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PDB: 55 件
5I21
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BU of 5i21 by Molmil
Y55W Hfq from Pseudomonas aeruginosa
分子名称: CHLORIDE ION, RNA-binding protein Hfq
著者Nikulin, A.D, Lekontseva, N.V.
登録日2016-02-08
公開日2016-03-16
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Y55W Hfq from Pseudomonas aeruginosa
To Be Published
8P9M
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BU of 8p9m by Molmil
Hexameric Hfq from Chromobacterium haemolyticum
分子名称: GLYCEROL, RNA-binding protein Hfq
著者Nikulin, A.D, Lekontseva, N.V.
登録日2023-06-06
公開日2024-05-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Structure of the Hfq Protein from Chromobacterium haemolyticum Revealed a New Variant of Regulation of RNA Binding with the Protein
Crystallography Reports, 68, 2023
8P91
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Hfq from Chromobacterium haemolyticum; a P6 space group monomer
分子名称: RNA-binding protein Hfq
著者Nikulin, A.D, Lekontseva, N.V.
登録日2023-06-05
公開日2023-07-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Hfq from Chromobacterium haemolyticum
Crystallography Reports
1KUQ
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BU of 1kuq by Molmil
CRYSTAL STRUCTURE OF T3C MUTANT S15 RIBOSOMAL PROTEIN IN COMPLEX WITH 16S RRNA
分子名称: 16S RIBOSOMAL RNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, SULFATE ION
著者Nikulin, A.D, Tishchenko, S, Revtovich, S, Ehresmann, B, Ehresmann, C, Dumas, P, Garber, M, Nikonov, S, Nevskaya, N.
登録日2002-01-22
公開日2003-06-24
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Role of N-terminal helix in interaction of ribosomal protein S15 with 16S rRNA.
Biochemistry Mosc., 69, 2004
6TFL
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BU of 6tfl by Molmil
Lsm protein (SmAP) from Halobacterium salinarum
分子名称: CALCIUM ION, GLYCEROL, RNA-binding protein Lsm, ...
著者Nikulin, A.D, Fando, M.S, Lekontseva, N.V.
登録日2019-11-14
公開日2020-11-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.397 Å)
主引用文献Structure and RNA-Binding Properties of Lsm Protein from Halobacterium salinarum.
Biochemistry Mosc., 86, 2021
3QUI
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BU of 3qui by Molmil
Crystal structure of Pseudomonas aeruginosa Hfq in complex with ADPNP
分子名称: ADENINE, ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
著者Nikulin, A.D, Murina, V.N, Gabdulkhakov, A.G.
登録日2011-02-24
公開日2012-02-08
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.933 Å)
主引用文献Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
5MKN
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BU of 5mkn by Molmil
Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
分子名称: Like-Sm ribonucleoprotein core, TETRAETHYLENE GLYCOL, URIDINE-5'-MONOPHOSPHATE
著者Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V, Kravchenko, O.V.
登録日2016-12-05
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of SmAP (LSm) protein from Methanococcus vannielii in complex with URIDINE-5'-MONOPHOSPHATE
To Be Published
6XYJ
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BU of 6xyj by Molmil
Hfq from E.coli with inserted long loop L4 sequence
分子名称: RNA-binding protein Hfq
著者Nikulin, A.D, Alipov, A.A, Lekontseva, N.V.
登録日2020-01-30
公開日2021-02-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.772 Å)
主引用文献Structure of a Mutant Form of Translation Regulator Hfq with the Extended Loop L4
Crystallography Reports, 66, 2021
2RFV
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BU of 2rfv by Molmil
High resolution structure of L-methionine gamma-lyase from Citrobacter freundii
分子名称: CHLORIDE ION, Methionine gamma-lyase
著者Nikulin, A.D, Revtovich, S.V, Morozova, E.A, Nevskaya, N.A, Nikonov, S.V, Garber, M.B, Demidkina, T.V.
登録日2007-10-02
公開日2008-08-19
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.355 Å)
主引用文献High-resolution structure of methionine gamma-lyase from Citrobacter freundii.
Acta Crystallogr.,Sect.D, 64, 2008
4X9D
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BU of 4x9d by Molmil
High-resolution structure of Hfq from Methanococcus jannaschii in complex with UMP
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Nikulin, A.D, Tishchenko, S.V, Nikonova, E.Y, Murina, V.N, Mihailina, A.O, Lekontseva, N.V.
登録日2014-12-11
公開日2015-12-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Characterization of RNA-binding properties of the archaeal Hfq-like protein from Methanococcus jannaschii.
J. Biomol. Struct. Dyn., 35, 2017
4X9C
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BU of 4x9c by Molmil
1.4A crystal structure of Hfq from Methanococcus jannaschii
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Nikulin, A.D, Tishchenko, S.V, Nikonova, S.V, Murina, V.N, Mihailina, A.O, Lekontseva, N.V.
登録日2014-12-11
公開日2014-12-24
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Characterization of RNA-binding properties of the archaeal Hfq-like protein from Methanococcus jannaschii.
J. Biomol. Struct. Dyn., 35, 2017
1U1T
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BU of 1u1t by Molmil
Hfq protein from Pseudomonas aeruginosa. High-salt crystals
分子名称: Hfq protein
著者Nikulin, A.D, Stolboushkina, E.A, Perederina, A.A, Vassilieva, I.M, Blaesi, U, Moll, I, Kachalova, G, Yokoyama, S, Vassylyev, D, Garber, M, Nikonov, S.V, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-16
公開日2005-01-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of Pseudomonas aeruginosa Hfq protein.
Acta Crystallogr.,Sect.D, 61, 2005
1U1S
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BU of 1u1s by Molmil
Hfq protein from Pseudomonas aeruginosa. Low-salt crystals
分子名称: Hfq protein
著者Nikulin, A.D, Stolboushkina, E.A, Perederina, I, Vassilieva, I.M, Blaesi, U, Moll, I, Kachalova, G, Vassylyev, D, Yokoyama, S, Garber, M, Nikonov, S.V, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-16
公開日2005-01-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of Pseudomonas aeruginosa Hfq protein.
Acta Crystallogr.,Sect.D, 61, 2005
5MKI
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BU of 5mki by Molmil
Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Like-Sm ribonucleoprotein core
著者Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V.
登録日2016-12-05
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.048 Å)
主引用文献Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.
Biochimie, 175, 2020
5MKL
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BU of 5mkl by Molmil
Crystal structure of SmAP (LSm) protein from Sulfolobus acidocaldarius
分子名称: Sm ribonucleo
著者Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V.
登録日2016-12-05
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.086 Å)
主引用文献Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.
Biochimie, 175, 2020
4J6W
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BU of 4j6w by Molmil
Crystal structure of HFQ from Pseudomonas aeruginosa in complex with CTP
分子名称: CHLORIDE ION, CYTIDINE-5'-DIPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, ...
著者Nikulin, A.D, Murina, V, Lekontseva, N.
登録日2013-02-12
公開日2013-07-31
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
4J6X
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BU of 4j6x by Molmil
Crystal structure of Hfq from Pseudomonas aeruginosa in complex with UTP
分子名称: Protein hfq, URIDINE 5'-TRIPHOSPHATE
著者Nikulin, A.D, Murina, V, Lekontseva, N.
登録日2013-02-12
公開日2013-07-31
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.222 Å)
主引用文献Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
4J6Y
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BU of 4j6y by Molmil
Hfq from Pseudomonas aeruginosa crystallized in GTP presence
分子名称: CADMIUM ION, Protein hfq
著者Nikulin, A.D, Murina, V, Lekontseva, N.
登録日2013-02-12
公開日2013-07-31
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1405 Å)
主引用文献Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
5DY9
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BU of 5dy9 by Molmil
Y68T Hfq from Methanococcus jannaschii in complex with AMP
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
著者Nikulin, A.D, Mikhailina, A.O, Lekontseva, N.V, Balobanov, V.A, Nikonova, E.Y, Tishchenko, S.V.
登録日2015-09-24
公開日2016-09-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Characterization of RNA-binding properties of the archaeal Hfq-like protein from Methanococcus jannaschii.
J. Biomol. Struct. Dyn., 35, 2017
3MKJ
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BU of 3mkj by Molmil
Methionine gamma-lyase from Citrobacter freundii with pyridoximine-5'-phosphate
分子名称: Methionine gamma-lyase, [5-hydroxy-4-(iminomethyl)-6-methyl-pyridin-3-yl]methyl dihydrogen phosphate
著者Revtovich, S.V, Nikulin, A.D, Morozova, E.A, Demidkina, T.V.
登録日2010-04-15
公開日2010-08-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Exploring methionine gamma-lyase structure-function relationship via microspectrophotometry and X-ray crystallography
Biochim.Biophys.Acta, 1814, 2011
3CW2
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BU of 3cw2 by Molmil
Crystal structure of the intact archaeal translation initiation factor 2 from Sulfolobus solfataricus .
分子名称: Translation initiation factor 2 subunit alpha, Translation initiation factor 2 subunit beta, Translation initiation factor 2 subunit gamma
著者Stolboushkina, E.A, Nikonov, S.V, Nikulin, A.D, Blaesi, U, Manstein, D.J, Fedorov, R.V, Garber, M.B, Nikonov, O.S.
登録日2008-04-21
公開日2009-01-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the intact archaeal translation initiation factor 2 demonstrates very high conformational flexibility in the alpha- and beta-subunits.
J.Mol.Biol., 382, 2008
1Y4I
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BU of 1y4i by Molmil
Crystal structure of Citrobacter Freundii L-methionine-lyase
分子名称: SULFATE ION, methionine gamma-lyase
著者Revtovich, S.V, Mamaeva, D.V, Morozova, E.A, Nikulin, A.D, Nikonov, S.V, Garber, M.B, Demidkina, T.V.
登録日2004-12-01
公開日2005-06-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of Citrobacter freundii L-methionine gamma-lyase.
Acta Crystallogr.,Sect.F, 61, 2005
5K30
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BU of 5k30 by Molmil
Crystal structure of methionine gamma-lyase from Citrobacter freundii modified by S-Ethyl-L-cysteine sulfoxide
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, Methionine gamma-lyase, ...
著者Revtovich, S.V, Nikulin, A.D, Morozova, E.A, Demidkina, T.V.
登録日2016-05-19
公開日2017-07-12
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Sulfoxides of sulfur-containing amino acids are suicide substrates of Citrobacter freundii methionine gamma-lyase. Structural bases of the enzyme inactivation.
Biochimie, 168, 2020
6EGR
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BU of 6egr by Molmil
Crystal structure of Citrobacter freundii methionine gamma-lyase with V358Y replacement
分子名称: DI(HYDROXYETHYL)ETHER, Methionine gamma-lyase, PYRIDOXAL-5'-PHOSPHATE, ...
著者Revtovich, S.V, Demitri, N, Raboni, S, Nikulin, A.D, Morozova, E.A, Demidkina, T.V, Storici, P, Mozzarelli, A.
登録日2017-09-12
公開日2018-10-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Engineering methionine gamma-lyase from Citrobacter freundii for anticancer activity.
Biochim Biophys Acta Proteins Proteom, 1866, 2018
5M3Z
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BU of 5m3z by Molmil
Crystal structure of Citrobacter freundii methionine gamma-lyase with C115H replacement in the complex with L-norleucine
分子名称: 2-[O-PHOSPHONOPYRIDOXYL]-AMINO-HEXANOIC ACID, Methionine gamma-lyase, NORLEUCINE, ...
著者Revtovich, S.V, Nikulin, A.D, Anufrieva, N.V, Morozova, E.A, Demidkina, T.V.
登録日2016-10-17
公開日2017-06-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of mutant form Cys115His of Citrobacter freundii methionine gamma-lyase complexed with l-norleucine.
Biochim. Biophys. Acta, 1865, 2017

 

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