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PDB: 42 results
2GO2
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BU of 2go2 by Molmil
Crystal structure of BbKI, a Kunitz-type kallikrein inhibitor
Descriptor: 1,2-ETHANEDIOL, Kunitz-type serine protease inhibitor BbKI
Authors:Navarro, M.V.A.S, Garratt, R.C.
Deposit date:2006-04-12
Release date:2007-03-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:The Crystal Structure of BbKI, a kunitz-type kallikrein inhibitor devoid of disulfide bridges
To be Published, 2006
5EXT
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BU of 5ext by Molmil
AAA+ domain of FleQ from Pseudomonas aeruginosa bound to ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Transcriptional regulator FleQ
Authors:Navarro, M.V.A.S, Sondermann, H, Matsuyama, B.Y.
Deposit date:2015-11-24
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 113, 2016
5EXP
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BU of 5exp by Molmil
AAA+ domain of FleQ from Pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Transcriptional regulator FleQ
Authors:Navarro, M.V.A.S, Sondermann, H, Matsuyama, B.Y.
Deposit date:2015-11-24
Release date:2016-01-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 113, 2016
5EXS
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BU of 5exs by Molmil
AAA+ ATPase FleQ from Pseudomonas aeruginosa bound to ATP-gamma-S
Descriptor: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Transcriptional regulator FleQ
Authors:Navarro, M.V.A.S, Sondermann, H, Matsuyama, B.
Deposit date:2015-11-24
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 113, 2016
5EXX
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BU of 5exx by Molmil
AAA+ ATPase FleQ from Pseudomonas aeruginosa bound to c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), SULFATE ION, Transcriptional regulator FleQ
Authors:Navarro, M.V.A.S, Sondermann, H, Krasteva, P.V.
Deposit date:2015-11-24
Release date:2016-02-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.311 Å)
Cite:Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 113, 2016
2GOJ
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BU of 2goj by Molmil
The crystal structure of the enzyme Fe-superoxide dismutase from Plasmodium falciparum
Descriptor: FE (II) ION, Fe-superoxide dismutase
Authors:Navarro, M.V.A.S, Garratt, R.C.
Deposit date:2006-04-13
Release date:2007-08-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Systematic structural studies of iron superoxide dismutases from human parasites and a statistical coupling analysis of metal binding specificity
Proteins, 77, 2009
2GPC
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BU of 2gpc by Molmil
The crystal structure of the enzyme Fe-superoxide dismutase from Trypanosoma cruzi
Descriptor: FE (II) ION, MAGNESIUM ION, iron superoxide dismutase
Authors:Navarro, M.V.A.S, Garratt, R.C.
Deposit date:2006-04-17
Release date:2007-08-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Systematic structural studies of iron superoxide dismutases from human parasites and a statistical coupling analysis of metal binding specificity
Proteins, 77, 2009
3HV8
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BU of 3hv8 by Molmil
Crystal structure of FimX EAL domain from Pseudomonas aeruginosa bound to c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Protein FimX
Authors:Navarro, M.V.A.S, De, N, Bae, N, Sondermann, H.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.445 Å)
Cite:Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX.
Structure, 17, 2009
3I5C
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BU of 3i5c by Molmil
Crystal structure of a fusion protein containing the leucine zipper of GCN4 and the GGDEF domain of WspR from Pseudomonas aeruginosa
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Fusion of General control protein GCN4 and WSPR response regulator protein, MAGNESIUM ION
Authors:Navarro, M.V.A.S, De, N, Sondermann, H.
Deposit date:2009-07-03
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR.
J.Mol.Biol., 393, 2009
3I5B
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BU of 3i5b by Molmil
Crystal structure of the isolated GGDEF domain of WpsR from Pseudomonas aeruginosa
Descriptor: L(+)-TARTARIC ACID, WspR response regulator
Authors:Navarro, M.V.A.S, De, N, Sondermann, H.
Deposit date:2009-07-03
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.043 Å)
Cite:Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR.
J.Mol.Biol., 393, 2009
3HV9
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BU of 3hv9 by Molmil
Crystal structure of FimX EAL domain from Pseudomonas aeruginosa
Descriptor: GLYCEROL, Protein FimX
Authors:Navarro, M.V.A.S, De, N, Bae, N, Sondermann, H.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX.
Structure, 17, 2009
3I5A
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BU of 3i5a by Molmil
Crystal structure of full-length WpsR from Pseudomonas syringae
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Response regulator/GGDEF domain protein, STRONTIUM ION
Authors:Navarro, M.V.A.S, De, N, Sondermann, H.
Deposit date:2009-07-03
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.796 Å)
Cite:Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR.
J.Mol.Biol., 393, 2009
3HVA
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BU of 3hva by Molmil
Crystal structure of FimX GGDEF domain from Pseudomonas aeruginosa
Descriptor: Protein FimX
Authors:Navarro, M.V.A.S, De, N, Bae, N, Sondermann, H.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.042 Å)
Cite:Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX.
Structure, 17, 2009
2PTW
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BU of 2ptw by Molmil
Crystal Structure of the T. brucei enolase complexed with sulphate, identification of a metal binding site IV
Descriptor: 1,2-ETHANEDIOL, Enolase, SULFATE ION, ...
Authors:Navarro, M.V.A.S, Rigden, D.J, Garratt, R.C, Dias, S.M.G.
Deposit date:2007-05-08
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics.
Febs J., 274, 2007
2PTY
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BU of 2pty by Molmil
Crystal Structure of the T. brucei enolase complexed with PEP
Descriptor: 1,2-ETHANEDIOL, Enolase, PHOSPHOENOLPYRUVATE, ...
Authors:Navarro, M.V.A.S, Rigden, D.J, Garratt, R.C, Dias, S.M.G.
Deposit date:2007-05-08
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics.
Febs J., 274, 2007
2PTX
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BU of 2ptx by Molmil
Crystal Structure of the T. brucei enolase complexed with sulphate in closed conformation
Descriptor: 1,2-ETHANEDIOL, Enolase, SULFATE ION, ...
Authors:Navarro, M.V.A.S, Rigden, D.J, Garratt, R.C, Dias, S.M.G.
Deposit date:2007-05-08
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics.
Febs J., 274, 2007
2PU1
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BU of 2pu1 by Molmil
Crystal Structure of the T. brucei enolase complexed with Fluoro-phosphonoacetohydroxamate (FPAH)
Descriptor: 1,2-ETHANEDIOL, Enolase, ZINC ION, ...
Authors:Navarro, M.V.A.S, Rigden, D.J, Garratt, R.C, Dias, S.M.G.
Deposit date:2007-05-08
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics.
Febs J., 274, 2007
2PTZ
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BU of 2ptz by Molmil
Crystal Structure of the T. brucei enolase complexed with phosphonoacetohydroxamate (PAH), His156-out conformation
Descriptor: 1,2-ETHANEDIOL, Enolase, PHOSPHONOACETOHYDROXAMIC ACID, ...
Authors:Navarro, M.V.A.S, Rigden, D.J, Garratt, R.C, Dias, S.M.G.
Deposit date:2007-05-08
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics.
Febs J., 274, 2007
2PU0
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BU of 2pu0 by Molmil
Crystal Structure of the T. brucei enolase complexed with phosphonoacetohydroxamate (PAH), His156-in conformation
Descriptor: 1,2-ETHANEDIOL, Enolase, PHOSPHONOACETOHYDROXAMIC ACID, ...
Authors:Navarro, M.V.A.S, Rigden, D.J, Garratt, R.C, Dias, S.M.G.
Deposit date:2007-05-08
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics.
Febs J., 274, 2007
2PO2
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BU of 2po2 by Molmil
Crystal structure of the P. abyssi exosome RNase PH ring complexed with CDP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CYTIDINE-5'-DIPHOSPHATE, Probable exosome complex exonuclease 1, ...
Authors:Navarro, M.V.A.S, Guimaraes, B.G.
Deposit date:2007-04-25
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Insights into the mechanism of progressive RNA degradation by the archaeal exosome.
J.Biol.Chem., 283, 2008
2PNZ
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BU of 2pnz by Molmil
Crystal structure of the P. abyssi exosome RNase PH ring complexed with UDP and GMP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GUANOSINE-5'-MONOPHOSPHATE, Probable exosome complex exonuclease 1, ...
Authors:Navarro, M.V.A.S, Guimaraes, B.G.
Deposit date:2007-04-25
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Insights into the mechanism of progressive RNA degradation by the archaeal exosome.
J.Biol.Chem., 283, 2008
2PO1
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BU of 2po1 by Molmil
Crystal structure of the P. abyssi exosome RNase PH ring complexed with a single stranded 10-mer poly(A) RNA
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 10-mer poly(A), Probable exosome complex exonuclease 1, ...
Authors:Navarro, M.V.A.S, Guimaraes, B.G.
Deposit date:2007-04-25
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Insights into the mechanism of progressive RNA degradation by the archaeal exosome.
J.Biol.Chem., 283, 2008
2PO0
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BU of 2po0 by Molmil
Crystal structure of the P. abyssi exosome RNase PH ring complexed with ADP in double conformation
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Probable exosome complex exonuclease 1, ...
Authors:Navarro, M.V.A.S, Guimaraes, B.G.
Deposit date:2007-04-25
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Insights into the mechanism of progressive RNA degradation by the archaeal exosome.
J.Biol.Chem., 283, 2008
1OEP
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BU of 1oep by Molmil
Structure of Trypanosoma brucei enolase reveals the inhibitory divalent metal site
Descriptor: 1,2-ETHANEDIOL, ENOLASE, SULFATE ION, ...
Authors:Da Silva giotto, M.T, Navarro, M.V.A.S, Garratt, R.C, Rigden, D.J.
Deposit date:2003-03-28
Release date:2003-04-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Crystal Structure of Trypanosoma Brucei Enolase: Visualisation of the Inhibitory Metal Binding Site III and Potential as Target for Selective, Irreversible Inhibition
J.Mol.Biol., 331, 2003
3PJX
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BU of 3pjx by Molmil
Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32
Descriptor: 1,2-ETHANEDIOL, Cyclic dimeric GMP binding protein
Authors:Sondermann, H, Navarro, M.V.A.S.
Deposit date:2010-11-10
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.0002 Å)
Cite:Structural Basis for c-di-GMP-Mediated Inside-Out Signaling Controlling Periplasmic Proteolysis.
Plos Biol., 9, 2011

 

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