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PDB: 293 results

3G9T
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BU of 3g9t by Molmil
Crystal structure of EstE5, was soaked by p-nitrophenyl butyrate for 5sec
Descriptor: Esterase/lipase
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2009-02-14
Release date:2009-03-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural and biological characterization of EstE5
to be published
3H19
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BU of 3h19 by Molmil
Crystal structure of EstE5, was soaked by methyl alcohol
Descriptor: Esterase/lipase
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2009-04-11
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of EstE5, was soaked by organic solvent
To be Published
3GVY
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BU of 3gvy by Molmil
Crystal structure of bacterioferritin from R.sphaeroides
Descriptor: Bacterioferritin, FE (III) ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2009-03-31
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of bacterioferritin from Rhodobacter sphaeroides
Biochem.Biophys.Res.Commun., 391, 2010
3H1A
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BU of 3h1a by Molmil
Crystal structure of EstE5, was soaked by ethyl alcohol
Descriptor: Esterase/lipase
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2009-04-11
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of EstE5, was soaked by organic solvent
To be Published
3H1B
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BU of 3h1b by Molmil
Crystal structure of EstE5, was soaked by isopropyl alcohol
Descriptor: Esterase/lipase
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2009-04-11
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of EstE5, was soaked by organic solvent
To be Published
8H2A
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BU of 8h2a by Molmil
Crystal structure of alcohol dehydrogenase from Formosa agariphila
Descriptor: Alcohol dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ZINC ION
Authors:Brott, S, Bornscheuer, U.T, Nam, K.H.
Deposit date:2022-10-05
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of alcohol dehydrogenase from Formosa agariphila
To Be Published
8H2B
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BU of 8h2b by Molmil
Crystal structure of alcohol dehydrogenase from Zobellia galactanivorans
Descriptor: Alcohol dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, ...
Authors:Brott, S, Bornscheuer, U.T, Nam, K.H.
Deposit date:2022-10-05
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of alcohol dehydrogenase from Zobellia galactanivorans
To Be Published
5HZT
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BU of 5hzt by Molmil
Crystal structure of Dronpa-Cu2+
Descriptor: COPPER (II) ION, Fluorescent protein Dronpa
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2016-02-03
Release date:2017-03-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Crystal structures of Dronpa complexed with quenchable metal ions provide insight into metal biosensor development
FEBS Lett., 590, 2016
6AA7
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BU of 6aa7 by Molmil
Fluorescent protein from Acropora digitifera
Descriptor: Fluorescent protein
Authors:Kim, S.E, Hwang, K.Y, Nam, K.H.
Deposit date:2018-07-17
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Spectral and structural analysis of a red fluorescent protein from Acropora digitifera.
Protein Sci., 28, 2019
8G9S
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BU of 8g9s by Molmil
Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications
Descriptor: AcrIC8, Cas11, Cas5, ...
Authors:Hu, C, Nam, K.H, Ke, A.
Deposit date:2023-02-22
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Exploiting activation and inactivation mechanisms in type I-C CRISPR-Cas3 for genome-editing applications.
Mol.Cell, 84, 2024
5HXY
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BU of 5hxy by Molmil
Crystal structure of XerA recombinase
Descriptor: PHOSPHATE ION, Tyrosine recombinase XerA
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2016-01-31
Release date:2017-02-01
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Thermoplasma acidophilum XerA recombinase shows large C-shape clamp conformation and cis-cleavage mode for nucleophilic tyrosine
FEBS Lett., 590, 2016
8G9T
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BU of 8g9t by Molmil
Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications
Descriptor: AcrIC9, Cas11, Cas5, ...
Authors:Hu, C, Nam, K.H, Ke, A.
Deposit date:2023-02-22
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Exploiting activation and inactivation mechanisms in type I-C CRISPR-Cas3 for genome-editing applications.
Mol.Cell, 84, 2024
8GAF
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BU of 8gaf by Molmil
Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications
Descriptor: Cas11, Cas5, Cas7, ...
Authors:Hu, C, Nam, K.H, Ke, A.
Deposit date:2023-02-22
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Exploiting activation and inactivation mechanisms in type I-C CRISPR-Cas3 for genome-editing applications.
Mol.Cell, 84, 2024
5XVO
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BU of 5xvo by Molmil
E. fae Cas1-Cas2/prespacer/target ternary complex revealing DNA sampling and half-integration states
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ...
Authors:Xiao, Y, Ng, S, Nam, K.H, Ke, A.
Deposit date:2017-06-28
Release date:2017-10-04
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
5XVN
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BU of 5xvn by Molmil
E. far Cas1-Cas2/prespacer binary complex
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ...
Authors:Xiao, Y, Ng, S, Nam, K.H, Ke, A.
Deposit date:2017-06-28
Release date:2017-10-04
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
5XVP
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BU of 5xvp by Molmil
E. fae Cas1-Cas2/prespacer/target ternary complex revealing the fully integrated states
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (5'-D(P*TP*TP*CP*TP*CP*CP*GP*AP*G)-3'), ...
Authors:Xiao, Y, Ng, S, Nam, K.H, Ke, A.
Deposit date:2017-06-28
Release date:2017-10-04
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
7APU
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BU of 7apu by Molmil
Structure of Adenylate kinase from Escherichia coli in complex with two ADP molecules refined at 1.36 A resolution.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase, SODIUM ION
Authors:Grundstom, C, Wolf-Watz, M, Nam, K, Sauer, U.H.
Deposit date:2020-10-19
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Dynamic Connection between Enzymatic Catalysis and Collective Protein Motions.
Biochemistry, 60, 2021
3V9A
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BU of 3v9a by Molmil
Crystal structure of Esterase/Lipase from uncultured bacterium
Descriptor: Esterase/lipase, SULFATE ION
Authors:Kim, I.J, Nam, K.H.
Deposit date:2011-12-24
Release date:2012-02-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of Esterase/Lipase from uncultured bacterium
To be Published
3VJP
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BU of 3vjp by Molmil
Orthorhombic Crystal Structure of Salmonella FlgA in closed form
Descriptor: Flagella basal body P-ring formation protein flgA
Authors:Matsunami, H, Samatey, F.A, Namba, K.
Deposit date:2011-10-27
Release date:2012-10-31
Last modified:2016-07-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica
Sci Rep, 6, 2016
2GX2
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BU of 2gx2 by Molmil
Crystal structural and functional analysis of GFP-like fluorescent protein Dronpa
Descriptor: MAGNESIUM ION, fluorescent protein Dronpa
Authors:Hwang, K.Y, Nam, K.-H, Park, S.-Y, Sugiyama, K.
Deposit date:2006-05-08
Release date:2007-05-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S
Biochem.Biophys.Res.Commun., 354, 2007
6K1G
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BU of 6k1g by Molmil
Crystal structure of the L-fucose isomerase soaked with Mn2+ from Raoultella sp.
Descriptor: L-fucose isomerase, MANGANESE (II) ION
Authors:Kim, I.J, Kim, D.H, Nam, K.H, Kim, K.H.
Deposit date:2019-05-10
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Enzymatic synthesis of l-fucose from l-fuculose using a fucose isomerase fromRaoultellasp. and the biochemical and structural analyses of the enzyme.
Biotechnol Biofuels, 12, 2019
6K1F
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BU of 6k1f by Molmil
Crystal structure of the L-fucose isomerase from Raoultella sp.
Descriptor: L-fucose isomerase, MANGANESE (II) ION
Authors:Kim, I.J, Kim, D.H, Nam, K.H, Kim, K.H.
Deposit date:2019-05-10
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Enzymatic synthesis of l-fucose from l-fuculose using a fucose isomerase fromRaoultellasp. and the biochemical and structural analyses of the enzyme.
Biotechnol Biofuels, 12, 2019
5Z6V
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BU of 5z6v by Molmil
Crystal structure of a substrate-binding protein from Rhodothermus marinus
Descriptor: ABC-type uncharacterized transport system periplasmic component-like protein
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2018-01-25
Release date:2018-05-30
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of a substrate-binding protein from Rhodothermus marinus reveals a single alpha / beta-domain.
Biochem. Biophys. Res. Commun., 497, 2018
2GX0
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BU of 2gx0 by Molmil
Crystal structural and functional analysis of GFP-like fluorescent protein
Descriptor: fluorescent protein Dronpa
Authors:Hwang, K.Y, Nam, K.-H, Park, S.-Y, Sugiyama, K.
Deposit date:2006-05-08
Release date:2007-05-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S
Biochem.Biophys.Res.Commun., 354, 2007
5WRH
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BU of 5wrh by Molmil
FlgG structure based on the CryoEM map of the bacterial flagellar polyrod
Descriptor: Flagellar basal-body rod protein FlgG
Authors:Fujii, T, Namba, K.
Deposit date:2016-12-02
Release date:2017-02-08
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Identical folds used for distinct mechanical functions of the bacterial flagellar rod and hook.
Nat Commun, 8, 2017

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數據於2024-07-17公開中

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