structure of the tandem Src homology 3 domains of p47phox complexed with a p22phox-derived proline-rich peptide
J.Biol.Chem., 281, 2006
1X0N
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BU of 1x0n by Molmil
NMR structure of growth factor receptor binding protein SH2 domain complexed with the inhibitor
分子名称: 4-[(10S,14S,18S)-18-(2-AMINO-2-OXOETHYL)-14-(1-NAPHTHYLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL]BENZYLPHOSPHONIC ACID, Growth factor receptor-bound protein 2
著者Ogura, K, Shiga, T, Yuzawa, S, Yokochi, M, Burke, T.R, Inagaki, F.
登録日2005-03-24
公開日2005-04-19
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR structure of growth factor receptor binding protein SH2 domain complexed with the inhibitor
To be Published
2Z42
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BU of 2z42 by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1
分子名称: Alginate lyase, SULFATE ION
著者Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K.
登録日2007-06-12
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
2ZAB
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BU of 2zab by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG)
分子名称: Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAC
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BU of 2zac by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG)
分子名称: Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
3A0N
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BU of 3a0n by Molmil
Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus
分子名称: VAL-1, beta-D-glucopyranuronic acid
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-03-23
公開日2009-10-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
2ZAA
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BU of 2zaa by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG)
分子名称: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Alginate lyase, GLYCEROL
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZA9
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BU of 2za9 by Molmil
Crystal Structure of Alginate lyase A1-II' N141C/N199C
分子名称: Alginate lyase, SULFATE ION
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2LHI
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BU of 2lhi by Molmil
Solution structure of Ca2+/CNA1 peptide-bound yCaM
分子名称: CALCIUM ION, Calmodulin,Serine/threonine-protein phosphatase 2B catalytic subunit A1
著者Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F.
登録日2011-08-10
公開日2012-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
2LHH
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BU of 2lhh by Molmil
Solution structure of Ca2+-bound yCaM
分子名称: CALCIUM ION, Calmodulin
著者Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F.
登録日2011-08-10
公開日2012-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
2KFJ
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BU of 2kfj by Molmil
Solution structure of the loop deletion mutant of PB1 domain of Cdc24p
分子名称: Cell division control protein 24
著者Ogura, K, Tandai, T, Yoshinaga, S, Kobashigawa, Y, Kumeta, H, Inagaki, F.
登録日2009-02-22
公開日2009-10-06
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
1IPG
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BU of 1ipg by Molmil
SOLUTION STRUCTURE OF THE PB1 DOMAIN OF BEM1P
分子名称: BEM1 PROTEIN
著者Terasawa, H, Noda, Y, Ito, T, Hatanaka, H, Ichikawa, S, Ogura, K, Sumimoto, H, Inagaki, F.
登録日2001-05-14
公開日2001-08-15
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structure and ligand recognition of the PB1 domain: a novel protein module binding to the PC motif.
EMBO J., 20, 2001
1IP9
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BU of 1ip9 by Molmil
SOLUTION STRUCTURE OF THE PB1 DOMAIN OF BEM1P
分子名称: BEM1 PROTEIN
著者Terasawa, H, Noda, Y, Ito, T, Hatanaka, H, Ichikawa, S, Ogura, K, Sumimoto, H, Inagaki, F.
登録日2001-04-26
公開日2001-08-15
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structure and ligand recognition of the PB1 domain: a novel protein module binding to the PC motif.
EMBO J., 20, 2001
1Z9Q
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BU of 1z9q by Molmil
Solution structure of SH3 domain of p40phox
分子名称: Neutrophil cytosol factor 4
著者Adachi, S, Ogura, K, Fujioka, Y, Inagaki, F.
登録日2005-04-04
公開日2006-03-21
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of SH3 domain of p40phox
to be published
2RQE
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BU of 2rqe by Molmil
Solution structure of the silkworm bGRP/GNBP3 N-terminal domain reveals the mechanism for b-1,3-glucan specific recognition
分子名称: Beta-1,3-glucan-binding protein
著者Takahasi, K, Ochiai, M, Horiuchi, M, Kumeta, H, Ogura, K, Ashida, M, Inagaki, F.
登録日2009-04-22
公開日2009-06-23
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the silkworm betaGRP/GNBP3 N-terminal domain reveals the mechanism for beta-1,3-glucan-specific recognition.
Proc.Natl.Acad.Sci.USA, 106, 2009
2RQA
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BU of 2rqa by Molmil
Solution structure of LGP2 CTD
分子名称: ATP-dependent RNA helicase DHX58, ZINC ION
著者Takahasi, K, Kumeta, H, Tsuduki, N, Narita, R, Shigemoto, T, Hirai, R, Yoneyama, M, Horiuchi, M, Ogura, K, Fujita, T, Fuyuhiko, I.
登録日2009-03-17
公開日2009-05-05
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Solution Structures of Cytosolic RNA Sensor MDA5 and LGP2 C-terminal Domains: IDENTIFICATION OF THE RNA RECOGNITION LOOP IN RIG-I-LIKE RECEPTORS
J.Biol.Chem., 284, 2009
2RQB
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BU of 2rqb by Molmil
Solution structure of MDA5 CTD
分子名称: Interferon-induced helicase C domain-containing protein 1, ZINC ION
著者Takahasi, K, Kumeta, H, Tsuduki, N, Narita, R, Shigemoto, T, Hirai, R, Yoneyama, M, Horiuchi, M, Ogura, K, Fujita, T, Fuyuhiko, I.
登録日2009-03-17
公開日2009-05-05
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Solution Structures of Cytosolic RNA Sensor MDA5 and LGP2 C-terminal Domains: IDENTIFICATION OF THE RNA RECOGNITION LOOP IN RIG-I-LIKE RECEPTORS
J.Biol.Chem., 284, 2009
2RQW
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BU of 2rqw by Molmil
Solution structure of Bem1p SH3CI domain complexed with Ste20p-PRR peptide
分子名称: 24-meric peptide from Serine/threonine-protein kinase STE20, Bud emergence protein 1
著者Takaku, T, Ogura, K, Inagaki, F.
登録日2009-12-21
公開日2010-04-21
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of a novel Cdc42-binding module of Bem1 and its interaction with Ste20 and Cdc42
J.Biol.Chem., 285, 2010
2RQV
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Solution structure of SH3CI domain of Bem1p
分子名称: Bud emergence protein 1
著者Takaku, T, Ogura, K, Inagaki, F.
登録日2009-12-21
公開日2010-04-21
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of a novel Cdc42-binding module of Bem1 and its interaction with Ste20 and Cdc42
J.Biol.Chem., 285, 2010
2RPV
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BU of 2rpv by Molmil
Solution Structure of GB1 with LBT probe
分子名称: Immunoglobulin G-binding protein G, LANTHANUM (III) ION
著者Saio, T, Ogura, K, Yokochi, M, Kobashigawa, Y, Inagaki, F.
登録日2008-10-28
公開日2009-09-15
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect
J.Biomol.Nmr, 44, 2009

 

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