7EII
| Ancestral L-Lys oxidase K387A variant (L-Lys binding form) | 分子名称: | FAD dependent L-Lys oxidase, FLAVIN-ADENINE DINUCLEOTIDE, LYSINE | 著者 | Sugiura, S, Nakano, S, Niwa, M, Hasebe, F, Ito, S. | 登録日 | 2021-03-31 | 公開日 | 2021-08-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining. J.Biol.Chem., 297, 2021
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7EIJ
| Ancestral L-Lys oxidase K387A variant (L-Arg binding form) | 分子名称: | ARGININE, FAD dependent L-Lys oxidase, FLAVIN-ADENINE DINUCLEOTIDE | 著者 | Sugiura, S, Nakano, S, Niwa, M, Hasebe, F, Ito, S. | 登録日 | 2021-03-31 | 公開日 | 2021-08-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining. J.Biol.Chem., 297, 2021
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7EPS
| Partial Consensus L-threonine 3-dehydrogenase (E-change) | 分子名称: | 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, L-threonine 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | 著者 | Kozuka, K, Nakano, S, Asano, Y, Ito, S. | 登録日 | 2021-04-27 | 公開日 | 2021-08-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.102 Å) | 主引用文献 | Partial Consensus Design and Enhancement of Protein Function by Secondary-Structure-Guided Consensus Mutations. Biochemistry, 60, 2021
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7EPR
| Partial Consensus L-threonine 3-dehydrogenase (C-Change) | 分子名称: | L-threonine 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Kozuka, K, Nakano, S, Asano, Y, Ito, S. | 登録日 | 2021-04-27 | 公開日 | 2021-08-11 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Partial Consensus Design and Enhancement of Protein Function by Secondary-Structure-Guided Consensus Mutations. Biochemistry, 60, 2021
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1Z3E
| Crystal Structure of Spx in Complex with the C-terminal Domain of the RNA Polymerase Alpha Subunit | 分子名称: | DNA-directed RNA polymerase alpha chain, Regulatory protein spx, SULFATE ION | 著者 | Newberry, K.J, Nakano, S, Zuber, P, Brennan, R.G. | 登録日 | 2005-03-11 | 公開日 | 2005-10-11 | 最終更新日 | 2017-10-11 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Crystal structure of the Bacillus subtilis anti-alpha, global transcriptional regulator, Spx, in complex with the {alpha} C-terminal domain of RNA polymerase Proc.Natl.Acad.Sci.Usa, 102, 2005
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5Y1F
| Monomeric L-threonine 3-dehydrogenase from metagenome database (NAD+ bound form) | 分子名称: | NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Y1G
| Monomeric L-threonine 3-dehydrogenase from metagenome database (AKB and NADH bound form) | 分子名称: | 2-AMINO-3-KETOBUTYRIC ACID, NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Y1E
| monomeric L-threonine 3-dehydrogenase from metagenome database (L-Ser and NAD+ bound form) | 分子名称: | NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SERINE | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Y1D
| Monomeric L-threonine 3-dehydrogenase from metagenome database (apo form) | 分子名称: | NAD dependent epimerase/dehydratase family | 著者 | Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S. | 登録日 | 2017-07-20 | 公開日 | 2017-11-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase. Biochemistry, 56, 2017
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5Z09
| ST0452(Y97N)-UTP binding form | 分子名称: | Dual sugar-1-phosphate nucleotidylyltransferase, URIDINE 5'-TRIPHOSPHATE | 著者 | Honda, Y, Nakano, S, Ito, S, Dadashipour, M, Zhang, Z, Kawarabayasi, Y. | 登録日 | 2017-12-19 | 公開日 | 2018-10-31 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.91 Å) | 主引用文献 | Improvement of ST0452N-Acetylglucosamine-1-Phosphate Uridyltransferase Activity by the Cooperative Effect of Two Single Mutations Identified through Structure-Based Protein Engineering Appl. Environ. Microbiol., 84, 2018
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5Z0A
| ST0452(Y97N)-GlcNAc binding form | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Dual sugar-1-phosphate nucleotidylyltransferase | 著者 | Honda, Y, Nakano, S, Ito, S, Dadashipour, M, Zhang, Z, Kawarabayasi, Y. | 登録日 | 2017-12-19 | 公開日 | 2018-10-31 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.09 Å) | 主引用文献 | Improvement of ST0452N-Acetylglucosamine-1-Phosphate Uridyltransferase Activity by the Cooperative Effect of Two Single Mutations Identified through Structure-Based Protein Engineering Appl. Environ. Microbiol., 84, 2018
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3WEU
| Crystal structure of the L-Lys epsilon-oxidase from Marinomonas mediterranea | 分子名称: | 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, L-lysine 6-oxidase, ... | 著者 | Okazaki, S, Nakano, S, Matsui, D, Akaji, S, Inagaki, K, Asano, Y. | 登録日 | 2013-07-12 | 公開日 | 2013-09-04 | 実験手法 | X-RAY DIFFRACTION (1.93 Å) | 主引用文献 | X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea J.Biochem., 154, 2013
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7X7K
| Ancestral L-Lys oxidase (AncLLysO-2) L-Arg binding form | 分子名称: | ARGININE, FAD dependent enzyme, FLAVIN-ADENINE DINUCLEOTIDE | 著者 | Motoyama, T, Ishida, C, Hasebe, F, Ito, S, Nakano, S. | 登録日 | 2022-03-09 | 公開日 | 2023-01-18 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Reaction Mechanism of Ancestral l-Lys alpha-Oxidase from Caulobacter Species Studied by Biochemical, Structural, and Computational Analysis Acs Omega, 7, 2022
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7X7I
| Ancestral L-Lys oxidase (AncLLysO-2) ligand free form | 分子名称: | FAD dependent enzyme, FLAVIN-ADENINE DINUCLEOTIDE | 著者 | Motoyama, T, Ishida, C, Hasebe, F, Ito, S, Nakano, S. | 登録日 | 2022-03-09 | 公開日 | 2023-01-18 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Reaction Mechanism of Ancestral l-Lys alpha-Oxidase from Caulobacter Species Studied by Biochemical, Structural, and Computational Analysis Acs Omega, 7, 2022
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7X7J
| Ancestral L-Lys oxidase (AncLLysO-2) L-Lys binding form | 分子名称: | FAD dependent enzyme, FLAVIN-ADENINE DINUCLEOTIDE, LYSINE | 著者 | Motoyama, T, Ishida, C, Hasebe, F, Ito, S, Nakano, S. | 登録日 | 2022-03-09 | 公開日 | 2023-01-18 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Reaction Mechanism of Ancestral l-Lys alpha-Oxidase from Caulobacter Species Studied by Biochemical, Structural, and Computational Analysis Acs Omega, 7, 2022
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3WEV
| Crystal structure of the Schiff base intermediate of L-Lys epsilon-oxidase from Marinomonas mediterranea with L-Lys | 分子名称: | 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, L-lysine 6-oxidase, ... | 著者 | Okazaki, S, Nakano, S, Matsui, D, Akaji, S, Inagaki, K, Asano, Y. | 登録日 | 2013-07-12 | 公開日 | 2013-09-04 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.98 Å) | 主引用文献 | X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea J.Biochem., 154, 2013
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3WGT
| Crystal structure of D-amino acid oxidase mutant | 分子名称: | (1R)-1-phenylethanamine, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ... | 著者 | Yasukawa, K, Nakano, S, Asano, Y. | 登録日 | 2013-08-09 | 公開日 | 2014-04-02 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | 主引用文献 | Tailoring D-amino acid oxidase from the pig kidney to R-stereoselective amine oxidase and its use in the deracemization of alpha-methylbenzylamine. Angew.Chem.Int.Ed.Engl., 53, 2014
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