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PDB: 62 results

5AZG
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BU of 5azg by Molmil
Crystal structure of LGG-1 complexed with a UNC-51 peptide
Descriptor: CADMIUM ION, Protein lgg-1, Serine/threonine-protein kinase unc-51
Authors:Watanabe, Y, Fujioka, Y, Noda, N.N.
Deposit date:2015-10-05
Release date:2015-12-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
5AZH
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BU of 5azh by Molmil
Crystal structure of LGG-2 fused with an EEEWEEL peptide
Descriptor: EEEWEEL peptide,Protein lgg-2, MAGNESIUM ION
Authors:Watanabe, Y, Fujioka, Y, Noda, N.N.
Deposit date:2015-10-05
Release date:2015-12-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
7BRN
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BU of 7brn by Molmil
Crystal structure of Atg40 AIM fused to Atg8
Descriptor: 1,2-ETHANEDIOL, Autophagy-related protein 40,Autophagy-related protein 8, L-EPINEPHRINE
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2020-03-29
Release date:2020-07-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.231 Å)
Cite:Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
7BRQ
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BU of 7brq by Molmil
Crystal structure of human FAM134B LIR fused to human GABARAP
Descriptor: GLYCEROL, Reticulophagy regulator 1,Gamma-aminobutyric acid receptor-associated protein
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2020-03-29
Release date:2020-07-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.404 Å)
Cite:Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
7BRT
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BU of 7brt by Molmil
Crystal structure of Sec62 LIR fused to GABARAP
Descriptor: Translocation protein SEC62,Gamma-aminobutyric acid receptor-associated protein
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2020-03-30
Release date:2020-07-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
7BRU
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BU of 7bru by Molmil
Crystal structure of human RTN3 LIR fused to human GABARAP
Descriptor: PHOSPHATE ION, Reticulon-3,Gamma-aminobutyric acid receptor-associated protein
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2020-03-30
Release date:2020-07-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.149 Å)
Cite:Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
5JGE
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BU of 5jge by Molmil
Crystal structure of Atg19 coiled-coil complexed with Ape1 propeptide
Descriptor: Ape1 propeptide, Autophagy-related protein 19
Authors:Watanabe, Y, Noda, N.N.
Deposit date:2016-04-20
Release date:2016-06-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
5JHC
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BU of 5jhc by Molmil
Crystal structure of the self-assembled propeptides from Ape1
Descriptor: Vacuolar aminopeptidase 1
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2016-04-20
Release date:2016-06-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
5JHF
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BU of 5jhf by Molmil
Crystal structure of Atg13(17BR)-Atg13(17LR)-Atg17-Atg29-Atg31 complex
Descriptor: Atg13 17BR, Atg13 17LR, KLTH0C07942p, ...
Authors:Fujioka, Y, Noda, N.N.
Deposit date:2016-04-21
Release date:2016-08-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:The Intrinsically Disordered Protein Atg13 Mediates Supramolecular Assembly of Autophagy Initiation Complexes.
Dev.Cell, 38, 2016
7D0I
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BU of 7d0i by Molmil
Cryo-EM structure of Schizosaccharomyces pombe Atg9
Descriptor: Autophagy-related protein 9, Lauryl Maltose Neopentyl Glycol
Authors:Matoba, K, Tsutsumi, A, Kikkawa, M, Noda, N.N.
Deposit date:2020-09-10
Release date:2020-10-28
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Atg9 is a lipid scramblase that mediates autophagosomal membrane expansion.
Nat.Struct.Mol.Biol., 27, 2020
7EU4
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BU of 7eu4 by Molmil
Crystal structure of plant ATG12 complexed with the AIM12 of ATG3
Descriptor: AIM12 from Autophagy-related protein 3, Ubiquitin-like protein ATG12B
Authors:Matoba, K, Noda, N.N.
Deposit date:2021-05-16
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Atg12-Interacting Motif Is Crucial for E2-E3 Interaction in Plant Atg8 System.
Biol.Pharm.Bull., 44, 2021
7F2X
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BU of 7f2x by Molmil
Crystal structure of MEK1 C121S mutant
Descriptor: MEK1 F11, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Fujioka, Y, Noda, N.N.
Deposit date:2021-06-15
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Qualitative differences in disease-associated MEK mutants reveal molecular signatures and aberrant signaling-crosstalk in cancer.
Nat Commun, 13, 2022
5YEC
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BU of 5yec by Molmil
Crystal structure of Atg7CTD-Atg8-MgATP complex in form II
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Autophagy-related protein 8, MAGNESIUM ION, ...
Authors:Yamaguchi, M, Satoo, K, Noda, N.N.
Deposit date:2017-09-16
Release date:2018-03-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.147 Å)
Cite:Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-Step Recognition.
J. Mol. Biol., 430, 2018
6AAG
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BU of 6aag by Molmil
Crystal structure of budding yeast Atg8 complexed with the helical AIM of Hfl1.
Descriptor: Transmembrane protein 184 homolog YKR051W,Autophagy-related protein 8
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2018-07-18
Release date:2018-12-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.445 Å)
Cite:Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
6AAF
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BU of 6aaf by Molmil
Crystal structure of fission yeast Atg8 complexed with the helical AIM of Hfl1.
Descriptor: Autophagy-related protein 8, Transmembrane protein 184 homolog C30D11.06c
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2018-07-18
Release date:2018-12-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
6A9E
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BU of 6a9e by Molmil
Crystal structure of the N-terminal domain of Atg2
Descriptor: Endolysin,Autophagy-related protein 2
Authors:Osawa, T, Noda, N.N.
Deposit date:2018-07-13
Release date:2019-03-20
Last modified:2019-04-17
Method:X-RAY DIFFRACTION (3.205 Å)
Cite:Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Nat. Struct. Mol. Biol., 26, 2019
6A9J
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BU of 6a9j by Molmil
Crystal structure of the PE-bound N-terminal domain of Atg2
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Endolysin,Autophagy-related protein 2
Authors:Osawa, T, Noda, N.N.
Deposit date:2018-07-13
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Nat. Struct. Mol. Biol., 26, 2019
7W36
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BU of 7w36 by Molmil
Crystal structure of human Atg5 complexed with a stapled peptide
Descriptor: Autophagy protein 5, Stapled ATG16L1-derived peptide
Authors:Kurata, I, Matoba, K, Noda, N.N.
Deposit date:2021-11-25
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Targeting the ATG5-ATG16L1 Protein-Protein Interaction with a Hydrocarbon-Stapled Peptide Derived from ATG16L1 for Autophagy Inhibition.
J.Am.Chem.Soc., 144, 2022
7YO9
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BU of 7yo9 by Molmil
Crystal structure of fusion protein of human TP53INP2 LIR and human GABARAP
Descriptor: ISOPROPYL ALCOHOL, PHOSPHATE ION, Tumor protein p53-inducible nuclear protein 2,Gamma-aminobutyric acid receptor-associated protein
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2022-08-01
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Development of new tools to study membrane-anchored mammalian Atg8 proteins.
Autophagy, 19, 2023
7YO8
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BU of 7yo8 by Molmil
Crystal structure of fission yeast Hfl1 LIR fused to human GABARAPL2
Descriptor: Transmembrane protein 184 homolog C30D11.06c,Gamma-aminobutyric acid receptor-associated protein-like 2
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2022-08-01
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.805 Å)
Cite:Development of new tools to study membrane-anchored mammalian Atg8 proteins.
Autophagy, 19, 2023
7YDO
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BU of 7ydo by Molmil
Crystal structure of Atg44
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Uncharacterized protein C26A3.14c
Authors:Maruyama, T, Noda, N.N.
Deposit date:2022-07-04
Release date:2023-05-17
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:The mitochondrial intermembrane space protein mitofissin drives mitochondrial fission required for mitophagy.
Mol.Cell, 83, 2023
7VED
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BU of 7ved by Molmil
Crystal structure of GABARAP fused to TEX264 LIR with S272D mutation
Descriptor: SULFATE ION, Testis-expressed protein 264,Gamma-aminobutyric acid receptor-associated protein
Authors:Yamasaki, A, Noda, N.N.
Deposit date:2021-09-08
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins.
Embo Rep., 23, 2022
3VX8
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BU of 3vx8 by Molmil
Crystal structure of Arabidopsis thaliana Atg7NTD-Atg3 complex
Descriptor: Autophagy-related protein 3, Ubiquitin-like modifier-activating enzyme atg7
Authors:Matoba, K, Fujioka, Y, Noda, N.N.
Deposit date:2012-09-11
Release date:2012-11-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7.
Nat.Struct.Mol.Biol., 19, 2012
2Z0D
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BU of 2z0d by Molmil
The crystal structure of human Atg4B- LC3(1-120) complex
Descriptor: Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K, Noda, N.N, Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
2Z0E
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BU of 2z0e by Molmil
The crystal structure of human Atg4B- LC3(1-124) complex
Descriptor: Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K, Noda, N.N, Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009

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數據於2024-05-29公開中

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