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PDB: 167 件
6K4D
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Ancestral luciferase AncLamp in complex with ATP and D-luciferin
分子名称: (4S)-2-(6-hydroxy-1,3-benzothiazol-2-yl)-4,5-dihydro-1,3-thiazole-4-carboxylic acid, Ancestral luciferase AncLamp, [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (4S)-2-(6-oxidanyl-1,3-benzothiazol-2-yl)-4,5-dihydro-1,3-thiazole-4-carboxylate
著者Oba, Y, Konishi, K, Yano, D, Kato, D, Shirai, T.
登録日2019-05-23
公開日2020-05-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Resurrecting the ancient glow of the fireflies.
Sci Adv, 6, 2020
6K4C
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BU of 6k4c by Molmil
Ancestral luciferase AncLamp in complex with DLSA
分子名称: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE, Ancestral luciferase AncLamp, MAGNESIUM ION
著者Oba, Y, Konishi, K, Yano, D, Kato, D, Shirai, T.
登録日2019-05-23
公開日2020-05-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Resurrecting the ancient glow of the fireflies.
Sci Adv, 6, 2020
2EYY
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BU of 2eyy by Molmil
CT10-Regulated Kinase isoform I
分子名称: v-crk sarcoma virus CT10 oncogene homolog isoform a
著者Kobashigawa, Y, Tanaka, S, Inagaki, F.
登録日2005-11-10
公開日2006-11-10
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007
5B1H
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BU of 5b1h by Molmil
Crystal structure of cystathionine beta-synthase from Lactobacillus plantarum
分子名称: Cystathionine beta-synthase, GLYCEROL, SULFATE ION
著者Matoba, Y, Sugiyama, M.
登録日2015-12-04
公開日2016-12-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystallographic and mutational analyses of cystathionine beta-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum
Protein Sci., 26, 2017
5B1I
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BU of 5b1i by Molmil
Crystal structure of K42A mutant of cystathionine beta-synthase from Lactobacillus plantarum in a complex with L-methionine
分子名称: Cystathionine beta-synthase, N-[(3-HYDROXY-2-METHYL-5-{[(TRIHYDROXYPHOSPHORANYL)OXY]METHYL}PYRIDIN-4-YL)METHYLENE]METHIONINE, SULFATE ION
著者Matoba, Y, Sugiyama, M.
登録日2015-12-04
公開日2016-12-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystallographic and mutational analyses of cystathionine beta-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum
Protein Sci., 26, 2017
6JIL
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BU of 6jil by Molmil
Crystal structure of D-cycloserine synthetase DcsG
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cycloserine biosynthesis protein DcsG, L(+)-TARTARIC ACID, ...
著者Matoba, Y, Sugiyama, M.
登録日2019-02-22
公開日2019-12-18
最終更新日2020-07-22
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Cyclization mechanism catalyzed by an ATP-grasp enzyme essential for d-cycloserine biosynthesis.
Febs J., 287, 2020
5Z0E
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BU of 5z0e by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the Y98F mutant of the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 298 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0F
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BU of 5z0f by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 10 min at 298 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0L
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BU of 5z0l by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 9 h at 277 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0M
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BU of 5z0m by Molmil
Crystal structure of copper-bound H63F-mutated tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 12 h at 298 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0K
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BU of 5z0k by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 4 h at 277 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0D
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BU of 5z0d by Molmil
1.16 A-resolution crystal structure of the deoxy-form tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0J
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BU of 5z0j by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 277 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0G
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BU of 5z0g by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 20 min at 298 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0I
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BU of 5z0i by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 1 h at 277 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
5Z0H
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BU of 5z0h by Molmil
Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 298 K
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2017-12-19
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein
To Be Published
2RSE
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BU of 2rse by Molmil
NMR structure of FKBP12-mTOR FRB domain-rapamycin complex structure determined based on PCS
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A, Serine/threonine-protein kinase mTOR, TERBIUM(III) ION
著者Kobashigawa, Y, Ushio, M, Saio, T, Inagaki, F.
登録日2012-01-25
公開日2012-05-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination.
J.Biomol.Nmr, 53, 2012
3WA6
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BU of 3wa6 by Molmil
Crystal structure of tannase from Lactobacillus plantarum in the orthorhombic crystal
分子名称: SULFATE ION, tannase
著者Matoba, Y, Tanaka, N, Sugiyama, M.
登録日2013-04-27
公開日2013-07-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic and mutational analyses of tannase from Lactobacillus plantarum
Proteins, 81, 2013
1KP4
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BU of 1kp4 by Molmil
CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2
分子名称: CALCIUM ION, phospholipase A2
著者Matoba, Y, Katsube, Y, Sugiyama, M.
登録日2001-12-28
公開日2002-09-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The crystal structure of prokaryotic phospholipase A2.
J.Biol.Chem., 277, 2002
3X44
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BU of 3x44 by Molmil
Crystal structure of O-ureido-L-serine-bound K43A mutant of O-ureido-L-serine synthase
分子名称: (E)-O-(carbamoylamino)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine, O-ureido-L-serine synthase
著者Matoba, Y, Uda, N, Oda, K, Sugiyama, M.
登録日2015-03-13
公開日2015-07-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The structural and mutational analyses of O-ureido-L-serine synthase necessary for D-cycloserine biosynthesis.
Febs J., 282, 2015
1LWB
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BU of 1lwb by Molmil
Crystal structure of prokaryotic phospholipase A2 at atomic resolution
分子名称: putative secreted protein
著者Matoba, Y, Sugiyama, M.
登録日2002-05-31
公開日2003-06-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Atomic resolution structure of prokaryotic phospholipase A2: Analysis of internal motion and implication for a catalytic mechanism.
PROTEINS: STRUCT.,FUNCT.,GENET., 51, 2003
3VGO
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BU of 3vgo by Molmil
Crystal structure of the N-terminal fragment of Cbl-b
分子名称: E3 ubiquitin-protein ligase CBL-B
著者Kobashigawa, Y, Noda, N.N, Inagaki, F.
登録日2011-08-18
公開日2011-12-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b
Proc.Natl.Acad.Sci.USA, 108, 2011
3WSW
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BU of 3wsw by Molmil
Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-bound form
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, L-lactate dehydrogenase, ...
著者Matoba, Y, Sugiyama, M.
登録日2014-03-27
公開日2014-09-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A.
Febs Open Bio, 4, 2014
3WSV
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BU of 3wsv by Molmil
Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-unbound form
分子名称: GLYCEROL, L-lactate dehydrogenase
著者Matoba, Y, Sugiyama, M.
登録日2014-03-27
公開日2014-09-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A.
Febs Open Bio, 4, 2014
3WA7
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Crystal structure of selenomethionine-labeled tannase from Lactobacillus plantarum in the orthorhombic crystal
分子名称: ACETATE ION, GLYCEROL, SULFATE ION, ...
著者Matoba, Y, Tanaka, N, Sugiyama, M.
登録日2013-04-27
公開日2013-07-24
最終更新日2013-11-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystallographic and mutational analyses of tannase from Lactobacillus plantarum.
Proteins, 81, 2013

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